Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009759

Physical Location & Seq

Genomic Coordinates Reverse (-)

18851198 .. 18855278

Gene Structure 4081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1082000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGAATCAGACATCATTGAAAGTCTTGCGTCTTTGGATTTGATTGACGATGATGAGATCCATGGCCGTCCGATTCATCAATTTGTTTCAGTTCCGAAGGCGCACAGCAACACCGGCAATAACATTCCCGGCACCACCAGCGTCCACGAGCTTCTTGAATGCCCTGTTTGCACCAATTCAATGTACCCTCCAATCCATCAGTGTCACAATGGGCATACCCTTTGTTCCACCTGTAAAGCAAGGGTGCATAATCGGTGCCCAACGTGTAGACAGGAGCTTGGTGACATAAGGTGTCTAGCACTGGAGAAGGTTGCTGAATCGCTTGAACTGCCCTGCAAGTATTGCTCTCTTGGGTGCTCAGAGATATTTCCCTATTATAGTAAACTGAAACACGAGGCTGTCTGTAACTTCAGACCATACAACTGTCCATATGCTGGATCAGACTGCTCCGCTGTTGGGGATATTCCATTCCTTGTTTCTCATCTCCGGGATGATCACAAGGTGGACATGCATTCCGGATGCACTTTTAATCATCGTTATGTAAAGTCTAATCCTCGTGAAGTAGAAAATGCCACGTGGATGTTAACTGTCTTCCACTGTTTTGGTCAGTACTTCTGTCTACATTTTGAAGCCTTCCAGCTTGGTATGGCCCCCGTTTACATGGCATTTCTCCGGTTCATGGGGGATGAAACAGAAGCTCGGAATTACAGCTACAGCTTGGAGGTTGGTGGAAATGGCCGAAAGCTGATTTGGGAGGGCAACCCAAGAAGCATAAGGGATAGCCACAAGAAGGTTAGAGACAGCCATGATGGCCTCATAATACAGCGCAACATGGCACTTTTCTTCTCTGGCGGGGATAGGAAAGAGCTGAAGCTGCGGGTCACGGGACGGATATGGAAGGAACAGCAGAACCCAGAAGGGGCGAAGGTTTGTGAAGTAATGCGTACGATTGCGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

320

Amino Acids

36.21

Weight (kDa)

