Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009759

Physical Location & Seq

Genomic Coordinates Forward (+)

16077305 .. 16079763

Gene Structure 2459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027853

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAAAATGGACCCAGAAAACATGGAGATTGTTCCACCGTCGGATTTGATGGACGACGACGAGATCCACGGCCGTCCTCGCCAGTTATTTGCAGTTCCAAAGCCTCACAACAATGGCACTAACATTCCGGGAACCACCAGTGTTCATGAGCTTCTTGAATGCCCTGTTTGCACAAATTCAATGTACCCTCCAATCCATCAGTGCCATAACGGGCATACCCTTTGTTCCACCTGTAAAACAAGAGTGCATAATCGGTGCCCAACTTGTAGACAGGAGCTTGGTGACATAAGGTGTTTAGCACTGGAGAAGGTAGCTGAATCACTTGAACTGCCTTGCAAGTACTGCTCTCTTGGGTGCCCGGAGATATTCCCATATTATGGTAAACTGAAACATGAGGCTGTCTGTAACTTCAGACCATATAACTGTCCTTATGCTGGATCAGACTGCTCTGTTGTTGGGGATATTCCATTCCTTGTTGCTCATCTACGGGATGACCACAAGGTGGACATGCATTCTGGATGTACTTTTAACCATCGTTACGTTAAGTCTAATCCCCGCGAAGTAGAAAATGCCACATGGATGTTAACTGTTTTCCACTGCTTTGGTCAGTACTTCTGTCTCCATTTTGAAGCATTCCAGCTCGGTATGGCTCCTGTTTACATGGCATTTCTACGTTTCATGGGGGATGAAACAGAAGCTCGGAACTACACCTACAGCCTTGAGGTTGGAGGAAATGGCCGAAAGATCATATGGGAAGGAAATCCAAGAAGCATAAGGGATAGCCACAAGAAGGTTAGGGACAGCCATGATGGCCTCATAATACAGCGCAACATGGCGCTTTTCTTCTCTGGTGGGGATAGGAAAGAGCTGAAGCTGCGAGTTACAGGTCGGATATGGAAGGAACAGCAGAACCCAGAAGGTGGTGCCTGCATCATACCTCTCTGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

317

Amino Acids

35.97

Weight (kDa)

