Rroxscaffold_4G00296810

UV-stimulated scaffold protein A homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0014390
Physical Location & Seq
Forward (+)
16842024 .. 16844501
2478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00296810.1

Sequence Viewer

Length: 1953 bp
ATGGAGGAAGAAGAAGATAGAGGAGGAGGGAAGGTTGGGGTTTTAATCGAGAAGGCGACGGAATCAATCGAACCAGAGGTCGACCCCCGCCTCCTCAAGGCCATCAAGGCCGTCGTCCGCCGCTCCGATTCCGAGCTCCGACTCGCCGCCCATCTTCTCATGGACCTCATGAAGCGCGACCACTCTCAGGTGAGGTATTTAACGCTGCTGATAATTGATGAGCTTTTTATGCGGTCGAAGCTGTTTAGAGGTCTTGTGGTTGAGAATATGGATCAGTTGTTGACGTTAAGCGTCGGGTTTAGAAGGAATTTGCCACTGCCAGCTCCGGCAAATGTTGCGGCTACTCTGCGTTTGAAGGCGATTGAGTTTTTGGAGAAGTGGAATGCTTCGTATGGTGTTCATTATAGGCAGATTAGGTTAGGGTTTGAGTACCTTAAGAACACGCTTAAGTTTCAGTTCCCGAATCTACAGGCAAATGCGGCGCGGGTTCAGCAGGAGAGGAGGGAGAGGGAGAGGAAGTCGAAGGAGATTTTGCTGAAGAAGTTTCAGAGTTTGGAGAGGAGTTTTGGATCGATAAAGGAAGAGATACAGTCGACGGTTGATGAGATTGGGGAGTGTTTAGAAATTGCACGTGCTAAAGAGGAACACTCGCAGTTTGTTCCTTTAGATGATGAAGATTTTGAAGAGATTCATTCTTATGAGTTACGGCAGTTGCGTTTGCAAACGTTGGAAGAAGAAGATAAAATTCATGAGAATACTGAAAACAAAGTGGTTTTTGATGCACTCAGGGAGCTTTACAAGCTTTTGTTAACAAAGCATTTGGCTGCGGTCCAAGAATGGATAACTGTTCTTGTAAGGGTTGAACTGAATGATAACAGGTCCAGAGATTCGTATTTGAAGGAGTTCATTGATATCCGGAATCATATCCAATCAGTGAAGAAGAAGTGTGAAGAAGCTGGTTGCACTCTTCTAAACACTGCAAATCCTGATGAAGAAGATATTTGGGAGGAAGGCAATGTCGGATCAGTTGAGACTGGGAGTTCTAGTCTTCCCAGTAACAACACTGAAGATCGTGCTGGGACATCCACATCCACATCCAATGAGATAAAAGAGGGAATTTCTAAAGCACATGGTAATGTGACAAACAGCAAAAAAACTCGTAGTCGTGAAGGTGGTGTAGCCAAGTTAGATCCTCTGAAGAGTAAGCTTTTGGCTGAAGCTCCAGAGGTGAACTGGGGCTCTTATTTGGATAACTGGGGTTCAAAGAGAGATGTATTGGCTAACCACCGGGGTTTGGAGCTTGAAAGTCATTGGGGCAGAGTAGATCAGGATGCAGTTATCCCAGCAGATAAGATTGCAGAGTTAAATCTTCAGGCTACTGTATACAAAGAAAAGCAAGTTGATATTCCACCATGCCGAGCTCCATTAAGTAATGGAAAACTTTGTAAAAGAAAAGACTTGAGAGTTTGTCCATTTCATGGACCTATTATTCCCAGAGATGATGAGGGGAAGCCTCTGAATCAGAACCCTTCTATAGATGAGACAACTCTGGATACGGGGGCCACAGGGGACAATCTAGTAGAGCAGTTGGCGAAACAAGCCGTGAAGAATGTTCGTGAGAAAGATAAAGAGTTAGCAAGGAAGAGAGAAATTGATAAACAGGCACTGAAGCGTGCAAAGCTTGCGAAAGTACGAGAACACAATGATTTGGTTTTACGTGATGCTGCTATGGCTTCGACTTCTAGATCTGCAGCTATCGGAGAAGATTTGGAGGCAAACCCATCATCCAGAAACAAAAAGAAAACCCTTGCAGCCATGCTGAAGAAGAAAGAAACACCAAAAGATAGATTAGCTCAGAGGCTTTTAAACACACGAGCGAGTGCTGCCACTGTAAGACAGCTTACCTTGGGGGCGGATACTAATTACAGAGAAGCCTTCCCGAATCAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2043

Protein Analysis

650

Amino Acids

73.79

Weight (kDa)

7.23

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVSSA_N PF20867 12 - 148 1.1e-36 UVSSA N-terminal domain
