Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009759

Physical Location & Seq

Genomic Coordinates Reverse (-)

50300154 .. 50303923

Gene Structure 3770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG281500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCGTTTAACTCTGAAATTTTGTTTCTGCAGTGCCATAATGGGCATACCCTTTGTTCCACCTGTAAAACAAGAGTGCATAATCGGTGCCCAACTTGTAGACAGGAGCTTGGTGACATAAGGTGTTTAGCACTGGAGAAGGTAGCTGAATCACTTGAACTGCCTTGCAAATACTGCTCTCTTGGGTGCCCGGAGATATTCCCATATTATAGTAAACTGAAACATGAGGCTGTCTGTAACTTCAGACCATACAACTGTCCTTATGCTGGATCAGACTGCTCCGTTGTTGGGGATATTCCATTCCTTGTTGCTCATCTACGGGATGACCACAAAGTGGACATGCATTCTGGATGTACTTTTAACCATCGTTACGTTAAGTCTAATCCCCGCGAAGTAGAAAATGCCACATGGATGTTAACTGTTTTCCACTGCTTTGGTCAGTACTTCTGTCTCCATTTTGAAGCATTCCAGCTTGGTATGGCTCCTGTTTACATGGCATTTCTACGTTTCATGGGGGATGAAACAGAAGCTCGGAACTACACCTACAGCCTTGAGGTTGGAGGAAATGGCCGAAAGATCATATGGGAAGGAAATCCAAGAAGCATAAGGGATAGCCACAAGAAGGTTAGGGACAGCCATGATGGCCTCATAATACAGCGCAACATGGCGCTTTTCTTCTCTGGTGGGGATAGGAAAGAGCTGAAGCTGCGAGTTACGGGACGGATATGGAAAGAACAGCAGAACCCAGAAGGCGGTGCCTGCATCATACCTCTCTGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

260

Amino Acids

29.78

Weight (kDa)

