Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009759

Physical Location & Seq

Genomic Coordinates Reverse (-)

51553564 .. 51556049

Gene Structure 2486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG286600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGACCCAGAAAACATGGAGATTGTTCCACCGTCGGATTTGATGGACGACGACGAGATCCACGGCCGTCCTCGCCAGTTATTTACAGTTCCAAAGCCTCACAACAATGGCAATAACATTCCGGGAACCACCAGTGTTCATGAGCTTCTTGAATGCCCTGTTTGCACAAATTCAATGTACCCTCCAATCCATCAGTGCCATAACGGGCATACCCTTTGTTCCACCTGTAAAACAAGAGTGCATAATCGGTGCCCAACTTGTAGACAGGAGCTTGGTGACATAAGGTGTTTAGCACTGGAGAAGGTAGCTGAATCACTTGAACTGCCTTGCAAGTACTGCTCGCTTGGGTGCCCGGAGATATTCCCATATTATAGTAAACTGAAACATGAGGCTGTCTGTAACTTCAGACCATACAACTGTCCTTATGCTGGATCAGACTGCTCTGTTGTTGGGGATATTCCATTCCTTGTTGCTCATCTACGGGATGACCACAAGGTGGACATGCATTCTGGATGTACTTTTAACCATCGTTACGTTAAGTCTAATCCCCGCGAAGTAGAAAATGCCACATGGATGTTAACTGTTTTCCACTGCTTTGGTCAGTACTTCTGTCTCCATTTTGAAGCATTCCAGCTCGGTATGGCTCCTGTTTACATGGCATTTCTACGTTTCATGGGGGATGAAACAGAAGCTCGGAACTACACCTACAGCCTTGAGGTTGGAGGAAATGGCCGAAAGATCATATGGGAAGGAAATCCAAGAAGCATAAGGGATAGCCACAAGAAGGTTAGGGACAGCCATGATGGCCTCATAATACAGCGCAACATGGCGCTTTTCTTCTCTGGTGGGGATAGGAAAGAGCTGAAGCTGCGAGTTACAGGACGGATATGGAAGGAACAGCAGAACCCAGAAGGCGGTGCCTGCATCATACCTCTCTGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

314

Amino Acids

35.79

Weight (kDa)