6.62

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	54 - 89	2.7e-13	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	103 - 178	6.9e-30	Sina, zinc finger
Sina_TRAF	PF03145	198 - 295	6.3e-35	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61790
fragaria_vesca	FvH4_7g16630
malus_domestica	MD01G1082000.v1.1 MD07G1150400.v1.1
prunus_persica	Prupe.2G189200_v2.0.a1 Prupe.2G189200_v2.0.a1
pyrus_communis	pycom01g10960 pycom07g14890
rosa_chinensis	RchiOBHm_Chr1g0359721 RchiOBHm_Chr1g0359801
rosa_laevigata	RLG00000027853
rosa_multiflora	Rmu_ssc0000371.1_g000007
rosa_roxburghii	Rroxscaffold_4G00296820
rosa_rugosa	Rorug01G0272800
rosa_samantha	Rh1AG286500 Rh1AG286600 Rh1BG252300 Rh1BG252500 Rh1CG269700 Rh1DG281500
rosa_wichuraiana	Rw1G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	131, 255
AccB7I	CCANNNNNTGG	1 cut(s)	434
AccI	GTMKAC	2 cut(s)	268, 619
AccIII	TCCGGA	1 cut(s)	515
AciI	CCGC	4 cut(s)	450, 852, 877, 953
AclWI	GGATC	2 cut(s)	52, 445
AcoI	YGGCCR	2 cut(s)	64, 736
AcuI	CTGAAG	2 cut(s)	394, 890
AcvI	CACGTG	1 cut(s)	576
AdeI	CACNNNGTG	1 cut(s)	502
AfaI	GTAC	3 cut(s)	185, 611, 946
AfiI	CCNNNNNNNGG	5 cut(s)	434, 456, 679, 790, 919
AflIII	ACRYGT	1 cut(s)	263
AgsI	TTSAA	5 cut(s)	20, 158, 180, 326, 629
AjuI	GAANNNNNNNTTGG	2 cut(s)	733, 765
AluBI	AGCT	9 cut(s)	151, 277, 640, 698, 711, 717, 745, 868, 874
AluI	AGCT	9 cut(s)	151, 277, 640, 698, 711, 717, 745, 868, 874
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	1 cut(s)	792
AlwI	GGATC	2 cut(s)	52, 445
Aor13HI	TCCGGA	1 cut(s)	515
AoxI	GGCC	4 cut(s)	64, 648, 736, 811
ApeKI	GCWGC	1 cut(s)	874
AspLEI	GCGC	2 cut(s)	103, 828
AspS9I	GGNCC	1 cut(s)	649
AsuC2I	CCSGG	2 cut(s)	129, 488
AsuHPI	GGTGA	1 cut(s)	293
BaeGI	GKGCMC	1 cut(s)	260
BanI	GGYRCC	2 cut(s)	131, 255
BauI	CACGAG	3 cut(s)	146, 392, 555
BbrPI	CACGTG	1 cut(s)	576
BbsI	GAAGAC	1 cut(s)	583
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	1 cut(s)	861
BccI	CCATC	2 cut(s)	204, 803
BceAI	ACGGC	1 cut(s)	51
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	2 cut(s)	129, 488
BcoDI	GTCTC	1 cut(s)	792
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	712
BglI	GCCNNNNNGGC	1 cut(s)	810
BisI	GCNGC	1 cut(s)	875
BlsI	GCNGC	1 cut(s)	876
BmcAI	AGTACT	1 cut(s)	611
Bme1390I	CCNGG	2 cut(s)	129, 488
BmgT120I	GGNCC	1 cut(s)	649
BmiI	GGNNCC	3 cut(s)	133, 257, 651
BmrFI	CCNGG	2 cut(s)	129, 488
BmsI	GCATC	1 cut(s)	509
BpiI	GAAGAC	1 cut(s)	583
BpmI	CTGGAG	1 cut(s)	323
BpuMI	CCSGG	2 cut(s)	129, 488
BsaAI	YACGTR	1 cut(s)	576
BsaJI	CCNNGG	1 cut(s)	61
BsaWI	WCCGGW	2 cut(s)	515, 672
Bsc4I	CCNNNNNNNGG	5 cut(s)	434, 456, 679, 790, 919
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	306
BseAI	TCCGGA	1 cut(s)	515
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	4 cut(s)	496, 524, 585, 691
BseLI	CCNNNNNNNGG	5 cut(s)	434, 456, 679, 790, 919
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	306
BseSI	GKGCMC	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	861
BshFI	GGCC	4 cut(s)	66, 650, 738, 813
BshNI	GGYRCC	2 cut(s)	131, 255
BsiHKAI	GWGCWC	1 cut(s)	359
BsiSI	CCGG	5 cut(s)	114, 129, 487, 516, 673
BsiWI	CGTACG	1 cut(s)	944
BslFI	GGGAC	1 cut(s)	900
BslI	CCNNNNNNNGG	5 cut(s)	434, 456, 679, 790, 919