6.75

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	54 - 89	4.1e-13	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	103 - 178	2.1e-29	Sina, zinc finger
Sina_TRAF	PF03145	198 - 295	1.9e-34	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61790
fragaria_vesca	FvH4_7g16630
malus_domestica	MD01G1082000.v1.1 MD07G1150400.v1.1
prunus_persica	Prupe.2G189200_v2.0.a1 Prupe.2G189200_v2.0.a1
pyrus_communis	pycom01g10960 pycom07g14890
rosa_chinensis	RchiOBHm_Chr1g0359721 RchiOBHm_Chr1g0359801
rosa_laevigata	RLG00000027853
rosa_multiflora	Rmu_ssc0000371.1_g000007
rosa_roxburghii	Rroxscaffold_4G00296820
rosa_rugosa	Rorug01G0272800
rosa_samantha	Rh1AG286500 Rh1AG286600 Rh1BG252300 Rh1BG252500 Rh1CG269700 Rh1DG281500
rosa_wichuraiana	Rw1G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	255, 354, 923
AccB7I	CCANNNNNTGG	3 cut(s)	377, 502, 920
AccI	GTMKAC	1 cut(s)	268
AccII	CGCG	1 cut(s)	558
AciI	CCGC	1 cut(s)	556
AclWI	GGATC	2 cut(s)	58, 445
AcoI	YGGCCR	2 cut(s)	70, 736
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	2 cut(s)	394, 890
AdeI	CACNNNGTG	1 cut(s)	502
AfaI	GTAC	4 cut(s)	185, 341, 523, 611
AfiI	CCNNNNNNNGG	5 cut(s)	377, 434, 502, 790, 920
AgsI	TTSAA	4 cut(s)	158, 180, 326, 629
AluBI	AGCT	7 cut(s)	151, 277, 314, 640, 698, 868, 874
AluI	AGCT	7 cut(s)	151, 277, 314, 640, 698, 868, 874
Alw26I	GTCTC	1 cut(s)	623
AlwI	GGATC	2 cut(s)	58, 445
AoxI	GGCC	3 cut(s)	70, 736, 811
ApeKI	GCWGC	1 cut(s)	874
ApoI	RAATTY	1 cut(s)	175
AspLEI	GCGC	2 cut(s)	828, 838
AspS9I	GGNCC	1 cut(s)	10
AsuC2I	CCSGG	2 cut(s)	129, 359
AsuHPI	GGTGA	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	10
BaeGI	GKGCMC	2 cut(s)	260, 359
BanI	GGYRCC	3 cut(s)	255, 354, 923
BbvI	GCAGC	1 cut(s)	861
BccI	CCATC	4 cut(s)	43, 204, 540, 803
BceAI	ACGGC	2 cut(s)	57, 85
BcnI	CCSGG	2 cut(s)	129, 359
BcoDI	GTCTC	1 cut(s)	623
BfmI	CTRYAG	2 cut(s)	712, 943
BfoI	RGCGCY	1 cut(s)	839
BglI	GCCNNNNNGGC	1 cut(s)	810
BisI	GCNGC	1 cut(s)	875
BlsI	GCNGC	1 cut(s)	876
BmcAI	AGTACT	2 cut(s)	341, 611
Bme1390I	CCNGG	2 cut(s)	129, 359
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	6 cut(s)	12, 133, 257, 356, 651, 925
BmrFI	CCNGG	2 cut(s)	129, 359
BmsI	GCATC	1 cut(s)	939
BpmI	CTGGAG	1 cut(s)	323
BpuEI	CTTGAG	1 cut(s)	740
BpuMI	CCSGG	2 cut(s)	129, 359
BsaJI	CCNNGG	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	5 cut(s)	377, 434, 502, 790, 920
Bse1I	ACTGG	3 cut(s)	82, 138, 306
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	4 cut(s)	496, 524, 585, 691
BseLI	CCNNNNNNNGG	5 cut(s)	377, 434, 502, 790, 920
BseNI	ACTGG	3 cut(s)	82, 138, 306
BseSI	GKGCMC	2 cut(s)	260, 359
BseX3I	CGGCCG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	861
Bsh1236I	CGCG	1 cut(s)	558
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	3 cut(s)	72, 738, 813
BshNI	GGYRCC	3 cut(s)	255, 354, 923
BsiEI	CGRYCG	1 cut(s)	73
BsiSI	CCGG	2 cut(s)	128, 359
BslFI	GGGAC	1 cut(s)	812
BslI	CCNNNNNNNGG	5 cut(s)	377, 434, 502, 790, 920
BsmAI	GTCTC	1 cut(s)	623
BsmFI	GGGAC	1 cut(s)	812
