FvH4_7g16650

UV-stimulated scaffold protein A homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014390
Physical Location & Seq
Reverse (-)
14230331 .. 14232927
2597 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g16650.t1

Sequence Viewer

Length: 1950 bp
ATGGAGGAAGAAGACGGAGGGAAGGTTAGGGTTTTGATCGAGAAGGCGACGGAATCGATCGAGCCAGAGGTCAACCCGCGCCTCCTCAAGGCCATCAAGGCCGTCGTCCGCCGCTCCGATTCCGAGCTCCGACTCGCCGCTCATCTTCTCATGGATCTCATGAAGCGCGACCACTCTCAGGTGAGGTATTTGACATTGTTGATAATTGATGAGCTTTTTATGCGGTCGAAGCTGTTTAGATGCATTGTGGTTGAGAATATGGATCAGTTGTTGACGTTAAGCGTCGGGTTCAGGAGGAATTTGCCACTGCCAGCTCCGGCAAATGTTGCGGCGACTCTGCGTTTGAAGGCGATTGAGTTTTTGGAGAAGTGGAATGCTTCATATGGGGTTCATTATCGGCAGATTCGGTTAGGGTTTGACTACCTTAAGAACACGCTTAAGTTTCAGTTCCCGAATCTACAGGCAAATGCAGCGCGGGTTCAGCAGGAGAGGAGGGAAAGGGAGAGGAAGTCGAAAGAGATCTTGGTGAAGAAGTTTCAGAGTCTGGAGGGGAGTTTTGGATCGATAAAGGAAGAGATACAGTCGACGGTTGATGAGATTGGGGAGTGTTTAGAAATTGCATGTGCTAAAGAGGAACATTCGAAGTTTATTCCATTAGATGATGAAGAAGATTTTGAAGAGATTCATTCTTATGAATTACGGCAGTTGCGTTTGCAAACGTTGGAGGAAGAAGATAAAGTTCATGAGAATACTGAAAACAAAGTGGTTTTTGATGCACTGAGGGAGCTTTACAAGCTTTTGTTAACCAAGCATTTGGTTGCAGTCCAAGAATGGATTACTGTTCTTGTGAGGGTCGAACTCAATGATAACAGGTCCAGAGATTCCTATTTGAAAGAGTTCATTGATATCCGGAATCAAATTCAATCGGTGAAAAAGAAGTGCGAAGAATCAGGTTGCACTCTTCTAAACACTGTGAATCCTGATGGAGAAGATATTTGGGAAGAAGGCAATGTCGGATCAGTTGAGACTGGGAGTTCTAGTCGTCCCAGTAACAACATTGAAGATCTTGCTGGGACATCAACATCCACATCTAATGAGGTAAAAGAGAGAAGTTCTAAAGCAGATGGTAATGTGACGAATGCTAAAAAAATCCGCAGTCGTGAAGGTGGTGTAGCCAAGTTAGACCCTCTGAAGAGTAAGCTTTTGGCTGAAGCTCCAGAGGTGAATTGGGGCTCTTACTTGGATAACTGGGGTTCAAAGAGGGATGTATTGGCTAACCAGCGGGGGTTGGAGCTTGAAAGTCATTGGGGCAGAGTGGATCAGGATGCAGTTATCCCAGCAGAAAAGATTGCAGAGTTAAATCTTCAGGCTACTGTATACAAAGAAAAGCAAGTTGATATTCCACCATGCCGAGCTCCATTACGTAATGGAAAACTTTGTCAGAGAAAAGACTTGAGAGTTTGTCCGTTTCATGGATCTATTATTCCCAGAGATGATGAGGGGAAGCCTCTCAATCAAAACCCTTCTAAAGATGAGACAACTCAGGATACAGGGGCCAATTTAGTAGAGCAGTTGGCAAAACAAGCTGTGAAGAATGTTCGCGAGAAAGATAAAGATTTAGCAAGGAAGAGAGAAATTGATAAACTAGCACTGAAGCGTGCAAAGCTTGCGAAAGTACGAGAACACAATGATATGGTTTTACGTGATGCTGCTATGGCTTCTACTTCTAGATCTGCAGCTATTGGAGAAGATTTGGAGGCAGCTAATAGCACGAACCCATCATCCAGGAACAAAAAGAAAACCCTTGCAGCCATGCTGAAGAAGAAAGAGACACCAAAAGATAGATTAGCTCAGAGACTTTTAAACACACGAGCGAGCGCTGCCACTGTAAGACAGCTCACCTTGGGGGCGGATACAAATTACAGAGAAGCCTTCCCAAATCAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2043