BsmAI	GTCTC	1 cut(s)	792
BsmFI	GGGAC	1 cut(s)	900
BsmI	GAATGC	2 cut(s)	164, 511
BsnI	GGCC	4 cut(s)	66, 650, 738, 813
Bsp1286I	GDGCHC	2 cut(s)	260, 359
Bsp13I	TCCGGA	1 cut(s)	515
Bsp143I	GATC	3 cut(s)	57, 437, 493
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	4 cut(s)	450, 852, 877, 953
BspANI	GGCC	4 cut(s)	66, 650, 738, 813
BspCNI	CTCAG	1 cut(s)	371
BspEI	TCCGGA	1 cut(s)	515
BspLI	GGNNCC	3 cut(s)	133, 257, 651
BspPI	GGATC	2 cut(s)	52, 445
BspT107I	GGYRCC	2 cut(s)	131, 255
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	306
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	3 cut(s)	57, 437, 493
BssSI	CACGAG	3 cut(s)	146, 392, 555
BssT1I	CCWWGG	1 cut(s)	61
Bst2BI	CACGAG	3 cut(s)	146, 392, 555
Bst4CI	ACNGT	3 cut(s)	425, 589, 599
BstAPI	GCANNNNNTGC	1 cut(s)	342
BstBAI	YACGTR	1 cut(s)	576
BstDEI	CTNAG	1 cut(s)	358
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	4 cut(s)	496, 524, 585, 691
BstHHI	GCGC	2 cut(s)	103, 828
BstKTI	GATC	3 cut(s)	60, 440, 496
BstMAI	GTCTC	1 cut(s)	792
BstMBI	GATC	3 cut(s)	57, 437, 493
BstMWI	GCNNNNNNNGC	7 cut(s)	114, 138, 168, 328, 342, 810, 874
BstNSI	RCATGY	1 cut(s)	511
BstSCI	CCNGG	2 cut(s)	127, 486
BstSFI	CTRYAG	1 cut(s)	712
BstSLI	GKGCMC	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	861
BstV2I	GAAGAC	1 cut(s)	583
BstX2I	RGATCY	1 cut(s)	57
BstXI	CCANNNNNNTGG	1 cut(s)	602
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	4 cut(s)	66, 650, 738, 813
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	4 cut(s)	496, 524, 585, 691
BtsIMutI	CAGTG	3 cut(s)	206, 299, 595
CfoI	GCGC	2 cut(s)	103, 828
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	649
CseI	GACGC	2 cut(s)	18, 130
Csp6I	GTAC	3 cut(s)	184, 610, 945
CviAII	CATG	6 cut(s)	62, 508, 661, 679, 806, 832
CviQI	GTAC	3 cut(s)	184, 610, 945
DdeI	CTNAG	1 cut(s)	358
DpnI	GATC	3 cut(s)	59, 439, 495
DpnII	GATC	3 cut(s)	57, 437, 493
DraIII	CACNNNGTG	1 cut(s)	502
EaeI	YGGCCR	2 cut(s)	64, 736
Eco130I	CCWWGG	1 cut(s)	61
Eco57I	CTGAAG	2 cut(s)	394, 890
Eco72I	CACGTG	1 cut(s)	576
EcoT14I	CCWWGG	1 cut(s)	61
EcoT22I	ATGCAT	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	6 cut(s)	65, 511, 664, 682, 809, 835
FaqI	GGGAC	1 cut(s)	900
FatI	CATG	6 cut(s)	61, 507, 660, 678, 805, 831
FauI	CCCGC	2 cut(s)	845, 870
FauNDI	CATATG	1 cut(s)	430
FbaI	TGATCA	1 cut(s)	493
FblI	GTMKAC	2 cut(s)	268, 619
Fnu4HI	GCNGC	1 cut(s)	875
FokI	GGATG	4 cut(s)	503, 531, 592, 698
Fsp4HI	GCNGC	1 cut(s)	875
FspBI	CTAG	1 cut(s)	296
GlaI	GCGC	2 cut(s)	102, 827
GluI	GCNGC	1 cut(s)	875
GsuI	CTGGAG	1 cut(s)	323
HaeIII	GGCC	4 cut(s)	66, 650, 738, 813
HapII	CCGG	5 cut(s)	114, 129, 487, 516, 673
HgaI	GACGC	2 cut(s)	18, 130
HhaI	GCGC	2 cut(s)	103, 828
Hin1II	CATG	6 cut(s)	65, 511, 664, 682, 809, 835
Hin6I	GCGC	2 cut(s)	101, 826
HinP1I	GCGC	2 cut(s)	101, 826
HincII	GTYRAC	1 cut(s)	585
HindII	GTYRAC	1 cut(s)	585
HinfI	GANTC	3 cut(s)	5, 73, 317
HpaI	GTTAAC	1 cut(s)	585
HpaII	CCGG	5 cut(s)	114, 129, 487, 516, 673
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	7 cut(s)	145, 269, 383, 505, 585, 620, 658
Hpy188I	TCNGA	7 cut(s)	10, 72, 96, 361, 413, 442, 702
Hpy188III	TCNNGA	3 cut(s)	155, 516, 557
Hpy8I	GTNNAC	7 cut(s)	145, 269, 383, 505, 585, 620, 658
