RLG00000027993

Putative S-adenosyl-L-methionine-dependent methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
17568560 .. 17569144
585 bp
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UTR
Exon/CDS
Intron
RLM00000027993

Sequence Viewer

Length: 585 bp
ATGTCCCCCCCTCCCTCCTCCCCCTCCTCAAATTACCTCACTACCCTCGGCCTCGGCTACGCCATAGCCATCGCCCTTGGCTTTCTCGTCCTTCTCTCCACCCTCCTCCTCGCCTCCTACATCTGCTGCCGCGTCTCCCGCCACCACCGCTCCCAGCCCCAAACCCAAACCCAAACCCAAACCCAAAACCCCAACTCCTCCTCCGAGGGCGTCATCCTCCCTCGCATCATCTTCGTCGCCGAGGACGACGTTGAGAACCAAGAAAACGACGATGAGAACTCCGTCGTCGGCCTCCACCAGAACGTCATCAACTCCTACCCCAAGTTCCCTTTCTCCAAGGAAATCGGCGGCGGCGATGCCTCCACGTGCTCCATCTGCCTCTGCGACTACCGCGAATACGAGATGCTGAGGATGATGCCCGAGTGCCGCCACCACTTCCACCTATTGTGTCTCGACGCGTGGCTCAAGCTCAACGGCTCCTGCCCCGTCTGCCGGAACTCGCCGCTGCCGACTCCACTGTCAACGCCGCTACAGGAGGTGGTGCCGCTTAGCCAGCACGCCGCCGATCGGAGATGGAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

195

Amino Acids

21.67

Weight (kDa)

6.14

Isoelectric Point (pI)

