Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009759

Physical Location & Seq

Genomic Coordinates Reverse (-)

21874143 .. 21877048

Gene Structure 2906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1150400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAATCAGACATCATTGAAAGTTTTGCGTCTTTGGATTTGATTGACGATGACGAGATCCATAGCCGTCCGATTCACCAGTTTGTTTCAGTTCCGAAGGCGCACAGCAACACCGGCAGTAACATTCCCGGCACCACCAGCGTCCACGAGCTTCTTGAATGCCCTGTTTGTACCAATTCAATGTACCCTCCAATCCATCAGTGTCACAATGGGCATACCCTTTGTTCCACCTGTAAAGCAAGGGTGCATAACCGGTGCCCAACTTGTAGACAGGAGCTTGGTGACATAAGGTGTCTAGCACTGGAGAAGGTTGCTGAATCGCTTGAACTGCCCTGCAAGTATTGCTCTCTAGGGTGCCCAGAGATATTTCCCTATTATAGTAAACTCAAACACGAGGCTGTCTGTAACTTCAGACCATACAACTGTCCATATGCTGGATCAGACTGCTCCACTGTTGGGGATATTCCATTCCTTGTTTCTCACCTCCGGGATGATCACAAGGTGGACATGCATTCCGGATGCACTTTTAATCATCGTTATGTAAAGTCTAATCCTCGTGAAGTAGAAAATGCCACATGGATGTTAACTGTCTTCCACTGTTTTGGTCAGTATTTCTGTCTACATTTTGAAGCCTTCCAGCTTGGTATGGCTCCTGTTTACATGGCATTTCTCCGGTTCATGGGGGATGAAGCAGAAGCTCGGAACTACAGCTACAGCCTGGAGGTTGGAGGAAATGGCCGAAAGCTGATTTGGGAGGGCAACCCAAGAAGCATAAGGGATAGCCACAAGAAGGTTAGAGACAGCCATGATGGCCTCATAATACAGCGCAACATGGCGCTTTTCTTCTCTGGTGGGGATAGGAAAGAGCTGAAGCTGCGGGTCACAGGACGAATATTGAAGGAACAGCAGAACCCAGAAGGTGGGACCTGCATACCTCTCTGTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

316

Amino Acids

35.66

Weight (kDa)

