E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G61790 |
| fragaria_vesca | FvH4_7g16630 |
| malus_domestica | MD01G1082000.v1.1 MD07G1150400.v1.1 |
| prunus_persica | Prupe.2G189200_v2.0.a1 Prupe.2G189200_v2.0.a1 |
| pyrus_communis | pycom01g10960 pycom07g14890 |
| rosa_chinensis | RchiOBHm_Chr1g0359721 RchiOBHm_Chr1g0359801 |
| rosa_laevigata | RLG00000027853 |
| rosa_multiflora | Rmu_ssc0000371.1_g000007 |
| rosa_roxburghii | Rroxscaffold_4G00296820 |
| rosa_rugosa | Rorug01G0272800 |
| rosa_samantha | Rh1AG286500 Rh1AG286600 Rh1BG252300 Rh1BG252500 Rh1CG269700 Rh1DG281500 |
| rosa_wichuraiana | Rw1G025450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2759 |
| AasI | GACNNNNNNGTC | 3 cut(s) | 1429, 3117, 3218 |
| Acc36I | ACCTGC | 2 cut(s) | 1952, 2239 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2323, 2678 |
| AccBSI | CCGCTC | 1 cut(s) | 2263 |
| AccI | GTMKAC | 1 cut(s) | 3454 |
| AccII | CGCG | 1 cut(s) | 211 |
| AciI | CCGC | 4 cut(s) | 2263, 3102, 3425, 3626 |
| AclI | AACGTT | 1 cut(s) | 3296 |
| AclWI | GGATC | 6 cut(s) | 12, 2720, 2773, 3525, 3629, 3642 |
| AcoI | YGGCCR | 1 cut(s) | 903 |
| AcsI | RAATTY | 7 cut(s) | 879, 898, 1577, 2030, 2368, 2639, 2882 |
| AcuI | CTGAAG | 7 cut(s) | 737, 861, 1299, 1434, 1584, 2427, 3681 |
| AcyI | GRCGYC | 1 cut(s) | 3234 |
| AdeI | CACNNNGTG | 1 cut(s) | 1088 |
| AfaI | GTAC | 3 cut(s) | 496, 1952, 2007 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 1174, 1946, 2323, 2382, 2678, 2689 |
| AflIII | ACRYGT | 1 cut(s) | 1872 |
| AgeI | ACCGGT | 1 cut(s) | 794 |
| AhlI | ACTAGT | 2 cut(s) | 1739, 3569 |
| AjiI | CACGTC | 2 cut(s) | 2277, 3498 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 143, 175 |
| Alw21I | GWGCWC | 6 cut(s) | 407, 2073, 2276, 3255, 3271, 3379 |
| Alw26I | GTCTC | 6 cut(s) | 1415, 2699, 2934, 3062, 3225, 3431 |
| AlwI | GGATC | 6 cut(s) | 12, 2720, 2773, 3525, 3629, 3642 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 602, 632, 1606, 2192, 2636, 3470 |
| ApoI | RAATTY | 7 cut(s) | 879, 898, 1577, 2030, 2368, 2639, 2882 |
| AsiGI | ACCGGT | 1 cut(s) | 794 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 708, 879 |
| AspLEI | GCGC | 4 cut(s) | 418, 930, 3150, 3284 |
| AspS9I | GGNCC | 6 cut(s) | 792, 1632, 1976, 2189, 2977, 3417 |
| AsuC2I | CCSGG | 1 cut(s) | 3535 |
| AsuHPI | GGTGA | 8 cut(s) | 184, 473, 1289, 1666, 1855, 2279, 2355, 2915 |
