Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009759

Physical Location & Seq

Genomic Coordinates Reverse (-)

53564420 .. 53567456

Gene Structure 3037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG269700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAAAATGGACCCAGAAAACATGGAGATTGTTCCACCGTCGGATTTGATGGACGACGACGACGAGATCCACGGCCGTCCTCGCCAGTTATTTACAGTTCCAAAGCCTCACAACAATGGCAATAACATTCCGGGAACCACCAGTGTTCATGAGCTTCTTGAATGCCCTGTTTGCACAAATTCAATGTACCCTCCAATCCATCAGTGCCATAACGGGCATACCCTTTGTTCCACCTGTAAAACAAGAGTGCATAATCGGTGCCCAACTTGTAGACAGGAGCTTGGTGACATAAGGTGTTTAGCACTGGAGAAGGTAGCTGAATCACTTGAACTGCCTTGCAAGTACTGCTCGCTTGGGTGCCCGGAGATATTCCCATATTATAGTAAACTGAAACATGAGGCTGTCTGTAACTTCAGACCGTACAACTGTCCTTATGCTGGATCAGACTGCTCTGTTGTTGGGGATATTCCATTCCTTGTTGCTCATCTACGGGATGACCACAAGGTGGACATGCATTCTGGATGTACTTTTAACCATCGTTACGTTAAGTCTAATCCCCGCGAAGTAGAAAATGCCACATGGATGTTAACTGTTTTCCACTGCTTTGGTCAGTACTTCTGTCTCCATTTTGAAGCATTCCAGCTCGGTATGGCTCCTGTTTACATGGCATTTCTACGTTTCATGGGGGATGAAACAGAAGCTCGGAACTACACCTACAGCCTTGAGGTTGGAGGAAATGGCCGAAAGATCATATGGGAAGGAAATCCAAGAAGCATAAGGGATAGCCACAAGAAGGTTAGGGACAGCCATGATGGCCTCATAATACAGCGCAACATGGCACTTTTCTTCTCTGGTGGGGATAGGAAAGAGCTGAAGCTGCGAGTTACAGGACGGATATGGAAGGAACAGCAGAACCCAGAAGGCGGTGCCTGCATCATACCTCTCTGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

317

Amino Acids

36.16

Weight (kDa)