Protein Analysis

650

Amino Acids

73.76

Weight (kDa)

8.2

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVSSA_N PF20867 9 - 145 2.9e-36 UVSSA N-terminal domain
DUF2043 PF09740 404 - 506 4.6e-32 Uncharacterized conserved protein (DUF2043)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014390)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61800 AT3G61800
fragaria_vesca FvH4_7g16650
malus_domestica MD01G1082100.v1.1 MD07G1150500.v1.1
prunus_persica Prupe.2G189300_v2.0.a1
pyrus_communis pycom07g14900
rosa_chinensis RchiOBHm_Chr1g0359811
rosa_laevigata RLG00000027852
rosa_multiflora Rmu_ssc0000371.1_g000006
rosa_roxburghii Rroxscaffold_4G00296810
rosa_rugosa Rorug01G0272800
rosa_samantha Rh1AG286700 Rh1BG252600 Rh1CG269800 Rh1DG281600
rosa_wichuraiana Rw1G025460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 114, 140
AccI GTMKAC 2 cut(s) 584, 1377
AccII CGCG 4 cut(s) 79, 168, 475, 1602
AccIII TCCGGA 1 cut(s) 909
AclI AACGTT 1 cut(s) 719
AclWI GGATC 6 cut(s) 162, 270, 568, 1024, 1326, 1483
AcsI RAATTY 2 cut(s) 298, 918
AcuI CTGAAG 5 cut(s) 1211, 1230, 1349, 1673, 1838
AfaI GTAC 1 cut(s) 1677
AfeI AGCGCT 1 cut(s) 1879
AfiI CCNNNNNNNGG 3 cut(s) 88, 178, 1472
AflII CTTAAG 2 cut(s) 425, 437
AgsI TTSAA 7 cut(s) 346, 677, 892, 923, 1061, 1257, 1298
AjnI CCWGG 1 cut(s) 1784
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AloI GAACNNNNNNTCC 2 cut(s) 1766, 1798
Alw21I GWGCWC 2 cut(s) 129, 1417
Alw26I GTCTC 4 cut(s) 1019, 1529, 1823, 1849
AlwI GGATC 6 cut(s) 162, 270, 568, 1024, 1326, 1483
AlwNI CAGNNNCTG 1 cut(s) 544
Aor13HI TCCGGA 1 cut(s) 909
Aor51HI AGCGCT 1 cut(s) 1879
AoxI GGCC 3 cut(s) 90, 99, 1554
ApeKI GCWGC 6 cut(s) 470, 1709, 1736, 1760, 1808, 1880
ApoI RAATTY 2 cut(s) 298, 918
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
Asp700I GAANNNNTTC 2 cut(s) 681, 896
AspLEI GCGC 4 cut(s) 81, 168, 475, 1880
AspS9I GGNCC 2 cut(s) 873, 1554
AsuHPI GGTGA 5 cut(s) 193, 538, 940, 1234, 1891
AsuII TTCGAA 1 cut(s) 641
AvaII GGWCC 1 cut(s) 873
BanII GRGCYC 3 cut(s) 129, 1235, 1417
BauI CACGAG 1 cut(s) 1869
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 129, 1417