DUF2043 PF09740 406 - 508 1.7e-31 Uncharacterized conserved protein (DUF2043)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014390)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61800 AT3G61800
fragaria_vesca FvH4_7g16650
malus_domestica MD01G1082100.v1.1 MD07G1150500.v1.1
prunus_persica Prupe.2G189300_v2.0.a1
pyrus_communis pycom07g14900
rosa_chinensis RchiOBHm_Chr1g0359811
rosa_laevigata RLG00000027852
rosa_multiflora Rmu_ssc0000371.1_g000006
rosa_roxburghii Rroxscaffold_4G00296810
rosa_rugosa Rorug01G0272800
rosa_samantha Rh1AG286700 Rh1BG252600 Rh1CG269800 Rh1DG281600
rosa_wichuraiana Rw1G025460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1478
AccBSI CCGCTC 1 cut(s) 123
AccI GTMKAC 3 cut(s) 81, 593, 1383
AccII CGCG 2 cut(s) 177, 484
AccIII TCCGGA 1 cut(s) 915
AclI AACGTT 1 cut(s) 725
AclWI GGATC 4 cut(s) 279, 577, 1030, 1184
AcsI RAATTY 3 cut(s) 307, 744, 1116
AcuI CTGAAG 7 cut(s) 557, 1086, 1217, 1236, 1355, 1688, 1841
AcvI CACGTG 1 cut(s) 632
AfaI GTAC 2 cut(s) 431, 1692
AfiI CCNNNNNNNGG 4 cut(s) 97, 187, 1294, 1478
AflII CTTAAG 2 cut(s) 434, 446
AgsI TTSAA 6 cut(s) 355, 683, 863, 898, 1263, 1304
Alw21I GWGCWC 2 cut(s) 138, 1423
Alw26I GTCTC 2 cut(s) 1025, 1535
AlwI GGATC 4 cut(s) 279, 577, 1030, 1184
AlwNI CAGNNNCTG 1 cut(s) 1666
Aor13HI TCCGGA 1 cut(s) 915
AoxI GGCC 3 cut(s) 99, 108, 1560
ApeKI GCWGC 6 cut(s) 205, 824, 1724, 1751, 1811, 1883
ApoI RAATTY 3 cut(s) 307, 744, 1116
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
Asp700I GAANNNNTTC 2 cut(s) 687, 902
AspLEI GCGC 2 cut(s) 177, 484
AspS9I GGNCC 5 cut(s) 163, 829, 879, 1481, 1560
AsuC2I CCSGG 1 cut(s) 1289
AsuHPI GGTGA 2 cut(s) 202, 1240
AvaII GGWCC 4 cut(s) 163, 829, 879, 1481
BanII GRGCYC 3 cut(s) 138, 1241, 1423
BauI CACGAG 1 cut(s) 1872
BbrPI CACGTG 1 cut(s) 632
BbsI GAAGAC 1 cut(s) 1040
Bbv12I GWGCWC 2 cut(s) 138, 1423
BbvI GCAGC 6 cut(s) 192, 811, 1711, 1763, 1823, 1870
BccI CCATC 3 cut(s) 110, 159, 1789
BceAI ACGGC 3 cut(s) 95, 722, 1586
BciVI GTATCC 2 cut(s) 1546, 1909
BcnI CCSGG 1 cut(s) 1289
BcoDI GTCTC 2 cut(s) 1025, 1535
BfaI CTAG 3 cut(s) 1044, 1577, 1743
BfmI CTRYAG 3 cut(s) 467, 1533, 1749
BfrI CTTAAG 2 cut(s) 434, 446
BfuI GTATCC 2 cut(s) 1546, 1909
BglI GCCNNNNNGGC 1 cut(s) 107
BglII AGATCT 1 cut(s) 1745
Bme1390I CCNGG 1 cut(s) 1289
Bme18I GGWCC 4 cut(s) 163, 829, 879, 1481
BmgT120I GGNCC 5 cut(s) 163, 829, 879, 1481, 1560
BmiI GGNNCC 1 cut(s) 1561
BmrFI CCNGG 1 cut(s) 1289