| AsuII | TTCGAA | 2 cut(s) | 2744, 3043 |
| AsuNHI | GCTAGC | 2 cut(s) | 1888, 2992 |
| AvaII | GGWCC | 1 cut(s) | 792 |
| BalI | TGGCCA | 1 cut(s) | 905 |
| BamHI | GGATCC | 1 cut(s) | 3634 |
| BanII | GRGCYC | 5 cut(s) | 221, 407, 1674, 2073, 3337 |
| BauI | CACGAG | 1 cut(s) | 813 |
| BbsI | GAAGAC | 3 cut(s) | 849, 2558, 2852 |
| Bbv12I | GWGCWC | 6 cut(s) | 407, 2073, 2276, 3255, 3271, 3379 |
| BccI | CCATC | 8 cut(s) | 104, 428, 818, 1268, 1562, 1594, 2453, 3524 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 595, 629, 3023, 3057 |
| BclI | TGATCA | 1 cut(s) | 1369 |
| BcnI | CCSGG | 1 cut(s) | 3535 |
| BcoDI | GTCTC | 6 cut(s) | 1415, 2699, 2934, 3062, 3225, 3431 |
| BcuI | ACTAGT | 2 cut(s) | 1739, 3569 |
| BfaI | CTAG | 9 cut(s) | 63, 222, 1740, 1775, 1889, 2135, 2219, 2993, 3570 |
| BfmI | CTRYAG | 7 cut(s) | 521, 614, 2235, 2246, 3285, 3319, 3455 |
| BfoI | RGCGCY | 2 cut(s) | 931, 3151 |
| BfuAI | ACCTGC | 2 cut(s) | 1952, 2239 |
| BglII | AGATCT | 1 cut(s) | 1261 |
| BlpI | GCTNAGC | 1 cut(s) | 3546 |
| Bme18I | GGWCC | 1 cut(s) | 792 |
| BmgBI | CACGTC | 2 cut(s) | 2277, 3498 |
| BmgT120I | GGNCC | 6 cut(s) | 792, 1632, 1976, 2189, 2977, 3417 |
| BmiI | GGNNCC | 4 cut(s) | 793, 3418, 3447, 3636 |
| BmsI | GCATC | 6 cut(s) | 796, 1087, 1180, 1556, 3026, 3547 |
| BmtI | GCTAGC | 2 cut(s) | 1892, 2996 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3393 |
| BpiI | GAAGAC | 3 cut(s) | 849, 2558, 2852 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3237, 3269 |
| BpmI | CTGGAG | 3 cut(s) | 268, 1950, 3021 |
| Bpu10I | CCTNAGC | 3 cut(s) | 406, 2127, 3480 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3546 |
| Bpu14I | TTCGAA | 2 cut(s) | 2744, 3043 |
| BpuEI | CTTGAG | 2 cut(s) | 1094, 2087 |
| BpuMI | CCSGG | 1 cut(s) | 3535 |
| BsaAI | YACGTR | 1 cut(s) | 1790 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1260 |
| BsaHI | GRCGYC | 1 cut(s) | 3234 |
| BsaI | GGTCTC | 2 cut(s) | 2699, 3431 |
| BsaWI | WCCGGW | 2 cut(s) | 794, 3217 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 172, 202 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 1174, 1946, 2323, 2382, 2678, 2689 |
| Bse118I | RCCGGY | 2 cut(s) | 794, 3236 |
| Bse1I | ACTGG | 1 cut(s) | 3675 |
| Bse3DI | GCAATG | 2 cut(s) | 2218, 2540 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1260 |