6.59

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	55 - 90	4.1e-13	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	104 - 179	8.1e-30	Sina, zinc finger
Sina_TRAF	PF03145	199 - 296	1.9e-34	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61790
fragaria_vesca	FvH4_7g16630
malus_domestica	MD01G1082000.v1.1 MD07G1150400.v1.1
prunus_persica	Prupe.2G189200_v2.0.a1 Prupe.2G189200_v2.0.a1
pyrus_communis	pycom01g10960 pycom07g14890
rosa_chinensis	RchiOBHm_Chr1g0359721 RchiOBHm_Chr1g0359801
rosa_laevigata	RLG00000027853
rosa_multiflora	Rmu_ssc0000371.1_g000007
rosa_roxburghii	Rroxscaffold_4G00296820
rosa_rugosa	Rorug01G0272800
rosa_samantha	Rh1AG286500 Rh1AG286600 Rh1BG252300 Rh1BG252500 Rh1CG269700 Rh1DG281500
rosa_wichuraiana	Rw1G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	258, 357, 926
AccB7I	CCANNNNNTGG	1 cut(s)	505
AccI	GTMKAC	1 cut(s)	271
AccII	CGCG	1 cut(s)	561
AciI	CCGC	2 cut(s)	559, 924
AclWI	GGATC	2 cut(s)	61, 448
AcoI	YGGCCR	2 cut(s)	73, 739
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	2 cut(s)	397, 893
AdeI	CACNNNGTG	1 cut(s)	505
AfaI	GTAC	5 cut(s)	188, 344, 422, 526, 614
AfiI	CCNNNNNNNGG	4 cut(s)	437, 505, 793, 923
AgsI	TTSAA	4 cut(s)	161, 183, 329, 632
AluBI	AGCT	7 cut(s)	154, 280, 317, 643, 701, 871, 877
AluI	AGCT	7 cut(s)	154, 280, 317, 643, 701, 871, 877
Alw26I	GTCTC	1 cut(s)	626
AlwI	GGATC	2 cut(s)	61, 448
AoxI	GGCC	3 cut(s)	73, 739, 814
ApeKI	GCWGC	1 cut(s)	877
ApoI	RAATTY	1 cut(s)	178
AspLEI	GCGC	1 cut(s)	831
AspS9I	GGNCC	1 cut(s)	10
AsuC2I	CCSGG	2 cut(s)	132, 362
AsuHPI	GGTGA	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	10
BaeGI	GKGCMC	2 cut(s)	263, 362
BanI	GGYRCC	3 cut(s)	258, 357, 926
BbvI	GCAGC	1 cut(s)	864
BccI	CCATC	4 cut(s)	43, 207, 543, 806
BceAI	ACGGC	2 cut(s)	60, 88
BcnI	CCSGG	2 cut(s)	132, 362
BcoDI	GTCTC	1 cut(s)	626
BfmI	CTRYAG	2 cut(s)	715, 946
BglI	GCCNNNNNGGC	1 cut(s)	813
BisI	GCNGC	1 cut(s)	878
BlsI	GCNGC	1 cut(s)	879
BmcAI	AGTACT	2 cut(s)	344, 614
Bme1390I	CCNGG	2 cut(s)	132, 362
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	6 cut(s)	12, 136, 260, 359, 654, 928
BmrFI	CCNGG	2 cut(s)	132, 362
BmsI	GCATC	1 cut(s)	942
BpmI	CTGGAG	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	743
BpuMI	CCSGG	2 cut(s)	132, 362
BsaJI	CCNNGG	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	4 cut(s)	437, 505, 793, 923
Bse1I	ACTGG	3 cut(s)	85, 141, 309
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	4 cut(s)	499, 527, 588, 694
BseLI	CCNNNNNNNGG	4 cut(s)	437, 505, 793, 923
BseNI	ACTGG	3 cut(s)	85, 141, 309
BseSI	GKGCMC	2 cut(s)	263, 362
BseX3I	CGGCCG	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	864
Bsh1236I	CGCG	1 cut(s)	561
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	3 cut(s)	75, 741, 816
BshNI	GGYRCC	3 cut(s)	258, 357, 926
BsiEI	CGRYCG	1 cut(s)	76
BsiSI	CCGG	2 cut(s)	131, 362
BslFI	GGGAC	1 cut(s)	815
BslI	CCNNNNNNNGG	4 cut(s)	437, 505, 793, 923
BsmAI	GTCTC	1 cut(s)	626
BsmFI	GGGAC	1 cut(s)	815
BsmI	GAATGC	3 cut(s)	167, 514, 635