HpyAV	CCTTC	7 cut(s)	91, 301, 643, 784, 892, 911, 919
HpyCH4III	ACNGT	3 cut(s)	425, 589, 599
HpyCH4IV	ACGT	2 cut(s)	263, 575
HpyCH4V	TGCA	5 cut(s)	171, 247, 336, 511, 522
HpyF10VI	GCNNNNNNNGC	7 cut(s)	114, 138, 168, 328, 342, 810, 874
HpyF3I	CTNAG	1 cut(s)	358
HpySE526I	ACGT	2 cut(s)	263, 575
Hsp92II	CATG	6 cut(s)	65, 511, 664, 682, 809, 835
HspAI	GCGC	2 cut(s)	101, 826
Kpn2I	TCCGGA	1 cut(s)	515
Ksp22I	TGATCA	1 cut(s)	493
KspAI	GTTAAC	1 cut(s)	585
Kzo9I	GATC	3 cut(s)	57, 437, 493
LmnI	GCTCC	2 cut(s)	274, 452
Lsp1109I	GCAGC	1 cut(s)	861
LweI	GCATC	1 cut(s)	509
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	2 cut(s)	263, 575
MaeIII	GTNAC	4 cut(s)	203, 281, 404, 880
MalI	GATC	3 cut(s)	59, 439, 495
MboI	GATC	3 cut(s)	57, 437, 493
MboII	GAAGA	2 cut(s)	583, 835
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	260, 359
MluCI	AATT	3 cut(s)	80, 175, 703
MnlI	CCTC	6 cut(s)	198, 388, 564, 715, 748, 824
Mph1103I	ATGCAT	1 cut(s)	513
MroI	TCCGGA	1 cut(s)	515
MseI	TTAA	2 cut(s)	528, 584
MslI	CAYNNNNRTG	2 cut(s)	537, 578
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	5 cut(s)	114, 129, 487, 516, 673
MspR9I	CCNGG	2 cut(s)	129, 488
Mva1269I	GAATGC	2 cut(s)	164, 511
MwoI	GCNNNNNNNGC	7 cut(s)	114, 138, 168, 328, 342, 810, 874
NciI	CCSGG	2 cut(s)	129, 488
NcoI	CCATGG	1 cut(s)	61
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	3 cut(s)	57, 437, 493
NlaIII	CATG	6 cut(s)	65, 511, 664, 682, 809, 835
NlaIV	GGNNCC	3 cut(s)	133, 257, 651
NmuCI	GTSAC	3 cut(s)	203, 281, 880
NsiI	ATGCAT	1 cut(s)	513
NspI	RCATGY	1 cut(s)	511
PctI	GAATGC	2 cut(s)	164, 511
PfeI	GAWTC	3 cut(s)	5, 73, 317
Pfl23II	CGTACG	1 cut(s)	944
PflMI	CCANNNNNTGG	1 cut(s)	434
PfoI	TCCNGGA	1 cut(s)	486
PkrI	GCNGC	1 cut(s)	876
PmaCI	CACGTG	1 cut(s)	576
PmlI	CACGTG	1 cut(s)	576
Ppu21I	YACGTR	1 cut(s)	576
PspCI	CACGTG	1 cut(s)	576
PspLI	CGTACG	1 cut(s)	944
PspN4I	GGNNCC	3 cut(s)	133, 257, 651
PspPI	GGNCC	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	3 cut(s)	185, 611, 946
RsaNI	GTAC	3 cut(s)	184, 610, 945
RseI	CAYNNNNRTG	2 cut(s)	537, 578
SaqAI	TTAA	2 cut(s)	528, 584
SatI	GCNGC	1 cut(s)	875
Sau3AI	GATC	3 cut(s)	57, 437, 493
Sau96I	GGNCC	1 cut(s)	649
ScaI	AGTACT	1 cut(s)	611
ScrFI	CCNGG	2 cut(s)	129, 488
SduI	GDGCHC	2 cut(s)	260, 359
SfaNI	GCATC	1 cut(s)	509
SfcI	CTRYAG	1 cut(s)	712
SmiMI	CAYNNNNRTG	2 cut(s)	537, 578
Sse9I	AATT	3 cut(s)	80, 175, 703
SsiI	CCGC	4 cut(s)	450, 852, 877, 953
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	127, 486
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	3 cut(s)	425, 589, 599
TaiI	ACGT	2 cut(s)	266, 578
TasI	AATT	3 cut(s)	80, 175, 703
TatI	WGTACW	1 cut(s)	609
TfiI	GAWTC	3 cut(s)	5, 73, 317
Tru1I	TTAA	2 cut(s)	528, 584
Tru9I	TTAA	2 cut(s)	528, 584
TscAI	CASTG	3 cut(s)	206, 306, 602
TseFI	GTSAC	3 cut(s)	203, 281, 880
TseI	GCWGC	1 cut(s)	874
Tsp45I	GTSAC	3 cut(s)	203, 281, 880
TspDTI	ATGAA	3 cut(s)	65, 667, 702
TspGWI	ACGGA	1 cut(s)	904
TspRI	CASTG	3 cut(s)	206, 306, 602
Van91I	CCANNNNNTGG	1 cut(s)	434
XceI	RCATGY	1 cut(s)	511
XmiI	GTMKAC	2 cut(s)	268, 619
XspI	CTAG	1 cut(s)	296
ZrmI	AGTACT	1 cut(s)	611
Zsp2I	ATGCAT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.