| BseGI | GGATG | 7 cut(s) | 420, 508, 625, 811, 1030, 2228, 2372 |
| BseJI | GATNNNNATC | 1 cut(s) | 1260 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 1174, 1946, 2323, 2382, 2678, 2689 |
| BseMI | GCAATG | 2 cut(s) | 2218, 2540 |
| BseMII | CTCAG | 9 cut(s) | 420, 599, 1343, 1481, 2141, 3329, 3494, 3537, 3546 |
| BseNI | ACTGG | 1 cut(s) | 3675 |
| BseYI | CCCAGC | 1 cut(s) | 3413 |
| Bsh1236I | CGCG | 1 cut(s) | 211 |
| BshTI | ACCGGT | 1 cut(s) | 794 |
| BsiHKAI | GWGCWC | 6 cut(s) | 407, 2073, 2276, 3255, 3271, 3379 |
| BsiSI | CCGG | 4 cut(s) | 795, 3218, 3237, 3535 |
| BslFI | GGGAC | 4 cut(s) | 805, 1185, 1585, 3416 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 1174, 1946, 2323, 2382, 2678, 2689 |
| BsmAI | GTCTC | 6 cut(s) | 1415, 2699, 2934, 3062, 3225, 3431 |
| BsmBI | CGTCTC | 1 cut(s) | 3225 |
| BsmFI | GGGAC | 4 cut(s) | 805, 1185, 1585, 3416 |
| BsmI | GAATGC | 3 cut(s) | 532, 893, 1009 |
| Bso31I | GGTCTC | 2 cut(s) | 2699, 3431 |
| Bsp119I | TTCGAA | 2 cut(s) | 2744, 3043 |
| Bsp1286I | GDGCHC | 9 cut(s) | 221, 407, 1674, 2073, 2276, 3255, 3271, 3337, 3379 |
| Bsp1407I | TGTACA | 1 cut(s) | 2005 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3546 |
| Bsp19I | CCATGG | 3 cut(s) | 2284, 2592, 2987 |
| BspACI | CCGC | 4 cut(s) | 2263, 3102, 3425, 3626 |
| BspCNI | CTCAG | 9 cut(s) | 419, 598, 1342, 1480, 2140, 3330, 3493, 3538, 3547 |
| BspFNI | CGCG | 1 cut(s) | 211 |
| BspHI | TCATGA | 4 cut(s) | 394, 1372, 2703, 3379 |
| BspLI | GGNNCC | 4 cut(s) | 793, 3418, 3447, 3636 |
| BspMAI | CTGCAG | 5 cut(s) | 525, 618, 2239, 2250, 3289 |
| BspMI | ACCTGC | 2 cut(s) | 1952, 2239 |
| BspOI | GCTAGC | 2 cut(s) | 1892, 2996 |
| BspPI | GGATC | 6 cut(s) | 12, 2720, 2773, 3525, 3629, 3642 |
| BspT104I | TTCGAA | 2 cut(s) | 2744, 3043 |
| BspTNI | GGTCTC | 2 cut(s) | 2699, 3431 |
| BsrBI | CCGCTC | 1 cut(s) | 2263 |
| BsrDI | GCAATG | 2 cut(s) | 2218, 2540 |
| BsrFI | RCCGGY | 2 cut(s) | 794, 3236 |
| BsrGI | TGTACA | 1 cut(s) | 2005 |
| BsrI | ACTGG | 1 cut(s) | 3675 |
| BssAI | RCCGGY | 2 cut(s) | 794, 3236 |
| BssNI | GRCGYC | 1 cut(s) | 3234 |
| BssSI | CACGAG | 1 cut(s) | 813 |
| BssT1I | CCWWGG | 4 cut(s) | 2284, 2592, 2987, 3441 |
| Bst2BI | CACGAG | 1 cut(s) | 813 |
| Bst6I | CTCTTC | 2 cut(s) | 170, 681 |
| BstACI | GRCGYC | 1 cut(s) | 3234 |
| BstAPI | GCANNNNNTGC | 6 cut(s) | 632, 1106, 2254, 2441, 2894, 3284 |