6.59

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	52 - 87	4.1e-13	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	101 - 176	8e-30	Sina, zinc finger
Sina_TRAF	PF03145	196 - 293	1.9e-34	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61790
fragaria_vesca	FvH4_7g16630
malus_domestica	MD01G1082000.v1.1 MD07G1150400.v1.1
prunus_persica	Prupe.2G189200_v2.0.a1 Prupe.2G189200_v2.0.a1
pyrus_communis	pycom01g10960 pycom07g14890
rosa_chinensis	RchiOBHm_Chr1g0359721 RchiOBHm_Chr1g0359801
rosa_laevigata	RLG00000027853
rosa_multiflora	Rmu_ssc0000371.1_g000007
rosa_roxburghii	Rroxscaffold_4G00296820
rosa_rugosa	Rorug01G0272800
rosa_samantha	Rh1AG286500 Rh1AG286600 Rh1BG252300 Rh1BG252500 Rh1CG269700 Rh1DG281500
rosa_wichuraiana	Rw1G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	249, 348, 917
AccB7I	CCANNNNNTGG	1 cut(s)	496
AccI	GTMKAC	1 cut(s)	262
AccII	CGCG	1 cut(s)	552
AciI	CCGC	2 cut(s)	550, 915
AclWI	GGATC	2 cut(s)	52, 439
AcoI	YGGCCR	2 cut(s)	64, 730
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	2 cut(s)	388, 884
AdeI	CACNNNGTG	1 cut(s)	496
AfaI	GTAC	4 cut(s)	179, 335, 517, 605
AfiI	CCNNNNNNNGG	4 cut(s)	428, 496, 784, 914
AgsI	TTSAA	4 cut(s)	152, 174, 320, 623
AluBI	AGCT	7 cut(s)	145, 271, 308, 634, 692, 862, 868
AluI	AGCT	7 cut(s)	145, 271, 308, 634, 692, 862, 868
Alw26I	GTCTC	1 cut(s)	617
AlwI	GGATC	2 cut(s)	52, 439
AoxI	GGCC	3 cut(s)	64, 730, 805
ApeKI	GCWGC	1 cut(s)	868
ApoI	RAATTY	1 cut(s)	169
AspLEI	GCGC	2 cut(s)	822, 832
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	123, 353
AsuHPI	GGTGA	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	2 cut(s)	254, 353
BanI	GGYRCC	3 cut(s)	249, 348, 917
BbvI	GCAGC	1 cut(s)	855
BccI	CCATC	4 cut(s)	37, 198, 534, 797
BceAI	ACGGC	2 cut(s)	51, 79
BcnI	CCSGG	2 cut(s)	123, 353
BcoDI	GTCTC	1 cut(s)	617
BfmI	CTRYAG	2 cut(s)	706, 937
BfoI	RGCGCY	1 cut(s)	833
BglI	GCCNNNNNGGC	1 cut(s)	804
BisI	GCNGC	1 cut(s)	869
BlsI	GCNGC	1 cut(s)	870
BmcAI	AGTACT	2 cut(s)	335, 605
Bme1390I	CCNGG	2 cut(s)	123, 353
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	6 cut(s)	6, 127, 251, 350, 645, 919
BmrFI	CCNGG	2 cut(s)	123, 353
BmsI	GCATC	1 cut(s)	933
BpmI	CTGGAG	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	734
BpuMI	CCSGG	2 cut(s)	123, 353
BsaJI	CCNNGG	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	4 cut(s)	428, 496, 784, 914
Bse1I	ACTGG	3 cut(s)	76, 132, 300
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	4 cut(s)	490, 518, 579, 685
BseLI	CCNNNNNNNGG	4 cut(s)	428, 496, 784, 914
BseNI	ACTGG	3 cut(s)	76, 132, 300
BseSI	GKGCMC	2 cut(s)	254, 353
BseX3I	CGGCCG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	855
Bsh1236I	CGCG	1 cut(s)	552
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	3 cut(s)	66, 732, 807
BshNI	GGYRCC	3 cut(s)	249, 348, 917
BsiEI	CGRYCG	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	122, 353
BslFI	GGGAC	1 cut(s)	806
BslI	CCNNNNNNNGG	4 cut(s)	428, 496, 784, 914
BsmAI	GTCTC	1 cut(s)	617
BsmFI	GGGAC	1 cut(s)	806