BbvI GCAGC 6 cut(s) 482, 1696, 1748, 1772, 1820, 1867
BccI CCATC 4 cut(s) 101, 977, 1118, 1786
BceAI ACGGC 2 cut(s) 86, 716
BciT130I CCWGG 1 cut(s) 1786
BciVI GTATCC 2 cut(s) 1540, 1906
BcoDI GTCTC 4 cut(s) 1019, 1529, 1823, 1849
BfaI CTAG 3 cut(s) 1038, 1646, 1728
BfmI CTRYAG 2 cut(s) 458, 1734
BfoI RGCGCY 1 cut(s) 1881
BfrI CTTAAG 2 cut(s) 425, 437
BfuI GTATCC 2 cut(s) 1540, 1906
BglI GCCNNNNNGGC 1 cut(s) 98
BglII AGATCT 3 cut(s) 519, 1063, 1730
BisI GCNGC 9 cut(s) 112, 138, 330, 471, 1710, 1737, 1761, 1809, 1881
BlsI GCNGC 9 cut(s) 113, 139, 331, 472, 1711, 1738, 1762, 1810, 1882
Bme1390I CCNGG 1 cut(s) 1786
Bme18I GGWCC 1 cut(s) 873
BmgT120I GGNCC 2 cut(s) 873, 1554
BmiI GGNNCC 1 cut(s) 1555
BmrFI CCNGG 1 cut(s) 1786
BmrI ACTGGG 3 cut(s) 1038, 1041, 1258
BmsI GCATC 4 cut(s) 230, 763, 1315, 1696
BmuI ACTGGG 3 cut(s) 1038, 1041, 1258
BpiI GAAGAC 1 cut(s) 18
BpmI CTGGAG 2 cut(s) 566, 1200
Bpu14I TTCGAA 1 cut(s) 641
BpuEI CTTGAG 2 cut(s) 71, 1474
Bsa29I ATCGAT 2 cut(s) 56, 563
BsaAI YACGTR 2 cut(s) 1424, 1703
BsaJI CCNNGG 1 cut(s) 1902
BsaWI WCCGGW 1 cut(s) 909
BsaXI ACNNNNNCTCC 6 cut(s) 9, 39, 494, 524, 1024, 1054
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 178, 1472
Bse1I ACTGG 3 cut(s) 1033, 1047, 1253
Bse3DI GCAATG 1 cut(s) 1015
BseAI TCCGGA 1 cut(s) 909
BseBI CCWGG 1 cut(s) 1786
BseCI ATCGAT 2 cut(s) 56, 563
BseDI CCNNGG 1 cut(s) 1902
BseGI GGATG 4 cut(s) 1082, 1270, 1330, 1781
BseLI CCNNNNNNNGG 3 cut(s) 88, 178, 1472
BseMI GCAATG 1 cut(s) 1015
BseMII CTCAG 4 cut(s) 191, 770, 1556, 1865
BseNI ACTGG 3 cut(s) 1033, 1047, 1253
BseRI GAGGAG 2 cut(s) 74, 505
BseXI GCAGC 6 cut(s) 482, 1696, 1748, 1772, 1820, 1867
BseYI CCCAGC 2 cut(s) 1070, 1336
Bsh1236I CGCG 4 cut(s) 79, 168, 475, 1602
Bsh1285I CGRYCG 2 cut(s) 60, 227
BshFI GGCC 3 cut(s) 92, 101, 1556
BshVI ATCGAT 2 cut(s) 56, 563
BsiEI CGRYCG 2 cut(s) 60, 227
BsiHKAI GWGCWC 2 cut(s) 129, 1417
BsiSI CCGG 2 cut(s) 317, 910
BslFI GGGAC 2 cut(s) 1029, 1087
BslI CCNNNNNNNGG 3 cut(s) 88, 178, 1472
BsmAI GTCTC 4 cut(s) 1019, 1529, 1823, 1849
BsmFI GGGAC 2 cut(s) 1029, 1087
BsmI GAATGC 2 cut(s) 379, 1144
BsnI GGCC 3 cut(s) 92, 101, 1556
Bsp119I TTCGAA 1 cut(s) 641
Bsp1286I GDGCHC 3 cut(s) 129, 1235, 1417