| BstAUI | TGTACA | 1 cut(s) | 2005 |
| BstBAI | YACGTR | 1 cut(s) | 1790 |
| BstBI | TTCGAA | 2 cut(s) | 2744, 3043 |
| BstC8I | GCNNGC | 5 cut(s) | 907, 1056, 1890, 2994, 3280 |
| BstDSI | CCRYGG | 4 cut(s) | 2284, 2592, 2987, 3391 |
| BstF5I | GGATG | 7 cut(s) | 420, 508, 625, 811, 1030, 2228, 2372 |
| BstFNI | CGCG | 1 cut(s) | 211 |
| BstH2I | RGCGCY | 2 cut(s) | 931, 3151 |
| BstHHI | GCGC | 4 cut(s) | 418, 930, 3150, 3284 |
| BstMAI | GTCTC | 6 cut(s) | 1415, 2699, 2934, 3062, 3225, 3431 |
| BstNSI | RCATGY | 3 cut(s) | 495, 1876, 3282 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3393 |
| BstSFI | CTRYAG | 7 cut(s) | 521, 614, 2235, 2246, 3285, 3319, 3455 |
| BstSNI | TACGTA | 1 cut(s) | 1790 |
| BstUI | CGCG | 1 cut(s) | 211 |
| BstV2I | GAAGAC | 3 cut(s) | 849, 2558, 2852 |
| BstX2I | RGATCY | 4 cut(s) | 4, 1261, 3530, 3634 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2599, 3263 |
| BstYI | RGATCY | 4 cut(s) | 4, 1261, 3530, 3634 |
| BtgI | CCRYGG | 4 cut(s) | 2284, 2592, 2987, 3391 |
| BtrI | CACGTC | 2 cut(s) | 2277, 3498 |
| BtsCI | GGATG | 7 cut(s) | 420, 508, 625, 811, 1030, 2228, 2372 |
| BtsI | GCAGTG | 3 cut(s) | 1634, 2232, 2571 |
| BtsIMutI | CAGTG | 6 cut(s) | 1599, 1634, 2232, 2571, 3657, 3668 |
| BveI | ACCTGC | 2 cut(s) | 1952, 2239 |
| Cac8I | GCNNGC | 5 cut(s) | 907, 1056, 1890, 2994, 3280 |
| CaiI | CAGNNNCTG | 6 cut(s) | 602, 632, 1606, 2192, 2636, 3470 |
| CciI | TCATGA | 4 cut(s) | 394, 1372, 2703, 3379 |
| CfoI | GCGC | 4 cut(s) | 418, 930, 3150, 3284 |
| Cfr10I | RCCGGY | 2 cut(s) | 794, 3236 |
| Cfr13I | GGNCC | 6 cut(s) | 792, 1632, 1976, 2189, 2977, 3417 |
| CseI | GACGC | 2 cut(s) | 2478, 3242 |
| Csp6I | GTAC | 3 cut(s) | 495, 1951, 2006 |
| CspAI | ACCGGT | 1 cut(s) | 794 |
| CspCI | CAANNNNNGTGG | 8 cut(s) | 1422, 1457, 1726, 1761, 2221, 2256, 3409, 3444 |
| CviQI | GTAC | 3 cut(s) | 495, 1951, 2006 |
| DraI | TTTAAA | 1 cut(s) | 1405 |
| DraIII | CACNNNGTG | 1 cut(s) | 1088 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 1429, 3117, 3218 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 1429, 3117, 3218 |
| EaeI | YGGCCR | 1 cut(s) | 903 |
| Eam1104I | CTCTTC | 2 cut(s) | 170, 681 |
| EarI | CTCTTC | 2 cut(s) | 170, 681 |
| EciI | GGCGGA | 1 cut(s) | 3615 |
| Ecl136II | GAGCTC | 2 cut(s) | 405, 2071 |
| Eco105I | TACGTA | 1 cut(s) | 1790 |