BmrI ACTGGG 4 cut(s) 1044, 1047, 1243, 1264
BmsI GCATC 3 cut(s) 769, 1321, 1711
BmuI ACTGGG 4 cut(s) 1044, 1047, 1243, 1264
BpiI GAAGAC 1 cut(s) 1040
BplI GAGNNNNNCTC 2 cut(s) 632, 664
BpmI CTGGAG 1 cut(s) 1206
BpuEI CTTGAG 2 cut(s) 80, 1480
BpuMI CCSGG 1 cut(s) 1289
Bsa29I ATCGAT 1 cut(s) 572
BsaAI YACGTR 2 cut(s) 632, 1718
BsaJI CCNNGG 2 cut(s) 1288, 1905
BsaWI WCCGGW 1 cut(s) 915
BsaXI ACNNNNNCTCC 6 cut(s) 18, 48, 503, 533, 1030, 1060
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 187, 1294, 1478
Bse1I ACTGG 4 cut(s) 1039, 1053, 1238, 1259
Bse3DI GCAATG 1 cut(s) 1021
BseAI TCCGGA 1 cut(s) 915
BseCI ATCGAT 1 cut(s) 572
BseDI CCNNGG 2 cut(s) 1288, 1905
BseGI GGATG 5 cut(s) 1082, 1088, 1094, 1336, 1784
BseLI CCNNNNNNNGG 4 cut(s) 97, 187, 1294, 1478
BseMI GCAATG 1 cut(s) 1021
BseMII CTCAG 3 cut(s) 200, 799, 1868
BseNI ACTGG 4 cut(s) 1039, 1053, 1238, 1259
BseRI GAGGAG 5 cut(s) 36, 39, 83, 514, 574
BseXI GCAGC 6 cut(s) 192, 811, 1711, 1763, 1823, 1870
BseYI CCCAGC 2 cut(s) 1076, 1342
Bsh1236I CGCG 2 cut(s) 177, 484
Bsh1285I CGRYCG 1 cut(s) 236
BshFI GGCC 3 cut(s) 101, 110, 1562
BshVI ATCGAT 1 cut(s) 572
BsiEI CGRYCG 1 cut(s) 236
BsiHKAI GWGCWC 2 cut(s) 138, 1423
BsiSI CCGG 3 cut(s) 326, 916, 1288
BslFI GGGAC 2 cut(s) 1093, 1583
BslI CCNNNNNNNGG 4 cut(s) 97, 187, 1294, 1478
BsmAI GTCTC 2 cut(s) 1025, 1535
BsmFI GGGAC 2 cut(s) 1093, 1583
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 3 cut(s) 101, 110, 1562
Bsp1286I GDGCHC 3 cut(s) 138, 1241, 1423
Bsp13I TCCGGA 1 cut(s) 915
Bsp143I GATC 7 cut(s) 271, 569, 1022, 1069, 1189, 1324, 1745
BspANI GGCC 3 cut(s) 101, 110, 1562
BspCNI CTCAG 3 cut(s) 199, 798, 1867
BspDI ATCGAT 1 cut(s) 572
BspEI TCCGGA 1 cut(s) 915
BspFNI CGCG 2 cut(s) 177, 484
BspHI TCATGA 2 cut(s) 168, 748
BspLI GGNNCC 1 cut(s) 1561
BspMAI CTGCAG 1 cut(s) 1753
BspPI GGATC 4 cut(s) 279, 577, 1030, 1184
BspTI CTTAAG 2 cut(s) 434, 446
BsrBI CCGCTC 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 1021
BsrI ACTGG 4 cut(s) 1039, 1053, 1238, 1259
BssECI CCNNGG 2 cut(s) 1288, 1905
BssMI GATC 7 cut(s) 271, 569, 1022, 1069, 1189, 1324, 1745
BssNAI GTATAC 1 cut(s) 1384
BssSI CACGAG 1 cut(s) 1872
BssT1I CCWWGG 1 cut(s) 1905
Bst1107I GTATAC 1 cut(s) 1384
Bst2BI CACGAG 1 cut(s) 1872
Bst4CI ACNGT 5 cut(s) 591, 598, 847, 1381, 1891
Bst6I CTCTTC 5 cut(s) 576, 678, 972, 1193, 1637
BstAFI CTTAAG 2 cut(s) 434, 446
BstAPI GCANNNNNTGC 2 cut(s) 335, 1682
BstBAI YACGTR 2 cut(s) 632, 1718