BsnI	GGCC	3 cut(s)	75, 741, 816
Bsp1286I	GDGCHC	2 cut(s)	263, 362
Bsp143I	GATC	3 cut(s)	66, 440, 747
BspACI	CCGC	2 cut(s)	559, 924
BspANI	GGCC	3 cut(s)	75, 741, 816
BspFNI	CGCG	1 cut(s)	561
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	6 cut(s)	12, 136, 260, 359, 654, 928
BspPI	GGATC	2 cut(s)	61, 448
BspT107I	GGYRCC	3 cut(s)	258, 357, 926
BsrI	ACTGG	3 cut(s)	85, 141, 309
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	3 cut(s)	66, 440, 747
Bst4CI	ACNGT	5 cut(s)	39, 97, 420, 428, 592
BstAPI	GCANNNNNTGC	1 cut(s)	345
BstC8I	GCNNGC	2 cut(s)	350, 931
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	4 cut(s)	499, 527, 588, 694
BstFNI	CGCG	1 cut(s)	561
BstHHI	GCGC	1 cut(s)	831
BstKTI	GATC	3 cut(s)	69, 443, 750
BstMAI	GTCTC	1 cut(s)	626
BstMBI	GATC	3 cut(s)	66, 440, 747
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	6 cut(s)	81, 171, 345, 813, 877, 930
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	2 cut(s)	130, 360
BstSFI	CTRYAG	2 cut(s)	715, 946
BstSLI	GKGCMC	2 cut(s)	263, 362
BstUI	CGCG	1 cut(s)	561
BstV1I	GCAGC	1 cut(s)	864
BstX2I	RGATCY	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	605
BstYI	RGATCY	1 cut(s)	66
BstZI	CGGCCG	1 cut(s)	73
BsuRI	GGCC	3 cut(s)	75, 741, 816
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	4 cut(s)	499, 527, 588, 694
BtsI	GCAGTG	1 cut(s)	598
BtsIMutI	CAGTG	4 cut(s)	148, 209, 302, 598
Cac8I	GCNNGC	2 cut(s)	350, 931
CciI	TCATGA	1 cut(s)	148
CfoI	GCGC	1 cut(s)	831
Cfr13I	GGNCC	1 cut(s)	10
Csp6I	GTAC	5 cut(s)	187, 343, 421, 525, 613
CviAII	CATG	9 cut(s)	22, 149, 395, 511, 579, 664, 682, 809, 835
CviQI	GTAC	5 cut(s)	187, 343, 421, 525, 613
DpnI	GATC	3 cut(s)	68, 442, 749
DpnII	GATC	3 cut(s)	66, 440, 747
DraIII	CACNNNGTG	1 cut(s)	505
EaeI	YGGCCR	2 cut(s)	73, 739
EagI	CGGCCG	1 cut(s)	73
EclXI	CGGCCG	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	10
Eco52I	CGGCCG	1 cut(s)	73
Eco57I	CTGAAG	2 cut(s)	397, 893
EcoT22I	ATGCAT	1 cut(s)	516
FaeI	CATG	9 cut(s)	25, 152, 398, 514, 582, 667, 685, 812, 838
FaqI	GGGAC	1 cut(s)	815
FatI	CATG	9 cut(s)	21, 148, 394, 510, 578, 663, 681, 808, 834
FauI	CCCGC	1 cut(s)	566
FauNDI	CATATG	1 cut(s)	752
FblI	GTMKAC	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	878
FokI	GGATG	4 cut(s)	506, 534, 595, 701
Fsp4HI	GCNGC	1 cut(s)	878
GlaI	GCGC	1 cut(s)	830
GluI	GCNGC	1 cut(s)	878
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	75, 741, 816
HapII	CCGG	2 cut(s)	131, 362
HhaI	GCGC	1 cut(s)	831
Hin1II	CATG	9 cut(s)	25, 152, 398, 514, 582, 667, 685, 812, 838
Hin6I	GCGC	1 cut(s)	829
HinP1I	GCGC	1 cut(s)	829
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HinfI	GANTC	1 cut(s)	320
HpaI	GTTAAC	1 cut(s)	588
HpaII	CCGG	2 cut(s)	131, 362
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	5 cut(s)	272, 386, 508, 588, 661
Hpy188I	TCNGA	4 cut(s)	43, 416, 445, 705
Hpy188III	TCNNGA	3 cut(s)	149, 158, 519
Hpy8I	GTNNAC	5 cut(s)	272, 386, 508, 588, 661
Hpy99I	CGWCG	4 cut(s)	43, 59, 62, 65
HpyAV	CCTTC	5 cut(s)	304, 752, 787, 895, 914