BsmI	GAATGC	3 cut(s)	158, 505, 626
BsnI	GGCC	3 cut(s)	66, 732, 807
Bsp1286I	GDGCHC	2 cut(s)	254, 353
Bsp143I	GATC	3 cut(s)	57, 431, 738
BspACI	CCGC	2 cut(s)	550, 915
BspANI	GGCC	3 cut(s)	66, 732, 807
BspFNI	CGCG	1 cut(s)	552
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	6 cut(s)	6, 127, 251, 350, 645, 919
BspPI	GGATC	2 cut(s)	52, 439
BspT107I	GGYRCC	3 cut(s)	249, 348, 917
BsrI	ACTGG	3 cut(s)	76, 132, 300
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	3 cut(s)	57, 431, 738
Bst4CI	ACNGT	4 cut(s)	33, 88, 419, 583
BstAPI	GCANNNNNTGC	1 cut(s)	336
BstC8I	GCNNGC	2 cut(s)	341, 922
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	4 cut(s)	490, 518, 579, 685
BstFNI	CGCG	1 cut(s)	552
BstH2I	RGCGCY	1 cut(s)	833
BstHHI	GCGC	2 cut(s)	822, 832
BstKTI	GATC	3 cut(s)	60, 434, 741
BstMAI	GTCTC	1 cut(s)	617
BstMBI	GATC	3 cut(s)	57, 431, 738
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	6 cut(s)	72, 162, 336, 804, 868, 921
BstNSI	RCATGY	1 cut(s)	505
BstSCI	CCNGG	2 cut(s)	121, 351
BstSFI	CTRYAG	2 cut(s)	706, 937
BstSLI	GKGCMC	2 cut(s)	254, 353
BstUI	CGCG	1 cut(s)	552
BstV1I	GCAGC	1 cut(s)	855
BstX2I	RGATCY	1 cut(s)	57
BstXI	CCANNNNNNTGG	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	57
BstZI	CGGCCG	1 cut(s)	64
BsuRI	GGCC	3 cut(s)	66, 732, 807
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	4 cut(s)	490, 518, 579, 685
BtsI	GCAGTG	1 cut(s)	589
BtsIMutI	CAGTG	4 cut(s)	139, 200, 293, 589
Cac8I	GCNNGC	2 cut(s)	341, 922
CciI	TCATGA	1 cut(s)	139
CfoI	GCGC	2 cut(s)	822, 832
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	4 cut(s)	178, 334, 516, 604
CviAII	CATG	9 cut(s)	16, 140, 386, 502, 570, 655, 673, 800, 826
CviQI	GTAC	4 cut(s)	178, 334, 516, 604
DpnI	GATC	3 cut(s)	59, 433, 740
DpnII	GATC	3 cut(s)	57, 431, 738
DraIII	CACNNNGTG	1 cut(s)	496
EaeI	YGGCCR	2 cut(s)	64, 730
EagI	CGGCCG	1 cut(s)	64
EclXI	CGGCCG	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	4
Eco52I	CGGCCG	1 cut(s)	64
Eco57I	CTGAAG	2 cut(s)	388, 884
EcoT22I	ATGCAT	1 cut(s)	507
FaeI	CATG	9 cut(s)	19, 143, 389, 505, 573, 658, 676, 803, 829
FaqI	GGGAC	1 cut(s)	806
FatI	CATG	9 cut(s)	15, 139, 385, 501, 569, 654, 672, 799, 825
FauI	CCCGC	1 cut(s)	557
FauNDI	CATATG	1 cut(s)	743
FblI	GTMKAC	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	869
FokI	GGATG	4 cut(s)	497, 525, 586, 692
Fsp4HI	GCNGC	1 cut(s)	869
GlaI	GCGC	2 cut(s)	821, 831
GluI	GCNGC	1 cut(s)	869
GsuI	CTGGAG	1 cut(s)	317
HaeII	RGCGCY	1 cut(s)	833
HaeIII	GGCC	3 cut(s)	66, 732, 807
HapII	CCGG	2 cut(s)	122, 353
HhaI	GCGC	2 cut(s)	822, 832
Hin1II	CATG	9 cut(s)	19, 143, 389, 505, 573, 658, 676, 803, 829
Hin6I	GCGC	2 cut(s)	820, 830
HinP1I	GCGC	2 cut(s)	820, 830
HincII	GTYRAC	1 cut(s)	579
HindII	GTYRAC	1 cut(s)	579
HinfI	GANTC	1 cut(s)	311
HpaI	GTTAAC	1 cut(s)	579
HpaII	CCGG	2 cut(s)	122, 353
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	5 cut(s)	263, 377, 499, 579, 652
Hpy188I	TCNGA	4 cut(s)	37, 407, 436, 696
Hpy188III	TCNNGA	3 cut(s)	140, 149, 510
Hpy8I	GTNNAC	5 cut(s)	263, 377, 499, 579, 652
