Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0015360

Physical Location & Seq

Genomic Coordinates Forward (+)

17770091 .. 17770857

Gene Structure 767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1072300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTCGTCCACCCCCACCCCCACCTCCAACTCCAACCCCCACTCCCCCACTAATTATCTAACTACCCTCGGCCTCGGCTACGGCATCGCCATTTCTCTCGGCTTCCTCGTCCTCTTCTCCACCCTCCTCCTCGCCTCCTACATCTGCTGCCGCGTCTCCCGCCACCGCCACCACCACCACCACCCGCCTCAGCCCCAGAACCCGAATCCGAGCCCCGAAGGCGTCATCCTCCCCCGCATCATCTTCGTCGCCGAAGACGACAACGAGCAGCAGCAGCAGGATGATGATGGGAACGCCGTCGTCGGGCTCCACCCGAGCGTCATCAATTCCTACCCCAAGTTCCCGTTTTCCAAGGAGGCGTCGACCCCCGATTCGTCCACGTGCTCCATCTGCCTCTGCGACTACAAGGACGCCGAGATGCTCCGGATGATGCCCGAGTGCCGGCACTACTTCCACCTGTTGTGCCTCGACGCGTGGCTCCGGCTCAAAGGATCGTGCCCGGTTTGCCGTAACTCGCCGCTGCCGACGCCTCTGTCGACTCCGTTGCAGGAGGTTGTGCCTTTGTCTCAGTACCCGGCCGATCGGAGATGGAGGAGTTTTCAATGGGGTGTGTGGATTGAGTGGTTGCTTGGTTTCGGGAGATTAGGAAATGAAACTTTTTTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

223

Amino Acids

25.08

Weight (kDa)

6.34

Isoelectric Point (pI)