6.49

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	54 - 89	2.7e-13	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	103 - 178	1.6e-29	Sina, zinc finger
Sina_TRAF	PF03145	198 - 295	7.8e-35	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61790
fragaria_vesca	FvH4_7g16630
malus_domestica	MD01G1082000.v1.1 MD07G1150400.v1.1
prunus_persica	Prupe.2G189200_v2.0.a1 Prupe.2G189200_v2.0.a1
pyrus_communis	pycom01g10960 pycom07g14890
rosa_chinensis	RchiOBHm_Chr1g0359721 RchiOBHm_Chr1g0359801
rosa_laevigata	RLG00000027853
rosa_multiflora	Rmu_ssc0000371.1_g000007
rosa_roxburghii	Rroxscaffold_4G00296820
rosa_rugosa	Rorug01G0272800
rosa_samantha	Rh1AG286500 Rh1AG286600 Rh1BG252300 Rh1BG252500 Rh1CG269700 Rh1DG281500
rosa_wichuraiana	Rw1G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	935
AccB1I	GGYRCC	3 cut(s)	131, 255, 354
AccB7I	CCANNNNNTGG	2 cut(s)	434, 920
AccI	GTMKAC	2 cut(s)	268, 619
AccIII	TCCGGA	1 cut(s)	515
AciI	CCGC	1 cut(s)	877
AclWI	GGATC	2 cut(s)	52, 445
AcoI	YGGCCR	1 cut(s)	736
AcuI	CTGAAG	2 cut(s)	394, 890
AdeI	CACNNNGTG	1 cut(s)	502
AfaI	GTAC	2 cut(s)	172, 185
AfiI	CCNNNNNNNGG	5 cut(s)	434, 456, 679, 790, 920
AgeI	ACCGGT	1 cut(s)	252
AgsI	TTSAA	6 cut(s)	20, 158, 180, 326, 629, 898
AjnI	CCWGG	1 cut(s)	717
AjuI	GAANNNNNNNTTGG	2 cut(s)	733, 765
AluBI	AGCT	9 cut(s)	151, 277, 640, 698, 711, 745, 868, 874, 945
AluI	AGCT	9 cut(s)	151, 277, 640, 698, 711, 745, 868, 874, 945
Alw26I	GTCTC	1 cut(s)	792
AlwI	GGATC	2 cut(s)	52, 445
Aor13HI	TCCGGA	1 cut(s)	515
AoxI	GGCC	2 cut(s)	736, 811
ApeKI	GCWGC	1 cut(s)	874
AsiGI	ACCGGT	1 cut(s)	252
AspLEI	GCGC	3 cut(s)	103, 828, 838
AspS9I	GGNCC	1 cut(s)	924
AsuC2I	CCSGG	2 cut(s)	129, 488
AsuHPI	GGTGA	3 cut(s)	68, 293, 473
AvaII	GGWCC	1 cut(s)	924
BaeGI	GKGCMC	2 cut(s)	260, 359
BanI	GGYRCC	3 cut(s)	131, 255, 354
BauI	CACGAG	3 cut(s)	146, 392, 555
BbsI	GAAGAC	1 cut(s)	583
BbvI	GCAGC	1 cut(s)	861
BccI	CCATC	2 cut(s)	204, 803
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	719
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	2 cut(s)	129, 488
BcoDI	GTCTC	1 cut(s)	792
BfaI	CTAG	3 cut(s)	296, 350, 946
BfmI	CTRYAG	3 cut(s)	706, 712, 940
BfoI	RGCGCY	1 cut(s)	839
BfuAI	ACCTGC	1 cut(s)	935
BglI	GCCNNNNNGGC	1 cut(s)	810
BisI	GCNGC	1 cut(s)	875
BlsI	GCNGC	1 cut(s)	876
Bme1390I	CCNGG	3 cut(s)	129, 488, 719
Bme18I	GGWCC	1 cut(s)	924
BmgT120I	GGNCC	1 cut(s)	924
BmiI	GGNNCC	5 cut(s)	133, 257, 356, 651, 925
BmrFI	CCNGG	3 cut(s)	129, 488, 719
BmsI	GCATC	1 cut(s)	509
BpiI	GAAGAC	1 cut(s)	583
BpmI	CTGGAG	2 cut(s)	323, 740
BpuMI	CCSGG	2 cut(s)	129, 488
BsaWI	WCCGGW	3 cut(s)	252, 515, 672
Bsc4I	CCNNNNNNNGG	5 cut(s)	434, 456, 679, 790, 920
Bse118I	RCCGGY	2 cut(s)	113, 252
Bse1I	ACTGG	2 cut(s)	79, 306
BseAI	TCCGGA	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	719
BseGI	GGATG	4 cut(s)	496, 524, 585, 691
BseLI	CCNNNNNNNGG	5 cut(s)	434, 456, 679, 790, 920
BseNI	ACTGG	2 cut(s)	79, 306
BseSI	GKGCMC	2 cut(s)	260, 359
BseXI	GCAGC	1 cut(s)	861
BshFI	GGCC	2 cut(s)	738, 813
BshNI	GGYRCC	3 cut(s)	131, 255, 354
BshTI	ACCGGT	1 cut(s)	252
BsiSI	CCGG	6 cut(s)	114, 129, 253, 487, 516, 673