8.1

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	10 - 33	7.7e-07	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	47 - 122	5.6e-30	Sina, zinc finger
Sina_TRAF	PF03145	142 - 239	1.3e-34	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61790
fragaria_vesca	FvH4_7g16630
malus_domestica	MD01G1082000.v1.1 MD07G1150400.v1.1
prunus_persica	Prupe.2G189200_v2.0.a1 Prupe.2G189200_v2.0.a1
pyrus_communis	pycom01g10960 pycom07g14890
rosa_chinensis	RchiOBHm_Chr1g0359721 RchiOBHm_Chr1g0359801
rosa_laevigata	RLG00000027853
rosa_multiflora	Rmu_ssc0000371.1_g000007
rosa_roxburghii	Rroxscaffold_4G00296820
rosa_rugosa	Rorug01G0272800
rosa_samantha	Rh1AG286500 Rh1AG286600 Rh1BG252300 Rh1BG252500 Rh1CG269700 Rh1DG281500
rosa_wichuraiana	Rw1G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	87, 186, 755
AccB7I	CCANNNNNTGG	1 cut(s)	334
AccI	GTMKAC	1 cut(s)	100
AccII	CGCG	1 cut(s)	390
AciI	CCGC	2 cut(s)	388, 753
AclWI	GGATC	1 cut(s)	277
AcoI	YGGCCR	1 cut(s)	568
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	2 cut(s)	226, 722
AdeI	CACNNNGTG	1 cut(s)	334
AfaI	GTAC	2 cut(s)	355, 443
AfiI	CCNNNNNNNGG	5 cut(s)	266, 288, 334, 622, 752
AgsI	TTSAA	2 cut(s)	158, 461
AluBI	AGCT	6 cut(s)	109, 146, 472, 530, 700, 706
AluI	AGCT	6 cut(s)	109, 146, 472, 530, 700, 706
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	1 cut(s)	277
AoxI	GGCC	2 cut(s)	568, 643
ApeKI	GCWGC	1 cut(s)	706
ApoI	RAATTY	1 cut(s)	18
AspLEI	GCGC	2 cut(s)	660, 670
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	125
BaeGI	GKGCMC	2 cut(s)	92, 191
BanI	GGYRCC	3 cut(s)	87, 186, 755
BbvI	GCAGC	1 cut(s)	693
BccI	CCATC	2 cut(s)	372, 635
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	455
BfmI	CTRYAG	3 cut(s)	29, 544, 775
BfoI	RGCGCY	1 cut(s)	671
BglI	GCCNNNNNGGC	1 cut(s)	642
BisI	GCNGC	1 cut(s)	707
BlsI	GCNGC	1 cut(s)	708
BmcAI	AGTACT	1 cut(s)	443
Bme1390I	CCNGG	1 cut(s)	191
BmiI	GGNNCC	4 cut(s)	89, 188, 483, 757
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	771
BpmI	CTGGAG	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	572
BpuMI	CCSGG	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	5 cut(s)	266, 288, 334, 622, 752
Bse1I	ACTGG	1 cut(s)	138
BseGI	GGATG	4 cut(s)	328, 356, 417, 523
BseLI	CCNNNNNNNGG	5 cut(s)	266, 288, 334, 622, 752
BseNI	ACTGG	1 cut(s)	138
BseSI	GKGCMC	2 cut(s)	92, 191
BseXI	GCAGC	1 cut(s)	693
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	2 cut(s)	570, 645
BshNI	GGYRCC	3 cut(s)	87, 186, 755
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	2 cut(s)	644, 732
BslI	CCNNNNNNNGG	5 cut(s)	266, 288, 334, 622, 752
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	2 cut(s)	644, 732
BsmI	GAATGC	2 cut(s)	343, 464
BsnI	GGCC	2 cut(s)	570, 645
Bsp1286I	GDGCHC	2 cut(s)	92, 191
Bsp143I	GATC	2 cut(s)	269, 576
BspACI	CCGC	2 cut(s)	388, 753
BspANI	GGCC	2 cut(s)	570, 645
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	4 cut(s)	89, 188, 483, 757
BspMAI	CTGCAG	1 cut(s)	33
BspPI	GGATC	1 cut(s)	277
BspT107I	GGYRCC	3 cut(s)	87, 186, 755
BsrI	ACTGG	1 cut(s)	138
BssMI	GATC	2 cut(s)	269, 576
Bst4CI	ACNGT	2 cut(s)	257, 421
BstAPI	GCANNNNNTGC	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	760
BstF5I	GGATG	4 cut(s)	328, 356, 417, 523
BstFNI	CGCG	1 cut(s)	390
BstH2I	RGCGCY	1 cut(s)	671
BstHHI	GCGC	2 cut(s)	660, 670
BstKTI	GATC	2 cut(s)	272, 579
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	2 cut(s)	269, 576
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 642, 706, 759
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	3 cut(s)	29, 544, 775
BstSLI	GKGCMC	2 cut(s)	92, 191
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	693
BstXI	CCANNNNNNTGG	1 cut(s)	434
BsuRI	GGCC	2 cut(s)	570, 645
BtsCI	GGATG	4 cut(s)	328, 356, 417, 523
BtsI	GCAGTG	2 cut(s)	38, 427
BtsIMutI	CAGTG	3 cut(s)	38, 131, 427
Cac8I	GCNNGC	1 cut(s)	760
CfoI	GCGC	2 cut(s)	660, 670
Csp6I	GTAC	2 cut(s)	354, 442