BstC8I GCNNGC 3 cut(s) 321, 1674, 1683
BstDEI CTNAG 3 cut(s) 186, 785, 1854
BstENI CCTNNNNNAGG 1 cut(s) 95
BstF5I GGATG 5 cut(s) 1082, 1088, 1094, 1336, 1784
BstFNI CGCG 2 cut(s) 177, 484
BstHHI GCGC 2 cut(s) 177, 484
BstKTI GATC 7 cut(s) 274, 572, 1025, 1072, 1192, 1327, 1748
BstMAI GTCTC 2 cut(s) 1025, 1535
BstMBI GATC 7 cut(s) 271, 569, 1022, 1069, 1189, 1324, 1745
BstMCI CGRYCG 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 1287
BstSFI CTRYAG 3 cut(s) 467, 1533, 1749
BstUI CGCG 2 cut(s) 177, 484
BstV1I GCAGC 6 cut(s) 192, 811, 1711, 1763, 1823, 1870
BstV2I GAAGAC 1 cut(s) 1040
BstX2I RGATCY 2 cut(s) 1189, 1745
BstYI RGATCY 2 cut(s) 1189, 1745
BstZ17I GTATAC 1 cut(s) 1384
Bsu15I ATCGAT 1 cut(s) 572
BsuI GTATCC 2 cut(s) 1546, 1909
BsuRI GGCC 3 cut(s) 101, 110, 1562
BsuTUI ATCGAT 1 cut(s) 572
BtsCI GGATG 5 cut(s) 1082, 1088, 1094, 1336, 1784
BtsI GCAGTG 2 cut(s) 314, 975
BtsIMutI CAGTG 7 cut(s) 314, 939, 975, 1062, 1664, 1887, 1952
Cac8I GCNNGC 3 cut(s) 321, 1674, 1683
CaiI CAGNNNCTG 1 cut(s) 1666
CciI TCATGA 2 cut(s) 168, 748
CfoI GCGC 2 cut(s) 177, 484
Cfr13I GGNCC 5 cut(s) 163, 829, 879, 1481, 1560
ClaI ATCGAT 1 cut(s) 572
CseI GACGC 1 cut(s) 280
Csp6I GTAC 2 cut(s) 430, 1691
CviAII CATG 7 cut(s) 160, 169, 749, 1130, 1413, 1478, 1816
CviQI GTAC 2 cut(s) 430, 1691
DdeI CTNAG 3 cut(s) 186, 785, 1854
DpnI GATC 7 cut(s) 273, 571, 1024, 1071, 1191, 1326, 1747
DpnII GATC 7 cut(s) 271, 569, 1022, 1069, 1189, 1324, 1745
DraI TTTAAA 1 cut(s) 1866
Eam1104I CTCTTC 5 cut(s) 576, 678, 972, 1193, 1637
EarI CTCTTC 5 cut(s) 576, 678, 972, 1193, 1637
EciI GGCGGA 2 cut(s) 107, 1928
Ecl136II GAGCTC 2 cut(s) 136, 1421
Eco130I CCWWGG 1 cut(s) 1905
Eco24I GRGCYC 3 cut(s) 138, 1241, 1423
Eco32I GATATC 1 cut(s) 913
Eco47I GGWCC 4 cut(s) 163, 829, 879, 1481
Eco53kI GAGCTC 2 cut(s) 136, 1421
Eco57I CTGAAG 7 cut(s) 557, 1086, 1217, 1236, 1355, 1688, 1841
Eco72I CACGTG 1 cut(s) 632
EcoICRI GAGCTC 2 cut(s) 136, 1421
EcoNI CCTNNNNNAGG 1 cut(s) 95
EcoRV GATATC 1 cut(s) 913
EcoT14I CCWWGG 1 cut(s) 1905
EcoT38I GRGCYC 3 cut(s) 138, 1241, 1423
ErhI CCWWGG 1 cut(s) 1905
FaeI CATG 7 cut(s) 163, 172, 752, 1133, 1416, 1481, 1819
FaqI GGGAC 2 cut(s) 1093, 1583
FatI CATG 7 cut(s) 159, 168, 748, 1129, 1412, 1477, 1815
FauI CCCGC 2 cut(s) 95, 477
FblI GTMKAC 3 cut(s) 81, 593, 1383
FokI GGATG 5 cut(s) 1069, 1075, 1081, 1343, 1771
FriOI GRGCYC 3 cut(s) 138, 1241, 1423
FspBI CTAG 3 cut(s) 1044, 1577, 1743
GlaI GCGC 2 cut(s) 176, 483