BslFI	GGGAC	1 cut(s)	937
BslI	CCNNNNNNNGG	5 cut(s)	434, 456, 679, 790, 920
BsmAI	GTCTC	1 cut(s)	792
BsmFI	GGGAC	1 cut(s)	937
BsmI	GAATGC	2 cut(s)	164, 511
BsnI	GGCC	2 cut(s)	738, 813
Bsp1286I	GDGCHC	2 cut(s)	260, 359
Bsp13I	TCCGGA	1 cut(s)	515
Bsp143I	GATC	3 cut(s)	57, 437, 493
BspACI	CCGC	1 cut(s)	877
BspANI	GGCC	2 cut(s)	738, 813
BspEI	TCCGGA	1 cut(s)	515
BspLI	GGNNCC	5 cut(s)	133, 257, 356, 651, 925
BspMI	ACCTGC	1 cut(s)	935
BspPI	GGATC	2 cut(s)	52, 445
BspT107I	GGYRCC	3 cut(s)	131, 255, 354
BsrFI	RCCGGY	2 cut(s)	113, 252
BsrI	ACTGG	2 cut(s)	79, 306
BssAI	RCCGGY	2 cut(s)	113, 252
BssMI	GATC	3 cut(s)	57, 437, 493
BssSI	CACGAG	3 cut(s)	146, 392, 555
Bst2BI	CACGAG	3 cut(s)	146, 392, 555
Bst2UI	CCWGG	1 cut(s)	719
Bst4CI	ACNGT	4 cut(s)	425, 454, 589, 599
BstAPI	GCANNNNNTGC	1 cut(s)	342
BstF5I	GGATG	4 cut(s)	496, 524, 585, 691
BstH2I	RGCGCY	1 cut(s)	839
BstHHI	GCGC	3 cut(s)	103, 828, 838
BstKTI	GATC	3 cut(s)	60, 440, 496
BstMAI	GTCTC	1 cut(s)	792
BstMBI	GATC	3 cut(s)	57, 437, 493
BstMWI	GCNNNNNNNGC	6 cut(s)	114, 138, 328, 342, 810, 874
BstNI	CCWGG	1 cut(s)	719
BstNSI	RCATGY	1 cut(s)	511
BstSCI	CCNGG	3 cut(s)	127, 486, 717
BstSFI	CTRYAG	3 cut(s)	706, 712, 940
BstSLI	GKGCMC	2 cut(s)	260, 359
BstV1I	GCAGC	1 cut(s)	861
BstV2I	GAAGAC	1 cut(s)	583
BstX2I	RGATCY	1 cut(s)	57
BstXI	CCANNNNNNTGG	1 cut(s)	602
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	738, 813
BtsCI	GGATG	4 cut(s)	496, 524, 585, 691
BtsIMutI	CAGTG	4 cut(s)	206, 299, 450, 595
BveI	ACCTGC	1 cut(s)	935
CfoI	GCGC	3 cut(s)	103, 828, 838
Cfr10I	RCCGGY	2 cut(s)	113, 252
Cfr13I	GGNCC	1 cut(s)	924
CseI	GACGC	2 cut(s)	18, 130
Csp6I	GTAC	2 cut(s)	171, 184
CspAI	ACCGGT	1 cut(s)	252
CviAII	CATG	6 cut(s)	508, 576, 661, 679, 806, 832
CviQI	GTAC	2 cut(s)	171, 184
DpnI	GATC	3 cut(s)	59, 439, 495
DpnII	GATC	3 cut(s)	57, 437, 493
DraIII	CACNNNGTG	1 cut(s)	502
EaeI	YGGCCR	1 cut(s)	736
Eco47I	GGWCC	1 cut(s)	924
Eco57I	CTGAAG	2 cut(s)	394, 890
EcoO109I	RGGNCCY	1 cut(s)	924
EcoRII	CCWGG	1 cut(s)	717
EcoT22I	ATGCAT	1 cut(s)	513
FaeI	CATG	6 cut(s)	511, 579, 664, 682, 809, 835
FaqI	GGGAC	1 cut(s)	937
FatI	CATG	6 cut(s)	507, 575, 660, 678, 805, 831
FauI	CCCGC	1 cut(s)	870
FauNDI	CATATG	1 cut(s)	430
FbaI	TGATCA	1 cut(s)	493
FblI	GTMKAC	2 cut(s)	268, 619
Fnu4HI	GCNGC	1 cut(s)	875
FokI	GGATG	4 cut(s)	503, 531, 592, 698
Fsp4HI	GCNGC	1 cut(s)	875
FspBI	CTAG	3 cut(s)	296, 350, 946
GlaI	GCGC	3 cut(s)	102, 827, 837
GluI	GCNGC	1 cut(s)	875
GsuI	CTGGAG	2 cut(s)	323, 740
HaeII	RGCGCY	1 cut(s)	839
HaeIII	GGCC	2 cut(s)	738, 813
HapII	CCGG	6 cut(s)	114, 129, 253, 487, 516, 673
HgaI	GACGC	2 cut(s)	18, 130
HhaI	GCGC	3 cut(s)	103, 828, 838
Hin1II	CATG	6 cut(s)	511, 579, 664, 682, 809, 835
Hin6I	GCGC	3 cut(s)	101, 826, 836
HinP1I	GCGC	3 cut(s)	101, 826, 836
HincII	GTYRAC	1 cut(s)	585
HindII	GTYRAC	1 cut(s)	585
HinfI	GANTC	3 cut(s)	5, 73, 317
HpaI	GTTAAC	1 cut(s)	585
HpaII	CCGG	6 cut(s)	114, 129, 253, 487, 516, 673
HphI	GGTGA	3 cut(s)	68, 293, 473
Hpy166II	GTNNAC	7 cut(s)	145, 269, 383, 505, 585, 620, 658
Hpy188I	TCNGA	6 cut(s)	10, 72, 96, 413, 442, 702
Hpy188III	TCNNGA	3 cut(s)	155, 516, 557