63.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	127 - 170	3.7e-12	Ring finger domain
zf-RING_11	PF17123	128 - 156	1.5e-07	RING-like zinc finger
zf-C3HC4_2	PF13923	128 - 169	4.7e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	133 - 170	2.1e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46160 AT2G46160
fragaria_vesca	FvH4_7g15500
malus_domestica	MD01G1072300.v1.1
prunus_persica	Prupe.2G178600_v2.0.a1
pyrus_communis	pycom01g10150 pycom07g12760
rosa_chinensis	RchiOBHm_Chr1g0357831
rosa_laevigata	RLG00000027993
rosa_multiflora	Rmu_sc0002071.1_g000001 Rmu_sc0011109.1_g000007
rosa_samantha	Rh1AG272800 Rh1BG240100 Rh1CG256700 Rh1DG268400
rosa_wichuraiana	Rw1G024350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	532
AccI	GTMKAC	2 cut(s)	362, 536
AccII	CGCG	2 cut(s)	153, 473
AccIII	TCCGGA	1 cut(s)	423
AciI	CCGC	6 cut(s)	151, 160, 166, 185, 235, 518
AclWI	GGATC	1 cut(s)	499
AcoI	YGGCCR	1 cut(s)	576
AcvI	CACGTG	1 cut(s)	381
AcyI	GRCGYC	4 cut(s)	222, 359, 411, 527
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	2 cut(s)	303, 441
AflIII	ACRYGT	1 cut(s)	471
AgsI	TTSAA	1 cut(s)	602
Alw21I	GWGCWC	1 cut(s)	386
Alw26I	GTCTC	2 cut(s)	160, 570
AlwI	GGATC	1 cut(s)	499
Ama87I	CYCGRG	2 cut(s)	313, 434
Aor13HI	TCCGGA	1 cut(s)	423
AoxI	GGCC	2 cut(s)	70, 576
ApeKI	GCWGC	5 cut(s)	147, 268, 271, 274, 520
ArsI	GACNNNNNNTTYG	2 cut(s)	355, 387
AsuC2I	CCSGG	2 cut(s)	500, 575
AvaI	CYCGRG	2 cut(s)	313, 434
BaeGI	GKGCMC	1 cut(s)	500
BanII	GRGCYC	2 cut(s)	215, 309
BbrPI	CACGTG	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	386
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	5 cut(s)	134, 280, 283, 286, 507
BccI	CCATC	3 cut(s)	281, 395, 582
BceAI	ACGGC	3 cut(s)	97, 281, 492
BcgI	CGANNNNNNTGC	4 cut(s)	226, 260, 526, 560
BcnI	CCSGG	2 cut(s)	500, 575
BcoDI	GTCTC	2 cut(s)	160, 570
BglI	GCCNNNNNGGC	1 cut(s)	219
BisI	GCNGC	7 cut(s)	148, 151, 269, 272, 275, 518, 521
BlsI	GCNGC	7 cut(s)	149, 152, 270, 273, 276, 519, 522
Bme1390I	CCNGG	2 cut(s)	500, 575
BmeT110I	CYCGRG	2 cut(s)	313, 434
BmiI	GGNNCC	2 cut(s)	308, 479
BmrFI	CCNGG	2 cut(s)	500, 575
BmsI	GCATC	4 cut(s)	93, 246, 408, 420
BpiI	GAAGAC	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	189
BpuMI	CCSGG	2 cut(s)	500, 575
BsaAI	YACGTR	1 cut(s)	381
BsaHI	GRCGYC	4 cut(s)	222, 359, 411, 527
BsaJI	CCNNGG	3 cut(s)	67, 73, 351
BsaWI	WCCGGW	1 cut(s)	423
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	2 cut(s)	303, 441
Bse118I	RCCGGY	1 cut(s)	441
BseAI	TCCGGA	1 cut(s)	423
BseDI	CCNNGG	3 cut(s)	67, 73, 351
BseGI	GGATG	3 cut(s)	225, 286, 432
BseLI	CCNNNNNNNGG	2 cut(s)	303, 441
BseMII	CTCAG	2 cut(s)	203, 581
BseRI	GAGGAG	3 cut(s)	116, 119, 607
BseSI	GKGCMC	1 cut(s)	500
BseX3I	CGGCCG	1 cut(s)	576
BseXI	GCAGC	5 cut(s)	134, 280, 283, 286, 507
Bsh1236I	CGCG	2 cut(s)	153, 473
Bsh1285I	CGRYCG	2 cut(s)	579, 583
BshFI	GGCC	2 cut(s)	72, 578