BsmI	GAATGC	3 cut(s)	164, 511, 632
BsnI	GGCC	3 cut(s)	72, 738, 813
Bsp1286I	GDGCHC	2 cut(s)	260, 359
Bsp143I	GATC	3 cut(s)	63, 437, 744
BspACI	CCGC	1 cut(s)	556
BspANI	GGCC	3 cut(s)	72, 738, 813
BspFNI	CGCG	1 cut(s)	558
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	6 cut(s)	12, 133, 257, 356, 651, 925
BspPI	GGATC	2 cut(s)	58, 445
BspT107I	GGYRCC	3 cut(s)	255, 354, 923
BsrI	ACTGG	3 cut(s)	82, 138, 306
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	3 cut(s)	63, 437, 744
Bst4CI	ACNGT	3 cut(s)	39, 425, 589
BstAPI	GCANNNNNTGC	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	928
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	4 cut(s)	496, 524, 585, 691
BstFNI	CGCG	1 cut(s)	558
BstH2I	RGCGCY	1 cut(s)	839
BstHHI	GCGC	2 cut(s)	828, 838
BstKTI	GATC	3 cut(s)	66, 440, 747
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	3 cut(s)	63, 437, 744
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 168, 342, 810, 874
BstNSI	RCATGY	1 cut(s)	511
BstSCI	CCNGG	2 cut(s)	127, 357
BstSFI	CTRYAG	2 cut(s)	712, 943
BstSLI	GKGCMC	2 cut(s)	260, 359
BstUI	CGCG	1 cut(s)	558
BstV1I	GCAGC	1 cut(s)	861
BstX2I	RGATCY	1 cut(s)	63
BstXI	CCANNNNNNTGG	1 cut(s)	602
BstYI	RGATCY	1 cut(s)	63
BstZI	CGGCCG	1 cut(s)	70
BsuRI	GGCC	3 cut(s)	72, 738, 813
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	4 cut(s)	496, 524, 585, 691
BtsI	GCAGTG	1 cut(s)	595
BtsIMutI	CAGTG	4 cut(s)	145, 206, 299, 595
Cac8I	GCNNGC	1 cut(s)	928
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	2 cut(s)	828, 838
Cfr13I	GGNCC	1 cut(s)	10
Csp6I	GTAC	4 cut(s)	184, 340, 522, 610
CviAII	CATG	9 cut(s)	22, 146, 392, 508, 576, 661, 679, 806, 832
CviQI	GTAC	4 cut(s)	184, 340, 522, 610
DpnI	GATC	3 cut(s)	65, 439, 746
DpnII	GATC	3 cut(s)	63, 437, 744
DraIII	CACNNNGTG	1 cut(s)	502
EaeI	YGGCCR	2 cut(s)	70, 736
EagI	CGGCCG	1 cut(s)	70
EclXI	CGGCCG	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	10
Eco52I	CGGCCG	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	394, 890
EcoT22I	ATGCAT	1 cut(s)	513
FaeI	CATG	9 cut(s)	25, 149, 395, 511, 579, 664, 682, 809, 835
FaqI	GGGAC	1 cut(s)	812
FatI	CATG	9 cut(s)	21, 145, 391, 507, 575, 660, 678, 805, 831
FauI	CCCGC	1 cut(s)	563
FauNDI	CATATG	1 cut(s)	749
FblI	GTMKAC	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	875
FokI	GGATG	4 cut(s)	503, 531, 592, 698
Fsp4HI	GCNGC	1 cut(s)	875
GlaI	GCGC	2 cut(s)	827, 837
GluI	GCNGC	1 cut(s)	875
GsuI	CTGGAG	1 cut(s)	323
HaeII	RGCGCY	1 cut(s)	839
HaeIII	GGCC	3 cut(s)	72, 738, 813
HapII	CCGG	2 cut(s)	128, 359
HhaI	GCGC	2 cut(s)	828, 838
Hin1II	CATG	9 cut(s)	25, 149, 395, 511, 579, 664, 682, 809, 835
Hin6I	GCGC	2 cut(s)	826, 836
HinP1I	GCGC	2 cut(s)	826, 836
HincII	GTYRAC	1 cut(s)	585
HindII	GTYRAC	1 cut(s)	585
HinfI	GANTC	1 cut(s)	317
HpaI	GTTAAC	1 cut(s)	585
HpaII	CCGG	2 cut(s)	128, 359
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	5 cut(s)	269, 383, 505, 585, 658
Hpy188I	TCNGA	5 cut(s)	43, 413, 442, 702, 891
Hpy188III	TCNNGA	3 cut(s)	146, 155, 516