67.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 122 - 165 2.5e-12 Ring finger domain
zf-RING_11 PF17123 123 - 151 9e-07 RING-like zinc finger
zf-rbx1 PF12678 128 - 165 1.8e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015360)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 517
AccB1I GGYRCC 1 cut(s) 541
AccBSI CCGCTC 1 cut(s) 150
AccII CGCG 3 cut(s) 132, 393, 458
AcvI CACGTG 1 cut(s) 366
AcyI GRCGYC 1 cut(s) 210
AfiI CCNNNNNNNGG 2 cut(s) 492, 567
AflIII ACRYGT 1 cut(s) 456
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 1 cut(s) 469
AluI AGCT 1 cut(s) 469
Alw21I GWGCWC 1 cut(s) 371
Alw26I GTCTC 2 cut(s) 139, 455
Ama87I CYCGRG 1 cut(s) 419
AoxI GGCC 2 cut(s) 49, 289
ApeKI GCWGC 2 cut(s) 126, 505
AvaI CYCGRG 1 cut(s) 419
BanI GGYRCC 1 cut(s) 541
BbrPI CACGTG 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 371
BbvCI CCTCAGC 1 cut(s) 407
BbvI GCAGC 2 cut(s) 113, 492
BccI CCATC 3 cut(s) 77, 380, 567
BceAI ACGGC 1 cut(s) 490
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BcoDI GTCTC 2 cut(s) 139, 455
BfmI CTRYAG 1 cut(s) 530
BlpI GCTNAGC 1 cut(s) 548
BmeT110I CYCGRG 1 cut(s) 419
BmiI GGNNCC 2 cut(s) 478, 543
BmsI GCATC 4 cut(s) 234, 346, 393, 405
Bpu10I CCTNAGC 1 cut(s) 407
Bpu1102I GCTNAGC 1 cut(s) 548
BpuEI CTTGAG 1 cut(s) 449
BsaAI YACGTR 1 cut(s) 366
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 6 cut(s) 46, 52, 76, 204, 240, 336
BsaXI ACNNNNNCTCC 6 cut(s) 134, 164, 179, 185, 209, 215
Bsc4I CCNNNNNNNGG 2 cut(s) 492, 567
BseDI CCNNGG 6 cut(s) 46, 52, 76, 204, 240, 336
BseGI GGATG 2 cut(s) 213, 417
BseLI CCNNNNNNNGG 2 cut(s) 492, 567
BseMII CTCAG 1 cut(s) 398
BseRI GAGGAG 6 cut(s) 7, 16, 95, 98, 187, 190
BseXI GCAGC 2 cut(s) 113, 492
BseYI CCCAGC 1 cut(s) 153
Bsh1236I CGCG 3 cut(s) 132, 393, 458
Bsh1285I CGRYCG 1 cut(s) 568
BshFI GGCC 2 cut(s) 51, 291
BshNI GGYRCC 1 cut(s) 541
BsiEI CGRYCG 1 cut(s) 568
BsiHKAI GWGCWC 1 cut(s) 371
BsiHKCI CYCGRG 1 cut(s) 419
BsiSI CCGG 1 cut(s) 493
BslI CCNNNNNNNGG 2 cut(s) 492, 567
BsmAI GTCTC 2 cut(s) 139, 455
BsmBI CGTCTC 1 cut(s) 139
BsnI GGCC 2 cut(s) 51, 291
BsoBI CYCGRG 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 371
Bsp143I GATC 1 cut(s) 565
Bsp1720I GCTNAGC 1 cut(s) 548
BspANI GGCC 2 cut(s) 51, 291
BspCNI CTCAG 1 cut(s) 399
BspFNI CGCG 3 cut(s) 132, 393, 458
BspLI GGNNCC 2 cut(s) 478, 543
BspT107I GGYRCC 1 cut(s) 541
BsrBI CCGCTC 1 cut(s) 150
BssECI CCNNGG 6 cut(s) 46, 52, 76, 204, 240, 336
BssMI GATC 1 cut(s) 565
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 2 cut(s) 76, 336
Bst4CI ACNGT 1 cut(s) 519
BstACI GRCGYC 1 cut(s) 210
BstBAI YACGTR 1 cut(s) 366
BstC8I GCNNGC 2 cut(s) 554, 558
BstDEI CTNAG 2 cut(s) 407, 548
BstF5I GGATG 2 cut(s) 213, 417
BstFNI CGCG 3 cut(s) 132, 393, 458
BstKTI GATC 1 cut(s) 568
BstMAI GTCTC 2 cut(s) 139, 455
BstMBI GATC 1 cut(s) 565
BstMCI CGRYCG 1 cut(s) 568
BstMWI GCNNNNNNNGC 6 cut(s) 138, 147, 375, 390, 489, 553
BstSFI CTRYAG 1 cut(s) 530
BstUI CGCG 3 cut(s) 132, 393, 458
BstV1I GCAGC 2 cut(s) 113, 492
BsuRI GGCC 2 cut(s) 51, 291
BtgZI GCGATG 2 cut(s) 55, 369
BtsCI GGATG 2 cut(s) 213, 417
BtsIMutI CAGTG 1 cut(s) 515
Cac8I GCNNGC 2 cut(s) 554, 558
CseI GACGC 3 cut(s) 121, 199, 464
DdeI CTNAG 2 cut(s) 407, 548
DpnI GATC 1 cut(s) 567
DpnII GATC 1 cut(s) 565
DrdI GACNNNNNNGTC 1 cut(s) 517
DseDI GACNNNNNNGTC 1 cut(s) 517
Eco130I CCWWGG 2 cut(s) 76, 336
Eco72I CACGTG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 419
EcoT14I CCWWGG 2 cut(s) 76, 336
ErhI CCWWGG 2 cut(s) 76, 336
Esp3I CGTCTC 1 cut(s) 139
FaiI YATR 1 cut(s) 65
FauI CCCGC 1 cut(s) 146
FokI GGATG 2 cut(s) 200, 424
GsaI CCCAGC 1 cut(s) 157
HaeIII GGCC 2 cut(s) 51, 291
HapII CCGG 1 cut(s) 493
HgaI GACGC 3 cut(s) 121, 199, 464
Hin1I GRCGYC 1 cut(s) 210
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HinfI GANTC 1 cut(s) 511
HpaII CCGG 1 cut(s) 493
Hpy166II GTNNAC 1 cut(s) 522
Hpy188I TCNGA 2 cut(s) 205, 570
Hpy188III TCNNGA 1 cut(s) 452
Hpy8I GTNNAC 1 cut(s) 522
Hpy99I CGWCG 6 cut(s) 239, 251, 272, 287, 290, 458
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 519
HpyCH4IV ACGT 3 cut(s) 249, 303, 365
HpyF10VI GCNNNNNNNGC 6 cut(s) 138, 147, 375, 390, 489, 553
HpyF3I CTNAG 2 cut(s) 407, 548
HpySE526I ACGT 3 cut(s) 249, 303, 365
Hsp92I GRCGYC 1 cut(s) 210
Kzo9I GATC 1 cut(s) 565
LmnI GCTCC 3 cut(s) 155, 374, 482
LpnPI CCDG 6 cut(s) 167, 311, 493, 506, 518, 566
Lsp1109I GCAGC 2 cut(s) 113, 492
LweI GCATC 4 cut(s) 234, 346, 393, 405
MaeII ACGT 3 cut(s) 249, 303, 365
MalI GATC 1 cut(s) 567
MbiI CCGCTC 1 cut(s) 150
MboI GATC 1 cut(s) 565
MboII GAAGA 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 371
MluCI AATT 1 cut(s) 31
MluI ACGCGT 1 cut(s) 456
MlyI GAGTC 1 cut(s) 505
MspA1I CMGCKG 1 cut(s) 505
MspI CCGG 1 cut(s) 493
MvnI CGCG 3 cut(s) 132, 393, 458
MwoI GCNNNNNNNGC 6 cut(s) 138, 147, 375, 390, 489, 553
NdeII GATC 1 cut(s) 565
NlaIV GGNNCC 2 cut(s) 478, 543
NmeAIII GCCGAG 3 cut(s) 27, 33, 265
PcsI WCGNNNNNNNCGW 3 cut(s) 243, 351, 506
Ple19I CGATCG 1 cut(s) 568
PleI GAGTC 1 cut(s) 505
PmaCI CACGTG 1 cut(s) 366
PmlI CACGTG 1 cut(s) 366
PpsI GAGTC 1 cut(s) 505
Ppu21I YACGTR 1 cut(s) 366
PspCI CACGTG 1 cut(s) 366
PspFI CCCAGC 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 478, 543
PvuI CGATCG 1 cut(s) 568
Sau3AI GATC 1 cut(s) 565
SchI GAGTC 1 cut(s) 505
SduI GDGCHC 1 cut(s) 371
SetI ASST 7 cut(s) 39, 252, 306, 368, 444, 471, 540
SfaNI GCATC 4 cut(s) 234, 346, 393, 405
SfcI CTRYAG 1 cut(s) 530
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 1 cut(s) 31
StyI CCWWGG 2 cut(s) 76, 336
TaaI ACNGT 1 cut(s) 519
TaiI ACGT 3 cut(s) 252, 306, 368
TaqI TCGA 1 cut(s) 453
TasI AATT 1 cut(s) 31
TauI GCSGC 8 cut(s) 132, 351, 354, 429, 505, 529, 547, 563
TscAI CASTG 1 cut(s) 522
TseI GCWGC 2 cut(s) 126, 505
TspGWI ACGGA 1 cut(s) 271
TspRI CASTG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.