BsiEI	CGRYCG	2 cut(s)	579, 583
BsiHKAI	GWGCWC	1 cut(s)	386
BsiHKCI	CYCGRG	2 cut(s)	313, 434
BsiSI	CCGG	5 cut(s)	424, 442, 481, 500, 575
BslI	CCNNNNNNNGG	2 cut(s)	303, 441
BsmAI	GTCTC	2 cut(s)	160, 570
BsmBI	CGTCTC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	72, 578
BsoBI	CYCGRG	2 cut(s)	313, 434
Bsp1286I	GDGCHC	4 cut(s)	215, 309, 386, 500
Bsp13I	TCCGGA	1 cut(s)	423
Bsp143I	GATC	2 cut(s)	491, 580
BspACI	CCGC	6 cut(s)	151, 160, 166, 185, 235, 518
BspANI	GGCC	2 cut(s)	72, 578
BspCNI	CTCAG	2 cut(s)	202, 580
BspEI	TCCGGA	1 cut(s)	423
BspFNI	CGCG	2 cut(s)	153, 473
BspLI	GGNNCC	2 cut(s)	308, 479
BspPI	GGATC	1 cut(s)	499
BsrFI	RCCGGY	1 cut(s)	441
BssAI	RCCGGY	1 cut(s)	441
BssECI	CCNNGG	3 cut(s)	67, 73, 351
BssMI	GATC	2 cut(s)	491, 580
BssNI	GRCGYC	4 cut(s)	222, 359, 411, 527
BssT1I	CCWWGG	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	119
BstACI	GRCGYC	4 cut(s)	222, 359, 411, 527
BstBAI	YACGTR	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	443
BstDEI	CTNAG	2 cut(s)	189, 567
BstF5I	GGATG	3 cut(s)	225, 286, 432
BstFNI	CGCG	2 cut(s)	153, 473
BstKTI	GATC	2 cut(s)	494, 583
BstMAI	GTCTC	2 cut(s)	160, 570
BstMBI	GATC	2 cut(s)	491, 580
BstMCI	CGRYCG	2 cut(s)	579, 583
BstMWI	GCNNNNNNNGC	6 cut(s)	159, 219, 274, 390, 504, 526
BstSCI	CCNGG	2 cut(s)	498, 573
BstSLI	GKGCMC	1 cut(s)	500
BstUI	CGCG	2 cut(s)	153, 473
BstV1I	GCAGC	5 cut(s)	134, 280, 283, 286, 507
BstV2I	GAAGAC	1 cut(s)	261
BstZI	CGGCCG	1 cut(s)	576
BsuRI	GGCC	2 cut(s)	72, 578
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	225, 286, 432
Cac8I	GCNNGC	1 cut(s)	443
Cfr10I	RCCGGY	1 cut(s)	441
CseI	GACGC	7 cut(s)	142, 211, 307, 348, 419, 479, 535
Csp6I	GTAC	1 cut(s)	571
CviJI	RGCY	9 cut(s)	72, 78, 102, 193, 213, 307, 478, 484, 578
CviKI_1	RGCY	9 cut(s)	72, 78, 102, 193, 213, 307, 478, 484, 578
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	2 cut(s)	189, 567
DpnI	GATC	2 cut(s)	493, 582
DpnII	GATC	2 cut(s)	491, 580
DrdI	GACNNNNNNGTC	1 cut(s)	532
DseDI	GACNNNNNNGTC	1 cut(s)	532
EaeI	YGGCCR	1 cut(s)	576
EagI	CGGCCG	1 cut(s)	576
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EclXI	CGGCCG	1 cut(s)	576
Eco130I	CCWWGG	1 cut(s)	351
Eco24I	GRGCYC	2 cut(s)	215, 309
Eco52I	CGGCCG	1 cut(s)	576
Eco72I	CACGTG	1 cut(s)	381
Eco88I	CYCGRG	2 cut(s)	313, 434
EcoT14I	CCWWGG	1 cut(s)	351
EcoT38I	GRGCYC	2 cut(s)	215, 309
ErhI	CCWWGG	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	160
FauI	CCCGC	3 cut(s)	167, 192, 242
FblI	GTMKAC	2 cut(s)	362, 536
Fnu4HI	GCNGC	7 cut(s)	148, 151, 269, 272, 275, 518, 521
FokI	GGATG	3 cut(s)	212, 293, 439
FriOI	GRGCYC	2 cut(s)	215, 309
Fsp4HI	GCNGC	7 cut(s)	148, 151, 269, 272, 275, 518, 521
GluI	GCNGC	7 cut(s)	148, 151, 269, 272, 275, 518, 521
HaeIII	GGCC	2 cut(s)	72, 578
HapII	CCGG	5 cut(s)	424, 442, 481, 500, 575
HgaI	GACGC	7 cut(s)	142, 211, 307, 348, 419, 479, 535
Hin1I	GRCGYC	4 cut(s)	222, 359, 411, 527