| Eco130I | CCWWGG | 4 cut(s) | 2284, 2592, 2987, 3441 |
| Eco147I | AGGCCT | 1 cut(s) | 1771 |
| Eco24I | GRGCYC | 5 cut(s) | 221, 407, 1674, 2073, 3337 |
| Eco31I | GGTCTC | 2 cut(s) | 2699, 3431 |
| Eco47I | GGWCC | 1 cut(s) | 792 |
| Eco53kI | GAGCTC | 2 cut(s) | 405, 2071 |
| Eco57I | CTGAAG | 7 cut(s) | 737, 861, 1299, 1434, 1584, 2427, 3681 |
| EcoICRI | GAGCTC | 2 cut(s) | 405, 2071 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2189 |
| EcoRI | GAATTC | 1 cut(s) | 1577 |
| EcoT14I | CCWWGG | 4 cut(s) | 2284, 2592, 2987, 3441 |
| EcoT38I | GRGCYC | 5 cut(s) | 221, 407, 1674, 2073, 3337 |
| ErhI | CCWWGG | 4 cut(s) | 2284, 2592, 2987, 3441 |
| Esp3I | CGTCTC | 1 cut(s) | 3225 |
| FaqI | GGGAC | 4 cut(s) | 805, 1185, 1585, 3416 |
| FauI | CCCGC | 1 cut(s) | 2256 |
| FbaI | TGATCA | 1 cut(s) | 1369 |
| FblI | GTMKAC | 1 cut(s) | 3454 |
| FokI | GGATG | 7 cut(s) | 407, 515, 632, 818, 1037, 2215, 2359 |
| FriOI | GRGCYC | 5 cut(s) | 221, 407, 1674, 2073, 3337 |
| FspBI | CTAG | 9 cut(s) | 63, 222, 1740, 1775, 1889, 2135, 2219, 2993, 3570 |
| GlaI | GCGC | 4 cut(s) | 417, 929, 3149, 3283 |
| GsaI | CCCAGC | 1 cut(s) | 3417 |
| GsuI | CTGGAG | 3 cut(s) | 268, 1950, 3021 |
| HaeII | RGCGCY | 2 cut(s) | 931, 3151 |
| HapII | CCGG | 4 cut(s) | 795, 3218, 3237, 3535 |
| HgaI | GACGC | 2 cut(s) | 2478, 3242 |
| HhaI | GCGC | 4 cut(s) | 418, 930, 3150, 3284 |
| Hin1I | GRCGYC | 1 cut(s) | 3234 |
| Hin6I | GCGC | 4 cut(s) | 416, 928, 3148, 3282 |
| HinP1I | GCGC | 4 cut(s) | 416, 928, 3148, 3282 |
| HincII | GTYRAC | 1 cut(s) | 3388 |
| HindII | GTYRAC | 1 cut(s) | 3388 |
| HindIII | AAGCTT | 1 cut(s) | 1857 |
| HpaII | CCGG | 4 cut(s) | 795, 3218, 3237, 3535 |
| HphI | GGTGA | 8 cut(s) | 184, 473, 1289, 1666, 1855, 2279, 2355, 2915 |
| Hpy166II | GTNNAC | 6 cut(s) | 967, 1793, 2468, 3050, 3388, 3455 |
| Hpy8I | GTNNAC | 6 cut(s) | 967, 1793, 2468, 3050, 3388, 3455 |
| HpyCH4IV | ACGT | 7 cut(s) | 553, 1789, 2276, 3202, 3296, 3357, 3497 |
| HpySE526I | ACGT | 7 cut(s) | 553, 1789, 2276, 3202, 3296, 3357, 3497 |
| Hsp92I | GRCGYC | 1 cut(s) | 3234 |
| HspAI | GCGC | 4 cut(s) | 416, 928, 3148, 3282 |
| Ksp22I | TGATCA | 1 cut(s) | 1369 |
| LmnI | GCTCC | 4 cut(s) | 761, 2603, 2674, 3258 |
| LweI | GCATC | 6 cut(s) | 796, 1087, 1180, 1556, 3026, 3547 |
| MaeI | CTAG | 9 cut(s) | 63, 222, 1740, 1775, 1889, 2135, 2219, 2993, 3570 |