Bsp13I TCCGGA 1 cut(s) 909
Bsp68I TCGCGA 1 cut(s) 1602
BspANI GGCC 3 cut(s) 92, 101, 1556
BspCNI CTCAG 4 cut(s) 190, 771, 1555, 1864
BspDI ATCGAT 2 cut(s) 56, 563
BspEI TCCGGA 1 cut(s) 909
BspFNI CGCG 4 cut(s) 79, 168, 475, 1602
BspHI TCATGA 2 cut(s) 159, 742
BspLI GGNNCC 1 cut(s) 1555
BspMAI CTGCAG 1 cut(s) 1738
BspPI GGATC 6 cut(s) 162, 270, 568, 1024, 1326, 1483
BspT104I TTCGAA 1 cut(s) 641
BspTI CTTAAG 2 cut(s) 425, 437
BsrBI CCGCTC 2 cut(s) 114, 140
BsrDI GCAATG 1 cut(s) 1015
BsrI ACTGG 3 cut(s) 1033, 1047, 1253
BssECI CCNNGG 1 cut(s) 1902
BssNAI GTATAC 1 cut(s) 1378
BssSI CACGAG 1 cut(s) 1869
BssT1I CCWWGG 1 cut(s) 1902
Bst1107I GTATAC 1 cut(s) 1378
Bst2BI CACGAG 1 cut(s) 1869
Bst2UI CCWGG 1 cut(s) 1786
Bst4CI ACNGT 6 cut(s) 582, 589, 841, 973, 1375, 1888
Bst6I CTCTTC 5 cut(s) 567, 672, 966, 1187, 1622
BstAFI CTTAAG 2 cut(s) 425, 437
BstAPI GCANNNNNTGC 2 cut(s) 326, 1667
BstBAI YACGTR 2 cut(s) 1424, 1703
BstBI TTCGAA 1 cut(s) 641
BstC8I GCNNGC 4 cut(s) 312, 1659, 1668, 1876
BstDEI CTNAG 4 cut(s) 177, 779, 1542, 1851
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 4 cut(s) 1082, 1270, 1330, 1781
BstFNI CGCG 4 cut(s) 79, 168, 475, 1602
BstH2I RGCGCY 1 cut(s) 1881
BstHHI GCGC 4 cut(s) 81, 168, 475, 1880
BstMAI GTCTC 4 cut(s) 1019, 1529, 1823, 1849
BstMCI CGRYCG 2 cut(s) 60, 227
BstNI CCWGG 1 cut(s) 1786
BstNSI RCATGY 1 cut(s) 624
BstSCI CCNGG 1 cut(s) 1784
BstSFI CTRYAG 2 cut(s) 458, 1734
BstSNI TACGTA 1 cut(s) 1424
BstUI CGCG 4 cut(s) 79, 168, 475, 1602
BstV1I GCAGC 6 cut(s) 482, 1696, 1748, 1772, 1820, 1867
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 5 cut(s) 154, 519, 1063, 1475, 1730
BstXI CCANNNNNNTGG 2 cut(s) 814, 1944
BstYI RGATCY 5 cut(s) 154, 519, 1063, 1475, 1730
BstZ17I GTATAC 1 cut(s) 1378
Bsu15I ATCGAT 2 cut(s) 56, 563
BsuI GTATCC 2 cut(s) 1540, 1906
BsuRI GGCC 3 cut(s) 92, 101, 1556
BsuTUI ATCGAT 2 cut(s) 56, 563
BtsCI GGATG 4 cut(s) 1082, 1270, 1330, 1781
BtsI GCAGTG 1 cut(s) 305
BtsIMutI CAGTG 6 cut(s) 305, 776, 969, 1649, 1884, 1949
BtuMI TCGCGA 1 cut(s) 1602
Cac8I GCNNGC 4 cut(s) 312, 1659, 1668, 1876
CaiI CAGNNNCTG 1 cut(s) 544
CciI TCATGA 2 cut(s) 159, 742
CfoI GCGC 4 cut(s) 81, 168, 475, 1880
Cfr13I GGNCC 2 cut(s) 873, 1554