CviAII	CATG	7 cut(s)	224, 340, 408, 493, 511, 638, 664
CviQI	GTAC	2 cut(s)	354, 442
DpnI	GATC	2 cut(s)	271, 578
DpnII	GATC	2 cut(s)	269, 576
DraIII	CACNNNGTG	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	568
Eco57I	CTGAAG	2 cut(s)	226, 722
EcoT22I	ATGCAT	1 cut(s)	345
FaeI	CATG	7 cut(s)	227, 343, 411, 496, 514, 641, 667
FaqI	GGGAC	2 cut(s)	644, 732
FatI	CATG	7 cut(s)	223, 339, 407, 492, 510, 637, 663
FauI	CCCGC	1 cut(s)	395
FauNDI	CATATG	1 cut(s)	581
FblI	GTMKAC	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	707
FokI	GGATG	4 cut(s)	335, 363, 424, 530
Fsp4HI	GCNGC	1 cut(s)	707
GlaI	GCGC	2 cut(s)	659, 669
GluI	GCNGC	1 cut(s)	707
GsuI	CTGGAG	1 cut(s)	155
HaeII	RGCGCY	1 cut(s)	671
HaeIII	GGCC	2 cut(s)	570, 645
HapII	CCGG	1 cut(s)	191
HhaI	GCGC	2 cut(s)	660, 670
Hin1II	CATG	7 cut(s)	227, 343, 411, 496, 514, 641, 667
Hin6I	GCGC	2 cut(s)	658, 668
HinP1I	GCGC	2 cut(s)	658, 668
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HinfI	GANTC	1 cut(s)	149
HpaI	GTTAAC	1 cut(s)	417
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	5 cut(s)	101, 215, 337, 417, 490
Hpy188I	TCNGA	4 cut(s)	16, 245, 274, 534
Hpy188III	TCNNGA	1 cut(s)	348
Hpy8I	GTNNAC	5 cut(s)	101, 215, 337, 417, 490
HpyAV	CCTTC	4 cut(s)	133, 581, 616, 743
HpyCH4III	ACNGT	2 cut(s)	257, 421
HpyCH4IV	ACGT	2 cut(s)	372, 505
HpyCH4V	TGCA	5 cut(s)	31, 79, 168, 343, 762
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 642, 706, 759
HpySE526I	ACGT	2 cut(s)	372, 505
Hsp92II	CATG	7 cut(s)	227, 343, 411, 496, 514, 641, 667
HspAI	GCGC	2 cut(s)	658, 668
KspAI	GTTAAC	1 cut(s)	417
Kzo9I	GATC	2 cut(s)	269, 576
LmnI	GCTCC	3 cut(s)	106, 284, 487
Lsp1109I	GCAGC	1 cut(s)	693
LweI	GCATC	1 cut(s)	771
MaeII	ACGT	2 cut(s)	372, 505
MaeIII	GTNAC	4 cut(s)	113, 236, 368, 712
MalI	GATC	2 cut(s)	271, 578
MboI	GATC	2 cut(s)	269, 576
MboII	GAAGA	1 cut(s)	667
MhlI	GDGCHC	2 cut(s)	92, 191
MluCI	AATT	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	538
MnlI	CCTC	5 cut(s)	220, 547, 554, 656, 780
Mph1103I	ATGCAT	1 cut(s)	345
MseI	TTAA	4 cut(s)	9, 360, 375, 416
MslI	CAYNNNNRTG	1 cut(s)	410
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	191
Mva1269I	GAATGC	2 cut(s)	343, 464
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	4 cut(s)	174, 642, 706, 759
NciI	CCSGG	1 cut(s)	191
NdeI	CATATG	1 cut(s)	581
NdeII	GATC	2 cut(s)	269, 576
NlaIII	CATG	7 cut(s)	227, 343, 411, 496, 514, 641, 667
NlaIV	GGNNCC	4 cut(s)	89, 188, 483, 757
NmuCI	GTSAC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	345
NspI	RCATGY	1 cut(s)	343
PctI	GAATGC	2 cut(s)	343, 464
PfeI	GAWTC	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	1 cut(s)	708
PspN4I	GGNNCC	4 cut(s)	89, 188, 483, 757
PsrI	GAACNNNNNNTAC	2 cut(s)	527, 559
PstI	CTGCAG	1 cut(s)	33
RsaI	GTAC	2 cut(s)	355, 443
RsaNI	GTAC	2 cut(s)	354, 442
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	4 cut(s)	9, 360, 375, 416
SatI	GCNGC	1 cut(s)	707
Sau3AI	GATC	2 cut(s)	269, 576
ScaI	AGTACT	1 cut(s)	443
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	2 cut(s)	92, 191
SfaNI	GCATC	1 cut(s)	771
SfcI	CTRYAG	3 cut(s)	29, 544, 775
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	2 cut(s)	388, 753
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	257, 421
TaiI	ACGT	2 cut(s)	375, 508
TasI	AATT	1 cut(s)	18
TatI	WGTACW	2 cut(s)	353, 441
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	4 cut(s)	9, 360, 375, 416
Tru9I	TTAA	4 cut(s)	9, 360, 375, 416
TscAI	CASTG	3 cut(s)	38, 138, 434
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	1 cut(s)	706
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	2 cut(s)	499, 534
TspGWI	ACGGA	2 cut(s)	271, 736
TspRI	CASTG	3 cut(s)	38, 138, 434
Van91I	CCANNNNNTGG	1 cut(s)	334
XapI	RAATTY	1 cut(s)	18
XceI	RCATGY	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	100
ZrmI	AGTACT	1 cut(s)	443
Zsp2I	ATGCAT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.