HpyCH4III	ACNGT	5 cut(s)	39, 97, 420, 428, 592
HpyCH4IV	ACGT	2 cut(s)	543, 676
HpyCH4V	TGCA	5 cut(s)	174, 250, 339, 514, 933
HpyF10VI	GCNNNNNNNGC	6 cut(s)	81, 171, 345, 813, 877, 930
HpySE526I	ACGT	2 cut(s)	543, 676
Hsp92II	CATG	9 cut(s)	25, 152, 398, 514, 582, 667, 685, 812, 838
HspAI	GCGC	1 cut(s)	829
KspAI	GTTAAC	1 cut(s)	588
Kzo9I	GATC	3 cut(s)	66, 440, 747
LmnI	GCTCC	2 cut(s)	277, 658
Lsp1109I	GCAGC	1 cut(s)	864
LweI	GCATC	1 cut(s)	942
MaeII	ACGT	2 cut(s)	543, 676
MaeIII	GTNAC	4 cut(s)	284, 407, 539, 883
MalI	GATC	3 cut(s)	68, 442, 749
MboI	GATC	3 cut(s)	66, 440, 747
MboII	GAAGA	1 cut(s)	838
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	2 cut(s)	263, 362
MluCI	AATT	1 cut(s)	178
MmeI	TCCRAC	2 cut(s)	21, 709
MnlI	CCTC	8 cut(s)	90, 117, 201, 391, 718, 725, 827, 951
Mph1103I	ATGCAT	1 cut(s)	516
MseI	TTAA	3 cut(s)	531, 546, 587
MslI	CAYNNNNRTG	2 cut(s)	114, 581
MspI	CCGG	2 cut(s)	131, 362
MspR9I	CCNGG	2 cut(s)	132, 362
Mva1269I	GAATGC	3 cut(s)	167, 514, 635
MvnI	CGCG	1 cut(s)	561
MwoI	GCNNNNNNNGC	6 cut(s)	81, 171, 345, 813, 877, 930
NciI	CCSGG	2 cut(s)	132, 362
NdeI	CATATG	1 cut(s)	752
NdeII	GATC	3 cut(s)	66, 440, 747
NlaIII	CATG	9 cut(s)	25, 152, 398, 514, 582, 667, 685, 812, 838
NlaIV	GGNNCC	6 cut(s)	12, 136, 260, 359, 654, 928
NmuCI	GTSAC	1 cut(s)	284
NsiI	ATGCAT	1 cut(s)	516
NspI	RCATGY	1 cut(s)	514
PagI	TCATGA	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PctI	GAATGC	3 cut(s)	167, 514, 635
PfeI	GAWTC	1 cut(s)	320
PflMI	CCANNNNNTGG	1 cut(s)	505
PfoI	TCCNGGA	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	879
PspN4I	GGNNCC	6 cut(s)	12, 136, 260, 359, 654, 928
PspPI	GGNCC	1 cut(s)	10
PsrI	GAACNNNNNNTAC	2 cut(s)	698, 730
PsuI	RGATCY	1 cut(s)	66
RsaI	GTAC	5 cut(s)	188, 344, 422, 526, 614
RsaNI	GTAC	5 cut(s)	187, 343, 421, 525, 613
RseI	CAYNNNNRTG	2 cut(s)	114, 581
SaqAI	TTAA	3 cut(s)	531, 546, 587
SatI	GCNGC	1 cut(s)	878
Sau3AI	GATC	3 cut(s)	66, 440, 747
Sau96I	GGNCC	1 cut(s)	10
ScaI	AGTACT	2 cut(s)	344, 614
ScrFI	CCNGG	2 cut(s)	132, 362
SduI	GDGCHC	2 cut(s)	263, 362
SfaNI	GCATC	1 cut(s)	942
SfcI	CTRYAG	2 cut(s)	715, 946
SinI	GGWCC	1 cut(s)	10
SmiMI	CAYNNNNRTG	2 cut(s)	114, 581
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	2 cut(s)	559, 924
StyD4I	CCNGG	2 cut(s)	130, 360
TaaI	ACNGT	5 cut(s)	39, 97, 420, 428, 592
TaiI	ACGT	2 cut(s)	546, 679
TasI	AATT	1 cut(s)	178
TatI	WGTACW	3 cut(s)	342, 524, 612
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	3 cut(s)	531, 546, 587
Tru9I	TTAA	3 cut(s)	531, 546, 587
TscAI	CASTG	4 cut(s)	148, 209, 309, 605
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	877
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	4 cut(s)	17, 137, 670, 705
TspGWI	ACGGA	1 cut(s)	907
TspRI	CASTG	4 cut(s)	148, 209, 309, 605
Van91I	CCANNNNNTGG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	1 cut(s)	178
XceI	RCATGY	1 cut(s)	514
XmiI	GTMKAC	1 cut(s)	271
ZrmI	AGTACT	2 cut(s)	344, 614
Zsp2I	ATGCAT	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.