Hpy8I	GTNNAC	7 cut(s)	145, 269, 383, 505, 585, 620, 658
HpyAV	CCTTC	6 cut(s)	91, 301, 643, 784, 892, 911
HpyCH4III	ACNGT	4 cut(s)	425, 454, 589, 599
HpyCH4V	TGCA	5 cut(s)	247, 336, 511, 522, 930
HpyF10VI	GCNNNNNNNGC	6 cut(s)	114, 138, 328, 342, 810, 874
Hsp92II	CATG	6 cut(s)	511, 579, 664, 682, 809, 835
HspAI	GCGC	3 cut(s)	101, 826, 836
Kpn2I	TCCGGA	1 cut(s)	515
Ksp22I	TGATCA	1 cut(s)	493
KspAI	GTTAAC	1 cut(s)	585
Kzo9I	GATC	3 cut(s)	57, 437, 493
LmnI	GCTCC	3 cut(s)	274, 452, 655
Lsp1109I	GCAGC	1 cut(s)	861
LweI	GCATC	1 cut(s)	509
MaeI	CTAG	3 cut(s)	296, 350, 946
MaeIII	GTNAC	5 cut(s)	119, 203, 281, 404, 880
MalI	GATC	3 cut(s)	59, 439, 495
MboI	GATC	3 cut(s)	57, 437, 493
MboII	GAAGA	2 cut(s)	583, 835
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	260, 359
MluCI	AATT	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	706
MnlI	CCTC	9 cut(s)	198, 388, 494, 564, 715, 722, 748, 824, 945
Mph1103I	ATGCAT	1 cut(s)	513
MroI	TCCGGA	1 cut(s)	515
MseI	TTAA	2 cut(s)	528, 584
MslI	CAYNNNNRTG	2 cut(s)	537, 578
MspI	CCGG	6 cut(s)	114, 129, 253, 487, 516, 673
MspR9I	CCNGG	3 cut(s)	129, 488, 719
Mva1269I	GAATGC	2 cut(s)	164, 511
MvaI	CCWGG	1 cut(s)	719
MwoI	GCNNNNNNNGC	6 cut(s)	114, 138, 328, 342, 810, 874
NciI	CCSGG	2 cut(s)	129, 488
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	3 cut(s)	57, 437, 493
NlaIII	CATG	6 cut(s)	511, 579, 664, 682, 809, 835
NlaIV	GGNNCC	5 cut(s)	133, 257, 356, 651, 925
NmuCI	GTSAC	3 cut(s)	203, 281, 880
NsiI	ATGCAT	1 cut(s)	513
NspI	RCATGY	1 cut(s)	511
PctI	GAATGC	2 cut(s)	164, 511
PfeI	GAWTC	3 cut(s)	5, 73, 317
PflMI	CCANNNNNTGG	2 cut(s)	434, 920
PfoI	TCCNGGA	1 cut(s)	486
PinAI	ACCGGT	1 cut(s)	252
PkrI	GCNGC	1 cut(s)	876
PpuMI	RGGWCCY	1 cut(s)	924
Psp5II	RGGWCCY	1 cut(s)	924
Psp6I	CCWGG	1 cut(s)	717
PspGI	CCWGG	1 cut(s)	717
PspN4I	GGNNCC	5 cut(s)	133, 257, 356, 651, 925
PspPI	GGNCC	1 cut(s)	924
PspPPI	RGGWCCY	1 cut(s)	924
PsrI	GAACNNNNNNTAC	2 cut(s)	695, 727
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	2 cut(s)	172, 185
RsaNI	GTAC	2 cut(s)	171, 184
RseI	CAYNNNNRTG	2 cut(s)	537, 578
SaqAI	TTAA	2 cut(s)	528, 584
SatI	GCNGC	1 cut(s)	875
Sau3AI	GATC	3 cut(s)	57, 437, 493
Sau96I	GGNCC	1 cut(s)	924
ScrFI	CCNGG	3 cut(s)	129, 488, 719
SduI	GDGCHC	2 cut(s)	260, 359
SfaNI	GCATC	1 cut(s)	509
SfcI	CTRYAG	3 cut(s)	706, 712, 940
SinI	GGWCC	1 cut(s)	924
SmiMI	CAYNNNNRTG	2 cut(s)	537, 578
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	1 cut(s)	877
SspI	AATATT	1 cut(s)	894
SspMI	CTAG	3 cut(s)	296, 350, 946
StyD4I	CCNGG	3 cut(s)	127, 486, 717
TaaI	ACNGT	4 cut(s)	425, 454, 589, 599
TasI	AATT	1 cut(s)	175
TfiI	GAWTC	3 cut(s)	5, 73, 317
Tru1I	TTAA	2 cut(s)	528, 584
Tru9I	TTAA	2 cut(s)	528, 584
TscAI	CASTG	4 cut(s)	206, 306, 457, 602
TseFI	GTSAC	3 cut(s)	203, 281, 880
TseI	GCWGC	1 cut(s)	874
Tsp45I	GTSAC	3 cut(s)	203, 281, 880
TspDTI	ATGAA	2 cut(s)	667, 702
TspRI	CASTG	4 cut(s)	206, 306, 457, 602
Van91I	CCANNNNNTGG	2 cut(s)	434, 920
VpaK11BI	GGWCC	1 cut(s)	924
XceI	RCATGY	1 cut(s)	511
XmiI	GTMKAC	2 cut(s)	268, 619
XspI	CTAG	3 cut(s)	296, 350, 946
Zsp2I	ATGCAT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.