HincII	GTYRAC	2 cut(s)	363, 537
HindII	GTYRAC	2 cut(s)	363, 537
HinfI	GANTC	3 cut(s)	205, 371, 538
HpaII	CCGG	5 cut(s)	424, 442, 481, 500, 575
Hpy166II	GTNNAC	4 cut(s)	9, 363, 378, 537
Hpy188I	TCNGA	2 cut(s)	210, 585
Hpy188III	TCNNGA	2 cut(s)	424, 637
Hpy8I	GTNNAC	4 cut(s)	9, 363, 378, 537
Hpy99I	CGWCG	6 cut(s)	251, 302, 305, 364, 473, 529
HpyAV	CCTTC	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	1 cut(s)	547
HpyF10VI	GCNNNNNNNGC	6 cut(s)	159, 219, 274, 390, 504, 526
HpyF3I	CTNAG	2 cut(s)	189, 567
HpySE526I	ACGT	1 cut(s)	380
Hsp92I	GRCGYC	4 cut(s)	222, 359, 411, 527
Kpn2I	TCCGGA	1 cut(s)	423
KroI	GCCGGC	1 cut(s)	441
KroNI	GCCGGC	1 cut(s)	443
Kzo9I	GATC	2 cut(s)	491, 580
LmnI	GCTCC	4 cut(s)	312, 389, 426, 483
LpnPI	CCDG	9 cut(s)	209, 263, 437, 455, 470, 494, 513, 533, 588
Lsp1109I	GCAGC	5 cut(s)	134, 280, 283, 286, 507
LweI	GCATC	4 cut(s)	93, 246, 408, 420
MaeII	ACGT	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	2 cut(s)	493, 582
MboI	GATC	2 cut(s)	491, 580
MboII	GAAGA	3 cut(s)	106, 235, 266
MhlI	GDGCHC	4 cut(s)	215, 309, 386, 500
MluCI	AATT	2 cut(s)	52, 325
MluI	ACGCGT	1 cut(s)	471
MlyI	GAGTC	1 cut(s)	532
MmeI	TCCRAC	2 cut(s)	51, 57
MroI	TCCGGA	1 cut(s)	423
MroNI	GCCGGC	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	520
MspI	CCGG	5 cut(s)	424, 442, 481, 500, 575
MspR9I	CCNGG	2 cut(s)	500, 575
MvnI	CGCG	2 cut(s)	153, 473
MwoI	GCNNNNNNNGC	6 cut(s)	159, 219, 274, 390, 504, 526
NaeI	GCCGGC	1 cut(s)	443
NciI	CCSGG	2 cut(s)	500, 575
NdeII	GATC	2 cut(s)	491, 580
NgoMIV	GCCGGC	1 cut(s)	441
NlaIV	GGNNCC	2 cut(s)	308, 479
NmeAIII	GCCGAG	4 cut(s)	48, 54, 78, 439
PcsI	WCGNNNNNNNCGW	4 cut(s)	105, 255, 521, 533
PdiI	GCCGGC	1 cut(s)	443
PfeI	GAWTC	2 cut(s)	205, 371
PkrI	GCNGC	7 cut(s)	149, 152, 270, 273, 276, 519, 522
Ple19I	CGATCG	1 cut(s)	583
PleI	GAGTC	1 cut(s)	532
PmaCI	CACGTG	1 cut(s)	381
PmlI	CACGTG	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	532
Ppu21I	YACGTR	1 cut(s)	381
PspCI	CACGTG	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	308, 479
PvuI	CGATCG	1 cut(s)	583
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
SalI	GTCGAC	2 cut(s)	361, 535
SatI	GCNGC	7 cut(s)	148, 151, 269, 272, 275, 518, 521
Sau3AI	GATC	2 cut(s)	491, 580
SchI	GAGTC	1 cut(s)	532
ScrFI	CCNGG	2 cut(s)	500, 575
SduI	GDGCHC	4 cut(s)	215, 309, 386, 500
SetI	ASST	4 cut(s)	26, 383, 459, 555
SfaNI	GCATC	4 cut(s)	93, 246, 408, 420
Sse9I	AATT	2 cut(s)	52, 325
SsiI	CCGC	6 cut(s)	151, 160, 166, 185, 235, 518
StyD4I	CCNGG	2 cut(s)	498, 573
StyI	CCWWGG	1 cut(s)	351
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	3 cut(s)	362, 468, 536
TasI	AATT	2 cut(s)	52, 325
TauI	GCSGC	2 cut(s)	153, 520
TfiI	GAWTC	2 cut(s)	205, 371
TseI	GCWGC	5 cut(s)	147, 268, 271, 274, 520
TspDTI	ATGAA	1 cut(s)	666
TspGWI	ACGGA	1 cut(s)	531
XmiI	GTMKAC	2 cut(s)	362, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.