Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009759

Physical Location & Seq

Genomic Coordinates Reverse (-)

51533570 .. 51533875

Gene Structure 306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG286500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCTCCTGTTTACATGGCATTTCTATGTTTCATGGGGAATGAAACAGAAGCACGGAACTACACTTACAGCCTCGAGGTTGGAGGAAATGGCCGAAAGTTCATATGGGAAGGAAACCCAAGAAGCATAAGGGATAGCCACAAGAAGGTTAGGGACAGCCATGATGGCCTCATAATACAGCGCAACATGGTGCTTTTCTTCTCTGGTGGGGATAGGAAAGAGCTGAAGCTACGAGTTACAGGGCGGATATGGAAAGAACAGCAGAACCCAGAAGGCGGTGCCTGCATCATACCACTCTGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

101

Amino Acids

11.54

Weight (kDa)

9.18

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_TRAF	PF03145	2 - 80	3.7e-26	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61790
fragaria_vesca	FvH4_7g16630
malus_domestica	MD01G1082000.v1.1 MD07G1150400.v1.1
prunus_persica	Prupe.2G189200_v2.0.a1 Prupe.2G189200_v2.0.a1
pyrus_communis	pycom01g10960 pycom07g14890
rosa_chinensis	RchiOBHm_Chr1g0359721 RchiOBHm_Chr1g0359801
rosa_laevigata	RLG00000027853
rosa_multiflora	Rmu_ssc0000371.1_g000007
rosa_roxburghii	Rroxscaffold_4G00296820
rosa_rugosa	Rorug01G0272800
rosa_samantha	Rh1AG286500 Rh1AG286600 Rh1BG252300 Rh1BG252500 Rh1CG269700 Rh1DG281500
rosa_wichuraiana	Rw1G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	278
AciI	CCGC	2 cut(s)	244, 276
AcoI	YGGCCR	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	245
AfiI	CCNNNNNNNGG	2 cut(s)	145, 275
AluBI	AGCT	2 cut(s)	223, 229
AluI	AGCT	2 cut(s)	223, 229
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	91, 166
AspLEI	GCGC	1 cut(s)	183
AvaI	CYCGRG	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	278
BccI	CCATC	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	298
BglI	GCCNNNNNGGC	1 cut(s)	165
BmeT110I	CYCGRG	1 cut(s)	74
BmiI	GGNNCC	2 cut(s)	6, 280
BmsI	GCATC	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 275
BseLI	CCNNNNNNNGG	2 cut(s)	145, 275
BshFI	GGCC	2 cut(s)	93, 168
BshNI	GGYRCC	1 cut(s)	278
BsiHKCI	CYCGRG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	145, 275
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	93, 168
BsoBI	CYCGRG	1 cut(s)	74
BspACI	CCGC	2 cut(s)	244, 276
BspANI	GGCC	2 cut(s)	93, 168
BspLI	GGNNCC	2 cut(s)	6, 280
BspT107I	GGYRCC	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	2 cut(s)	165, 282
BstSFI	CTRYAG	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	93, 168
Cac8I	GCNNGC	1 cut(s)	283
CfoI	GCGC	1 cut(s)	183
CviAII	CATG	4 cut(s)	16, 34, 161, 187
CviJI	RGCY	8 cut(s)	5, 72, 93, 138, 159, 168, 223, 229
CviKI_1	RGCY	8 cut(s)	5, 72, 93, 138, 159, 168, 223, 229
EaeI	YGGCCR	1 cut(s)	91
EciI	GGCGGA	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	74
FaeI	CATG	4 cut(s)	19, 37, 164, 190
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	4 cut(s)	15, 33, 160, 186
FauNDI	CATATG	1 cut(s)	104
GlaI	GCGC	1 cut(s)	182
HaeIII	GGCC	2 cut(s)	93, 168
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	4 cut(s)	19, 37, 164, 190
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	13
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	3 cut(s)	104, 139, 266
HpyCH4V	TGCA	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	2 cut(s)	165, 282
Hsp92II	CATG	4 cut(s)	19, 37, 164, 190
HspAI	GCGC	1 cut(s)	181
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	5 cut(s)	21, 189, 225, 282, 295
LweI	GCATC	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	235
MboII	GAAGA	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	4 cut(s)	70, 77, 83, 179
MslI	CAYNNNNRTG	1 cut(s)	25
MwoI	GCNNNNNNNGC	2 cut(s)	165, 282
NdeI	CATATG	1 cut(s)	104
NlaIII	CATG	4 cut(s)	19, 37, 164, 190
NlaIV	GGNNCC	2 cut(s)	6, 280
PaeR7I	CTCGAG	1 cut(s)	74
PspN4I	GGNNCC	2 cut(s)	6, 280
PspXI	VCTCGAGB	1 cut(s)	74
PsrI	GAACNNNNNNTAC	2 cut(s)	50, 82
RseI	CAYNNNNRTG	1 cut(s)	25
SetI	ASST	4 cut(s)	81, 150, 225, 231
SfaNI	GCATC	1 cut(s)	294
SfcI	CTRYAG	1 cut(s)	298
Sfr274I	CTCGAG	1 cut(s)	74
SlaI	CTCGAG	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SsiI	CCGC	2 cut(s)	244, 276
TaqI	TCGA	1 cut(s)	75
TspDTI	ATGAA	3 cut(s)	22, 57, 91
TspGWI	ACGGA	1 cut(s)	70
XhoI	CTCGAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.