| MaeII | ACGT | 7 cut(s) | 553, 1789, 2276, 3202, 3296, 3357, 3497 |
| MaeIII | GTNAC | 6 cut(s) | 321, 335, 1027, 2137, 2277, 3190 |
| MbiI | CCGCTC | 1 cut(s) | 2263 |
| MfeI | CAATTG | 2 cut(s) | 2022, 2199 |
| MflI | RGATCY | 4 cut(s) | 4, 1261, 3530, 3634 |
| MhlI | GDGCHC | 9 cut(s) | 221, 407, 1674, 2073, 2276, 3255, 3271, 3337, 3379 |
| MlsI | TGGCCA | 1 cut(s) | 905 |
| MluNI | TGGCCA | 1 cut(s) | 905 |
| MlyI | GAGTC | 5 cut(s) | 335, 721, 923, 2666, 3460 |
| MmeI | TCCRAC | 6 cut(s) | 350, 1590, 2640, 2692, 2944, 3178 |
| Mox20I | TGGCCA | 1 cut(s) | 905 |
| MroXI | GAANNNNTTC | 2 cut(s) | 708, 879 |
| MscI | TGGCCA | 1 cut(s) | 905 |
| MslI | CAYNNNNRTG | 3 cut(s) | 429, 2007, 2289 |
| Msp20I | TGGCCA | 1 cut(s) | 905 |
| MspA1I | CMGCKG | 5 cut(s) | 909, 1000, 2144, 3425, 3467 |
| MspI | CCGG | 4 cut(s) | 795, 3218, 3237, 3535 |
| MunI | CAATTG | 2 cut(s) | 2022, 2199 |
| Mva1269I | GAATGC | 3 cut(s) | 532, 893, 1009 |
| MvnI | CGCG | 1 cut(s) | 211 |
| NciI | CCSGG | 1 cut(s) | 3535 |
| NcoI | CCATGG | 3 cut(s) | 2284, 2592, 2987 |
| NheI | GCTAGC | 2 cut(s) | 1888, 2992 |
| NlaIV | GGNNCC | 4 cut(s) | 793, 3418, 3447, 3636 |
| NmuCI | GTSAC | 4 cut(s) | 321, 2137, 2277, 3190 |
| NspI | RCATGY | 3 cut(s) | 495, 1876, 3282 |
| NspV | TTCGAA | 2 cut(s) | 2744, 3043 |
| PaeI | GCATGC | 1 cut(s) | 3282 |
| PagI | TCATGA | 4 cut(s) | 394, 1372, 2703, 3379 |
| PceI | AGGCCT | 1 cut(s) | 1771 |
| PciI | ACATGT | 1 cut(s) | 1872 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2287 |
| PctI | GAATGC | 3 cut(s) | 532, 893, 1009 |
| PdmI | GAANNNNTTC | 2 cut(s) | 708, 879 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2323, 2678 |
| PfoI | TCCNGGA | 2 cut(s) | 1927, 2316 |
| PinAI | ACCGGT | 1 cut(s) | 794 |
| PleI | GAGTC | 5 cut(s) | 335, 721, 922, 2665, 3459 |
| PpsI | GAGTC | 5 cut(s) | 335, 721, 922, 2665, 3459 |
| Ppu21I | YACGTR | 1 cut(s) | 1790 |
| PscI | ACATGT | 1 cut(s) | 1872 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3393 |
| PsiI | TTATAA | 1 cut(s) | 2759 |
| Psp124BI | GAGCTC | 2 cut(s) | 407, 2073 |
| Psp1406I | AACGTT | 1 cut(s) | 3296 |
| PspFI | CCCAGC | 1 cut(s) | 3413 |
| PspN4I | GGNNCC | 4 cut(s) | 793, 3418, 3447, 3636 |
| PspPI | GGNCC | 6 cut(s) | 792, 1632, 1976, 2189, 2977, 3417 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1474, 1506, 3438, 3470 |
| PstI | CTGCAG | 5 cut(s) | 525, 618, 2239, 2250, 3289 |