Hpy8I	GTNNAC	5 cut(s)	269, 383, 505, 585, 658
Hpy99I	CGWCG	3 cut(s)	43, 59, 62
HpyAV	CCTTC	5 cut(s)	301, 749, 784, 892, 911
HpyCH4III	ACNGT	3 cut(s)	39, 425, 589
HpyCH4IV	ACGT	2 cut(s)	540, 673
HpyCH4V	TGCA	6 cut(s)	92, 171, 247, 336, 511, 930
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 168, 342, 810, 874
HpySE526I	ACGT	2 cut(s)	540, 673
Hsp92II	CATG	9 cut(s)	25, 149, 395, 511, 579, 664, 682, 809, 835
HspAI	GCGC	2 cut(s)	826, 836
KspAI	GTTAAC	1 cut(s)	585
Kzo9I	GATC	3 cut(s)	63, 437, 744
LmnI	GCTCC	2 cut(s)	274, 655
Lsp1109I	GCAGC	1 cut(s)	861
LweI	GCATC	1 cut(s)	939
MaeII	ACGT	2 cut(s)	540, 673
MaeIII	GTNAC	4 cut(s)	281, 404, 536, 880
MalI	GATC	3 cut(s)	65, 439, 746
MboI	GATC	3 cut(s)	63, 437, 744
MboII	GAAGA	1 cut(s)	835
MflI	RGATCY	1 cut(s)	63
MhlI	GDGCHC	2 cut(s)	260, 359
MluCI	AATT	1 cut(s)	175
MmeI	TCCRAC	3 cut(s)	21, 706, 869
MnlI	CCTC	8 cut(s)	87, 114, 198, 388, 715, 722, 824, 948
Mph1103I	ATGCAT	1 cut(s)	513
MseI	TTAA	3 cut(s)	528, 543, 584
MslI	CAYNNNNRTG	2 cut(s)	111, 578
MspI	CCGG	2 cut(s)	128, 359
MspR9I	CCNGG	2 cut(s)	129, 359
Mva1269I	GAATGC	3 cut(s)	164, 511, 632
MvnI	CGCG	1 cut(s)	558
MwoI	GCNNNNNNNGC	5 cut(s)	78, 168, 342, 810, 874
NciI	CCSGG	2 cut(s)	129, 359
NdeI	CATATG	1 cut(s)	749
NdeII	GATC	3 cut(s)	63, 437, 744
NlaIII	CATG	9 cut(s)	25, 149, 395, 511, 579, 664, 682, 809, 835
NlaIV	GGNNCC	6 cut(s)	12, 133, 257, 356, 651, 925
NmuCI	GTSAC	1 cut(s)	281
NsiI	ATGCAT	1 cut(s)	513
NspI	RCATGY	1 cut(s)	511
PagI	TCATGA	1 cut(s)	145
PctI	GAATGC	3 cut(s)	164, 511, 632
PfeI	GAWTC	1 cut(s)	317
PflMI	CCANNNNNTGG	3 cut(s)	377, 502, 920
PfoI	TCCNGGA	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	876
PspN4I	GGNNCC	6 cut(s)	12, 133, 257, 356, 651, 925
PspPI	GGNCC	1 cut(s)	10
PsrI	GAACNNNNNNTAC	2 cut(s)	695, 727
PsuI	RGATCY	1 cut(s)	63
RsaI	GTAC	4 cut(s)	185, 341, 523, 611
RsaNI	GTAC	4 cut(s)	184, 340, 522, 610
RseI	CAYNNNNRTG	2 cut(s)	111, 578
SaqAI	TTAA	3 cut(s)	528, 543, 584
SatI	GCNGC	1 cut(s)	875
Sau3AI	GATC	3 cut(s)	63, 437, 744
Sau96I	GGNCC	1 cut(s)	10
ScaI	AGTACT	2 cut(s)	341, 611
ScrFI	CCNGG	2 cut(s)	129, 359
SduI	GDGCHC	2 cut(s)	260, 359
SfaNI	GCATC	1 cut(s)	939
SfcI	CTRYAG	2 cut(s)	712, 943
SinI	GGWCC	1 cut(s)	10
SmiMI	CAYNNNNRTG	2 cut(s)	111, 578
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	1 cut(s)	556
StyD4I	CCNGG	2 cut(s)	127, 357
TaaI	ACNGT	3 cut(s)	39, 425, 589
TaiI	ACGT	2 cut(s)	543, 676
TasI	AATT	1 cut(s)	175
TatI	WGTACW	3 cut(s)	339, 521, 609
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	3 cut(s)	528, 543, 584
Tru9I	TTAA	3 cut(s)	528, 543, 584
TscAI	CASTG	4 cut(s)	145, 206, 306, 602
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	1 cut(s)	874
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	4 cut(s)	17, 134, 667, 702
TspRI	CASTG	4 cut(s)	145, 206, 306, 602
Van91I	CCANNNNNTGG	3 cut(s)	377, 502, 920
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	268
ZrmI	AGTACT	2 cut(s)	341, 611
Zsp2I	ATGCAT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.