ClaI ATCGAT 2 cut(s) 56, 563
CseI GACGC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 1676
CviAII CATG 7 cut(s) 151, 160, 621, 743, 1407, 1472, 1813
CviQI GTAC 1 cut(s) 1676
DdeI CTNAG 4 cut(s) 177, 779, 1542, 1851
DraI TTTAAA 1 cut(s) 1863
Eam1104I CTCTTC 5 cut(s) 567, 672, 966, 1187, 1622
EarI CTCTTC 5 cut(s) 567, 672, 966, 1187, 1622
EciI GGCGGA 2 cut(s) 98, 1925
Ecl136II GAGCTC 2 cut(s) 127, 1415
Eco105I TACGTA 1 cut(s) 1424
Eco130I CCWWGG 1 cut(s) 1902
Eco24I GRGCYC 3 cut(s) 129, 1235, 1417
Eco32I GATATC 1 cut(s) 907
Eco47I GGWCC 1 cut(s) 873
Eco47III AGCGCT 1 cut(s) 1879
Eco53kI GAGCTC 2 cut(s) 127, 1415
Eco57I CTGAAG 5 cut(s) 1211, 1230, 1349, 1673, 1838
EcoICRI GAGCTC 2 cut(s) 127, 1415
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 1784
EcoRV GATATC 1 cut(s) 907
EcoT14I CCWWGG 1 cut(s) 1902
EcoT22I ATGCAT 1 cut(s) 245
EcoT38I GRGCYC 3 cut(s) 129, 1235, 1417
ErhI CCWWGG 1 cut(s) 1902
FaeI CATG 7 cut(s) 154, 163, 624, 746, 1410, 1475, 1816
FaqI GGGAC 2 cut(s) 1029, 1087
FatI CATG 7 cut(s) 150, 159, 620, 742, 1406, 1471, 1812
FauI CCCGC 3 cut(s) 84, 468, 1275
FauNDI CATATG 1 cut(s) 382
FblI GTMKAC 2 cut(s) 584, 1377
Fnu4HI GCNGC 9 cut(s) 112, 138, 330, 471, 1710, 1737, 1761, 1809, 1881
FokI GGATG 4 cut(s) 1069, 1277, 1337, 1768
FriOI GRGCYC 3 cut(s) 129, 1235, 1417
Fsp4HI GCNGC 9 cut(s) 112, 138, 330, 471, 1710, 1737, 1761, 1809, 1881
FspBI CTAG 3 cut(s) 1038, 1646, 1728
GlaI GCGC 4 cut(s) 80, 167, 474, 1879
GluI GCNGC 9 cut(s) 112, 138, 330, 471, 1710, 1737, 1761, 1809, 1881
GsaI CCCAGC 2 cut(s) 1074, 1340
GsuI CTGGAG 2 cut(s) 566, 1200
HaeII RGCGCY 1 cut(s) 1881
HaeIII GGCC 3 cut(s) 92, 101, 1556
HapII CCGG 2 cut(s) 317, 910
HgaI GACGC 1 cut(s) 271
HhaI GCGC 4 cut(s) 81, 168, 475, 1880
Hin1II CATG 7 cut(s) 154, 163, 624, 746, 1410, 1475, 1816
Hin6I GCGC 4 cut(s) 79, 166, 473, 1878
HinP1I GCGC 4 cut(s) 79, 166, 473, 1878
HincII GTYRAC 4 cut(s) 73, 273, 585, 804
HindII GTYRAC 4 cut(s) 73, 273, 585, 804
HindIII AAGCTT 3 cut(s) 794, 1199, 1664
HpaI GTTAAC 1 cut(s) 804
HpaII CCGG 2 cut(s) 317, 910
HphI GGTGA 5 cut(s) 193, 538, 940, 1234, 1891
Hpy166II GTNNAC 5 cut(s) 73, 273, 585, 804, 1378
Hpy188I TCNGA 8 cut(s) 118, 124, 131, 540, 1016, 1191, 1443, 1854