GsaI CCCAGC 2 cut(s) 1080, 1346
GsuI CTGGAG 1 cut(s) 1206
HaeIII GGCC 3 cut(s) 101, 110, 1562
HapII CCGG 3 cut(s) 326, 916, 1288
HgaI GACGC 1 cut(s) 280
HhaI GCGC 2 cut(s) 177, 484
Hin1II CATG 7 cut(s) 163, 172, 752, 1133, 1416, 1481, 1819
Hin6I GCGC 2 cut(s) 175, 482
HinP1I GCGC 2 cut(s) 175, 482
HincII GTYRAC 4 cut(s) 82, 282, 594, 810
HindII GTYRAC 4 cut(s) 82, 282, 594, 810
HindIII AAGCTT 3 cut(s) 800, 1205, 1679
HinfI GANTC 9 cut(s) 62, 128, 141, 463, 688, 887, 919, 1519, 1942
HpaI GTTAAC 1 cut(s) 810
HpaII CCGG 3 cut(s) 326, 916, 1288
HphI GGTGA 2 cut(s) 202, 1240
Hpy166II GTNNAC 6 cut(s) 82, 282, 594, 810, 1231, 1384
Hpy8I GTNNAC 6 cut(s) 82, 282, 594, 810, 1231, 1384
Hpy99I CGWCG 4 cut(s) 61, 116, 296, 598
HpyCH4III ACNGT 5 cut(s) 591, 598, 847, 1381, 1891
HpyCH4IV ACGT 4 cut(s) 284, 631, 725, 1717
HpyF3I CTNAG 3 cut(s) 186, 785, 1854
HpySE526I ACGT 4 cut(s) 284, 631, 725, 1717
Hsp92II CATG 7 cut(s) 163, 172, 752, 1133, 1416, 1481, 1819
HspAI GCGC 2 cut(s) 175, 482
Kpn2I TCCGGA 1 cut(s) 915
KspAI GTTAAC 1 cut(s) 810
Kzo9I GATC 7 cut(s) 271, 569, 1022, 1069, 1189, 1324, 1745
LmnI GCTCC 7 cut(s) 128, 141, 328, 790, 1225, 1297, 1426
Lsp1109I GCAGC 6 cut(s) 192, 811, 1711, 1763, 1823, 1870
LweI GCATC 3 cut(s) 769, 1321, 1711
MaeI CTAG 3 cut(s) 1044, 1577, 1743
MaeII ACGT 4 cut(s) 284, 631, 725, 1717
MaeIII GTNAC 3 cut(s) 702, 1055, 1138
MalI GATC 7 cut(s) 273, 571, 1024, 1071, 1191, 1326, 1747
MbiI CCGCTC 1 cut(s) 123
MboI GATC 7 cut(s) 271, 569, 1022, 1069, 1189, 1324, 1745
MflI RGATCY 2 cut(s) 1189, 1745
MhlI GDGCHC 3 cut(s) 138, 1241, 1423
MluCI AATT 7 cut(s) 213, 307, 624, 744, 1116, 1650, 1921
MlyI GAGTC 1 cut(s) 135
MmeI TCCRAC 3 cut(s) 163, 708, 1000
MroI TCCGGA 1 cut(s) 915
MroXI GAANNNNTTC 2 cut(s) 687, 902
MseI TTAA 9 cut(s) 44, 200, 287, 435, 447, 809, 1364, 1427, 1865
MslI CAYNNNNRTG 2 cut(s) 696, 1134
MspCI CTTAAG 2 cut(s) 434, 446
MspI CCGG 3 cut(s) 326, 916, 1288
MspR9I CCNGG 1 cut(s) 1289
Mva1269I GAATGC 1 cut(s) 388
MvnI CGCG 2 cut(s) 177, 484
NciI CCSGG 1 cut(s) 1289
NdeII GATC 7 cut(s) 271, 569, 1022, 1069, 1189, 1324, 1745
NlaIII CATG 7 cut(s) 163, 172, 752, 1133, 1416, 1481, 1819
NlaIV GGNNCC 1 cut(s) 1561
NmeAIII GCCGAG 1 cut(s) 1442
NmuCI GTSAC 1 cut(s) 1138
PagI TCATGA 2 cut(s) 168, 748
PcsI WCGNNNNNNNCGW 1 cut(s) 712
PctI GAATGC 1 cut(s) 388
PdmI GAANNNNTTC 2 cut(s) 687, 902
PfeI GAWTC 8 cut(s) 62, 128, 463, 688, 887, 919, 1519, 1942
PflMI CCANNNNNTGG 1 cut(s) 1478