| PstNI | CAGNNNCTG | 6 cut(s) | 602, 632, 1606, 2192, 2636, 3470 |
| PsuI | RGATCY | 4 cut(s) | 4, 1261, 3530, 3634 |
| PvuII | CAGCTG | 4 cut(s) | 909, 1000, 2144, 3467 |
| RsaI | GTAC | 3 cut(s) | 496, 1952, 2007 |
| RsaNI | GTAC | 3 cut(s) | 495, 1951, 2006 |
| RseI | CAYNNNNRTG | 3 cut(s) | 429, 2007, 2289 |
| SacI | GAGCTC | 2 cut(s) | 407, 2073 |
| Sau96I | GGNCC | 6 cut(s) | 792, 1632, 1976, 2189, 2977, 3417 |
| SbfI | CCTGCAGG | 1 cut(s) | 618 |
| SchI | GAGTC | 5 cut(s) | 335, 721, 923, 2666, 3460 |
| SdaI | CCTGCAGG | 1 cut(s) | 618 |
| SduI | GDGCHC | 9 cut(s) | 221, 407, 1674, 2073, 2276, 3255, 3271, 3337, 3379 |
| SfaNI | GCATC | 6 cut(s) | 796, 1087, 1180, 1556, 3026, 3547 |
| SfcI | CTRYAG | 7 cut(s) | 521, 614, 2235, 2246, 3285, 3319, 3455 |
| SfuI | TTCGAA | 2 cut(s) | 2744, 3043 |
| SinI | GGWCC | 1 cut(s) | 792 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 429, 2007, 2289 |
| SmlI | CTYRAG | 2 cut(s) | 1073, 2066 |
| SmoI | CTYRAG | 2 cut(s) | 1073, 2066 |
| SnaBI | TACGTA | 1 cut(s) | 1790 |
| SpeI | ACTAGT | 2 cut(s) | 1739, 3569 |
| SphI | GCATGC | 1 cut(s) | 3282 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 618 |
| SseBI | AGGCCT | 1 cut(s) | 1771 |
| SsiI | CCGC | 4 cut(s) | 2263, 3102, 3425, 3626 |
| SspI | AATATT | 1 cut(s) | 2526 |
| SspMI | CTAG | 9 cut(s) | 63, 222, 1740, 1775, 1889, 2135, 2219, 2993, 3570 |
| SstI | GAGCTC | 2 cut(s) | 407, 2073 |
| StuI | AGGCCT | 1 cut(s) | 1771 |
| StyI | CCWWGG | 4 cut(s) | 2284, 2592, 2987, 3441 |
| TaiI | ACGT | 7 cut(s) | 556, 1792, 2279, 3205, 3299, 3360, 3500 |
| TatI | WGTACW | 2 cut(s) | 494, 2005 |
| TscAI | CASTG | 6 cut(s) | 1599, 1634, 2239, 2578, 3664, 3675 |
| TseFI | GTSAC | 4 cut(s) | 321, 2137, 2277, 3190 |
| Tsp45I | GTSAC | 4 cut(s) | 321, 2137, 2277, 3190 |
| TspGWI | ACGGA | 1 cut(s) | 3362 |
| TspRI | CASTG | 6 cut(s) | 1599, 1634, 2239, 2578, 3664, 3675 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2323, 2678 |
| VpaK11BI | GGWCC | 1 cut(s) | 792 |
| XapI | RAATTY | 7 cut(s) | 879, 898, 1577, 2030, 2368, 2639, 2882 |
| XbaI | TCTAGA | 1 cut(s) | 221 |
| XceI | RCATGY | 3 cut(s) | 495, 1876, 3282 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 538, 1925 |
| XmiI | GTMKAC | 1 cut(s) | 3454 |
| XmnI | GAANNNNTTC | 2 cut(s) | 708, 879 |
| XspI | CTAG | 9 cut(s) | 63, 222, 1740, 1775, 1889, 2135, 2219, 2993, 3570 |