Hpy99I	CGWCG	3 cut(s)	37, 53, 56
HpyAV	CCTTC	5 cut(s)	295, 743, 778, 886, 905
HpyCH4III	ACNGT	4 cut(s)	33, 88, 419, 583
HpyCH4IV	ACGT	2 cut(s)	534, 667
HpyCH4V	TGCA	5 cut(s)	165, 241, 330, 505, 924
HpyF10VI	GCNNNNNNNGC	6 cut(s)	72, 162, 336, 804, 868, 921
HpySE526I	ACGT	2 cut(s)	534, 667
Hsp92II	CATG	9 cut(s)	19, 143, 389, 505, 573, 658, 676, 803, 829
HspAI	GCGC	2 cut(s)	820, 830
KspAI	GTTAAC	1 cut(s)	579
Kzo9I	GATC	3 cut(s)	57, 431, 738
LmnI	GCTCC	2 cut(s)	268, 649
Lsp1109I	GCAGC	1 cut(s)	855
LweI	GCATC	1 cut(s)	933
MaeII	ACGT	2 cut(s)	534, 667
MaeIII	GTNAC	4 cut(s)	275, 398, 530, 874
MalI	GATC	3 cut(s)	59, 433, 740
MboI	GATC	3 cut(s)	57, 431, 738
MboII	GAAGA	1 cut(s)	829
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	254, 353
MluCI	AATT	1 cut(s)	169
MmeI	TCCRAC	2 cut(s)	15, 700
MnlI	CCTC	8 cut(s)	81, 108, 192, 382, 709, 716, 818, 942
Mph1103I	ATGCAT	1 cut(s)	507
MseI	TTAA	3 cut(s)	522, 537, 578
MslI	CAYNNNNRTG	2 cut(s)	105, 572
MspI	CCGG	2 cut(s)	122, 353
MspR9I	CCNGG	2 cut(s)	123, 353
Mva1269I	GAATGC	3 cut(s)	158, 505, 626
MvnI	CGCG	1 cut(s)	552
MwoI	GCNNNNNNNGC	6 cut(s)	72, 162, 336, 804, 868, 921
NciI	CCSGG	2 cut(s)	123, 353
NdeI	CATATG	1 cut(s)	743
NdeII	GATC	3 cut(s)	57, 431, 738
NlaIII	CATG	9 cut(s)	19, 143, 389, 505, 573, 658, 676, 803, 829
NlaIV	GGNNCC	6 cut(s)	6, 127, 251, 350, 645, 919
NmuCI	GTSAC	1 cut(s)	275
NsiI	ATGCAT	1 cut(s)	507
NspI	RCATGY	1 cut(s)	505
PagI	TCATGA	1 cut(s)	139
PctI	GAATGC	3 cut(s)	158, 505, 626
PfeI	GAWTC	1 cut(s)	311
PflMI	CCANNNNNTGG	1 cut(s)	496
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	870
PspN4I	GGNNCC	6 cut(s)	6, 127, 251, 350, 645, 919
PspPI	GGNCC	1 cut(s)	4
PsrI	GAACNNNNNNTAC	2 cut(s)	689, 721
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	4 cut(s)	179, 335, 517, 605
RsaNI	GTAC	4 cut(s)	178, 334, 516, 604
RseI	CAYNNNNRTG	2 cut(s)	105, 572
SaqAI	TTAA	3 cut(s)	522, 537, 578
SatI	GCNGC	1 cut(s)	869
Sau3AI	GATC	3 cut(s)	57, 431, 738
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	2 cut(s)	335, 605
ScrFI	CCNGG	2 cut(s)	123, 353
SduI	GDGCHC	2 cut(s)	254, 353
SfaNI	GCATC	1 cut(s)	933
SfcI	CTRYAG	2 cut(s)	706, 937
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	105, 572
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	2 cut(s)	550, 915
StyD4I	CCNGG	2 cut(s)	121, 351
TaaI	ACNGT	4 cut(s)	33, 88, 419, 583
TaiI	ACGT	2 cut(s)	537, 670
TasI	AATT	1 cut(s)	169
TatI	WGTACW	3 cut(s)	333, 515, 603
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	3 cut(s)	522, 537, 578
Tru9I	TTAA	3 cut(s)	522, 537, 578
TscAI	CASTG	4 cut(s)	139, 200, 300, 596
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	1 cut(s)	868
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	3 cut(s)	128, 661, 696
TspGWI	ACGGA	1 cut(s)	898
TspRI	CASTG	4 cut(s)	139, 200, 300, 596
Van91I	CCANNNNNTGG	1 cut(s)	496
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	1 cut(s)	505
XmiI	GTMKAC	1 cut(s)	262
ZrmI	AGTACT	2 cut(s)	335, 605
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.