Hpy8I GTNNAC 5 cut(s) 73, 273, 585, 804, 1378
Hpy99I CGWCG 4 cut(s) 52, 107, 287, 589
HpyAV CCTTC 7 cut(s) 16, 37, 340, 998, 1157, 1533, 1942
HpyCH4III ACNGT 6 cut(s) 582, 589, 841, 973, 1375, 1888
HpyCH4IV ACGT 4 cut(s) 275, 719, 1423, 1702
HpyF3I CTNAG 4 cut(s) 177, 779, 1542, 1851
HpySE526I ACGT 4 cut(s) 275, 719, 1423, 1702
Hsp92II CATG 7 cut(s) 154, 163, 624, 746, 1410, 1475, 1816
HspAI GCGC 4 cut(s) 79, 166, 473, 1878
Kpn2I TCCGGA 1 cut(s) 909
KspAI GTTAAC 1 cut(s) 804
LmnI GCTCC 7 cut(s) 119, 132, 319, 784, 1219, 1291, 1420
Lsp1109I GCAGC 6 cut(s) 482, 1696, 1748, 1772, 1820, 1867
LweI GCATC 4 cut(s) 230, 763, 1315, 1696
MaeI CTAG 3 cut(s) 1038, 1646, 1728
MaeII ACGT 4 cut(s) 275, 719, 1423, 1702
MaeIII GTNAC 2 cut(s) 1049, 1132
MbiI CCGCTC 2 cut(s) 114, 140
MflI RGATCY 5 cut(s) 154, 519, 1063, 1475, 1730
MhlI GDGCHC 3 cut(s) 129, 1235, 1417
MluCI AATT 9 cut(s) 204, 298, 615, 695, 918, 1225, 1558, 1635, 1918
MlyI GAGTC 3 cut(s) 126, 328, 550
MmeI TCCRAC 4 cut(s) 154, 702, 994, 1269
Mph1103I ATGCAT 1 cut(s) 245
MroI TCCGGA 1 cut(s) 909
MroXI GAANNNNTTC 2 cut(s) 681, 896
MseI TTAA 6 cut(s) 278, 426, 438, 803, 1358, 1862
MslI CAYNNNNRTG 1 cut(s) 690
MspA1I CMGCKG 1 cut(s) 1282
MspCI CTTAAG 2 cut(s) 425, 437
MspI CCGG 2 cut(s) 317, 910
MspR9I CCNGG 1 cut(s) 1786
Mva1269I GAATGC 2 cut(s) 379, 1144
MvaI CCWGG 1 cut(s) 1786
MvnI CGCG 4 cut(s) 79, 168, 475, 1602
NdeI CATATG 1 cut(s) 382
NlaIII CATG 7 cut(s) 154, 163, 624, 746, 1410, 1475, 1816
NlaIV GGNNCC 1 cut(s) 1555
NmeAIII GCCGAG 1 cut(s) 1436
NmuCI GTSAC 1 cut(s) 1132
NruI TCGCGA 1 cut(s) 1602
NsiI ATGCAT 1 cut(s) 245
NspI RCATGY 1 cut(s) 624
NspV TTCGAA 1 cut(s) 641
PagI TCATGA 2 cut(s) 159, 742
PcsI WCGNNNNNNNCGW 1 cut(s) 706
PctI GAATGC 2 cut(s) 379, 1144
PdmI GAANNNNTTC 2 cut(s) 681, 896
PfeI GAWTC 9 cut(s) 53, 119, 403, 454, 682, 881, 913, 947, 976
PfoI TCCNGGA 1 cut(s) 1784
PkrI GCNGC 9 cut(s) 113, 139, 331, 472, 1711, 1738, 1762, 1810, 1882
Ple19I CGATCG 1 cut(s) 60
PleI GAGTC 3 cut(s) 126, 328, 549
PpsI GAGTC 3 cut(s) 126, 328, 549
Ppu21I YACGTR 2 cut(s) 1424, 1703
Psp124BI GAGCTC 2 cut(s) 129, 1417
Psp1406I AACGTT 1 cut(s) 719
Psp6I CCWGG 1 cut(s) 1784
PspFI CCCAGC 2 cut(s) 1070, 1336