PleI GAGTC 1 cut(s) 135
PmaCI CACGTG 1 cut(s) 632
PmlI CACGTG 1 cut(s) 632
PpsI GAGTC 1 cut(s) 135
Ppu21I YACGTR 2 cut(s) 632, 1718
Psp124BI GAGCTC 2 cut(s) 138, 1423
Psp1406I AACGTT 1 cut(s) 725
PspCI CACGTG 1 cut(s) 632
PspFI CCCAGC 2 cut(s) 1076, 1342
PspN4I GGNNCC 1 cut(s) 1561
PspPI GGNCC 5 cut(s) 163, 829, 879, 1481, 1560
PstI CTGCAG 1 cut(s) 1753
PstNI CAGNNNCTG 1 cut(s) 1666
PsuI RGATCY 2 cut(s) 1189, 1745
RsaI GTAC 2 cut(s) 431, 1692
RsaNI GTAC 2 cut(s) 430, 1691
RseI CAYNNNNRTG 2 cut(s) 696, 1134
SacI GAGCTC 2 cut(s) 138, 1423
SalI GTCGAC 2 cut(s) 80, 592
SaqAI TTAA 9 cut(s) 44, 200, 287, 435, 447, 809, 1364, 1427, 1865
Sau3AI GATC 7 cut(s) 271, 569, 1022, 1069, 1189, 1324, 1745
Sau96I GGNCC 5 cut(s) 163, 829, 879, 1481, 1560
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 1289
SduI GDGCHC 3 cut(s) 138, 1241, 1423
SfaNI GCATC 3 cut(s) 769, 1321, 1711
SfcI CTRYAG 3 cut(s) 467, 1533, 1749
SfiI GGCCNNNNNGGCC 1 cut(s) 107
SinI GGWCC 4 cut(s) 163, 829, 879, 1481
SmiMI CAYNNNNRTG 2 cut(s) 696, 1134
SmlI CTYRAG 4 cut(s) 95, 434, 446, 1459
SmoI CTYRAG 4 cut(s) 95, 434, 446, 1459
Sse9I AATT 7 cut(s) 213, 307, 624, 744, 1116, 1650, 1921
SspMI CTAG 3 cut(s) 1044, 1577, 1743
SstI GAGCTC 2 cut(s) 138, 1423
StyD4I CCNGG 1 cut(s) 1287
StyI CCWWGG 1 cut(s) 1905
TaaI ACNGT 5 cut(s) 591, 598, 847, 1381, 1891
TaiI ACGT 4 cut(s) 287, 634, 728, 1720
TaqI TCGA 8 cut(s) 48, 69, 81, 236, 521, 572, 593, 1736
TasI AATT 7 cut(s) 213, 307, 624, 744, 1116, 1650, 1921
TauI GCSGC 4 cut(s) 123, 149, 341, 482
TfiI GAWTC 8 cut(s) 62, 128, 463, 688, 887, 919, 1519, 1942
Tru1I TTAA 9 cut(s) 44, 200, 287, 435, 447, 809, 1364, 1427, 1865
Tru9I TTAA 9 cut(s) 44, 200, 287, 435, 447, 809, 1364, 1427, 1865
TscAI CASTG 7 cut(s) 321, 939, 982, 1069, 1671, 1894, 1952
TseFI GTSAC 1 cut(s) 1138
TseI GCWGC 6 cut(s) 205, 824, 1724, 1751, 1811, 1883
Tsp45I GTSAC 1 cut(s) 1138
TspDTI ATGAA 8 cut(s) 185, 389, 680, 687, 737, 895, 1005, 1466
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 7 cut(s) 321, 939, 982, 1069, 1671, 1894, 1952
Van91I CCANNNNNTGG 1 cut(s) 1478
Vha464I CTTAAG 2 cut(s) 434, 446
VpaK11BI GGWCC 4 cut(s) 163, 829, 879, 1481
XagI CCTNNNNNAGG 1 cut(s) 95
XapI RAATTY 3 cut(s) 307, 744, 1116
XbaI TCTAGA 1 cut(s) 1742
XcmI CCANNNNNNNNNTGG 1 cut(s) 1230
XmiI GTMKAC 3 cut(s) 81, 593, 1383
XmnI GAANNNNTTC 2 cut(s) 687, 902
XspI CTAG 3 cut(s) 1044, 1577, 1743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.