PspGI CCWGG 1 cut(s) 1784
PspN4I GGNNCC 1 cut(s) 1555
PspPI GGNCC 2 cut(s) 873, 1554
PstI CTGCAG 1 cut(s) 1738
PstNI CAGNNNCTG 1 cut(s) 544
PsuI RGATCY 5 cut(s) 154, 519, 1063, 1475, 1730
PvuI CGATCG 1 cut(s) 60
RruI TCGCGA 1 cut(s) 1602
RsaI GTAC 1 cut(s) 1677
RsaNI GTAC 1 cut(s) 1676
RseI CAYNNNNRTG 1 cut(s) 690
SacI GAGCTC 2 cut(s) 129, 1417
SalI GTCGAC 1 cut(s) 583
SaqAI TTAA 6 cut(s) 278, 426, 438, 803, 1358, 1862
SatI GCNGC 9 cut(s) 112, 138, 330, 471, 1710, 1737, 1761, 1809, 1881
Sau96I GGNCC 2 cut(s) 873, 1554
SchI GAGTC 3 cut(s) 126, 328, 550
ScrFI CCNGG 1 cut(s) 1786
SduI GDGCHC 3 cut(s) 129, 1235, 1417
SfaNI GCATC 4 cut(s) 230, 763, 1315, 1696
SfcI CTRYAG 2 cut(s) 458, 1734
SfiI GGCCNNNNNGGCC 1 cut(s) 98
SfuI TTCGAA 1 cut(s) 641
SinI GGWCC 1 cut(s) 873
SmiMI CAYNNNNRTG 1 cut(s) 690
SmlI CTYRAG 4 cut(s) 86, 425, 437, 1453
SmoI CTYRAG 4 cut(s) 86, 425, 437, 1453
SnaBI TACGTA 1 cut(s) 1424
Sse9I AATT 9 cut(s) 204, 298, 615, 695, 918, 1225, 1558, 1635, 1918
SspMI CTAG 3 cut(s) 1038, 1646, 1728
SstI GAGCTC 2 cut(s) 129, 1417
StyD4I CCNGG 1 cut(s) 1784
StyI CCWWGG 1 cut(s) 1902
TaaI ACNGT 6 cut(s) 582, 589, 841, 973, 1375, 1888
TaiI ACGT 4 cut(s) 278, 722, 1426, 1705
TaqI TCGA 9 cut(s) 39, 56, 60, 227, 512, 563, 584, 641, 855
TasI AATT 9 cut(s) 204, 298, 615, 695, 918, 1225, 1558, 1635, 1918
TauI GCSGC 3 cut(s) 114, 140, 332
TfiI GAWTC 9 cut(s) 53, 119, 403, 454, 682, 881, 913, 947, 976
Tru1I TTAA 6 cut(s) 278, 426, 438, 803, 1358, 1862
Tru9I TTAA 6 cut(s) 278, 426, 438, 803, 1358, 1862
TscAI CASTG 6 cut(s) 312, 783, 976, 1656, 1891, 1949
TseFI GTSAC 1 cut(s) 1132
TseI GCWGC 6 cut(s) 470, 1709, 1736, 1760, 1808, 1880
Tsp45I GTSAC 1 cut(s) 1132
TspDTI ATGAA 9 cut(s) 176, 369, 380, 674, 678, 708, 731, 889, 1460
TspGWI ACGGA 3 cut(s) 30, 65, 1455
TspRI CASTG 6 cut(s) 312, 783, 976, 1656, 1891, 1949
Vha464I CTTAAG 2 cut(s) 425, 437
VpaK11BI GGWCC 1 cut(s) 873
XagI CCTNNNNNAGG 1 cut(s) 86
XapI RAATTY 2 cut(s) 298, 918
XbaI TCTAGA 1 cut(s) 1727
XceI RCATGY 1 cut(s) 624
XcmI CCANNNNNNNNNTGG 1 cut(s) 1224
XmiI GTMKAC 2 cut(s) 584, 1377
XmnI GAANNNNTTC 2 cut(s) 681, 896
XspI CTAG 3 cut(s) 1038, 1646, 1728
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.