Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000371.1

Orthogroup ID

OG0009759

Physical Location & Seq

Genomic Coordinates Forward (+)

43057 .. 45535

Gene Structure 2479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000371.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atggacccagaaaacatggagattgttccaccgtcggatttgatggacgacgacgacgagatccacggccgtcctcgccagttatttacagttccaaagcctcacaacaatggcaataacattccgggaaccaccagtgttcatgagcttcttgaatgccctgtttgcacaaattcaatgtaccctccaatccatcagtgccataacgggcataccctttgttccacctgtaaaacaagagtgcataatcggtgcccaacttgtagacaggagcttggtgacataaggtgtttagcactggagaaggtagctgaatcacttgaactgccttgcaagtactgctcgcttgggtgcccggagatattcccatattatagtaaactgaaacatgaggctgtctgtaacttcagaccgtacaactgtccttatgctggatcagactgctctgttgttggggatattccattccttgttgctcatctacgggatgaccacaaggtggacatgcattctggatgtacttttaaccatcgttacgttaagtctaatccccgcgaagtagaaaatgccacatggatgttaactgttttccactgctttggtcagtacttctgtctccattttgaagcattccagctcggtatggctcctgtttacatggcatttctacgtttcatgggggatgaaacagaagctcggaactacacctacagccttgaggttggaggaaatggccgaaagatcatatgggaaggaaatccaagaagcataagggatagccacaagaaggttagggacagccatgatggcctcataatacagcgcaacatggcacttttcttctctggtggggataggaaagagctgaagctgcgagttacaggacggatatggaaggaacagcagaacccagaaggcggtgcctgcatcatacctctctgtagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

315

Amino Acids

35.9

Weight (kDa)

6.46

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61790
fragaria_vesca	FvH4_7g16630
malus_domestica	MD01G1082000.v1.1 MD07G1150400.v1.1
prunus_persica	Prupe.2G189200_v2.0.a1 Prupe.2G189200_v2.0.a1
pyrus_communis	pycom01g10960 pycom07g14890
rosa_chinensis	RchiOBHm_Chr1g0359721 RchiOBHm_Chr1g0359801
rosa_laevigata	RLG00000027853
rosa_multiflora	Rmu_ssc0000371.1_g000007
rosa_roxburghii	Rroxscaffold_4G00296820
rosa_rugosa	Rorug01G0272800
rosa_samantha	Rh1AG286500 Rh1AG286600 Rh1BG252300 Rh1BG252500 Rh1CG269700 Rh1DG281500
rosa_wichuraiana	Rw1G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	252, 351, 920
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccI	GTMKAC	1 cut(s)	265
AccII	CGCG	1 cut(s)	555
AciI	CCGC	2 cut(s)	553, 918
AclWI	GGATC	2 cut(s)	55, 442
AcoI	YGGCCR	2 cut(s)	67, 733
AcsI	RAATTY	1 cut(s)	172
AcuI	CTGAAG	2 cut(s)	391, 887
AdeI	CACNNNGTG	1 cut(s)	499
AfaI	GTAC	5 cut(s)	182, 338, 416, 520, 608
AfiI	CCNNNNNNNGG	4 cut(s)	431, 499, 787, 917
AgsI	TTSAA	4 cut(s)	155, 177, 323, 626
AluBI	AGCT	7 cut(s)	148, 274, 311, 637, 695, 865, 871
AluI	AGCT	7 cut(s)	148, 274, 311, 637, 695, 865, 871
Alw26I	GTCTC	1 cut(s)	620
AlwI	GGATC	2 cut(s)	55, 442
AoxI	GGCC	3 cut(s)	67, 733, 808
ApeKI	GCWGC	1 cut(s)	871
ApoI	RAATTY	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	825
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	126, 356
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	2 cut(s)	257, 356
BanI	GGYRCC	3 cut(s)	252, 351, 920
BbvI	GCAGC	1 cut(s)	858
BccI	CCATC	4 cut(s)	37, 201, 537, 800
BceAI	ACGGC	2 cut(s)	54, 82
BcnI	CCSGG	2 cut(s)	126, 356
BcoDI	GTCTC	1 cut(s)	620
BfmI	CTRYAG	2 cut(s)	709, 940
BglI	GCCNNNNNGGC	1 cut(s)	807
BisI	GCNGC	1 cut(s)	872
BlsI	GCNGC	1 cut(s)	873
BmcAI	AGTACT	2 cut(s)	338, 608
Bme1390I	CCNGG	2 cut(s)	126, 356
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	6 cut(s)	6, 130, 254, 353, 648, 922
BmrFI	CCNGG	2 cut(s)	126, 356
BmsI	GCATC	1 cut(s)	936
BpmI	CTGGAG	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	737
BpuMI	CCSGG	2 cut(s)	126, 356
BsaJI	CCNNGG	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	4 cut(s)	431, 499, 787, 917
Bse1I	ACTGG	3 cut(s)	79, 135, 303
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	4 cut(s)	493, 521, 582, 688
BseLI	CCNNNNNNNGG	4 cut(s)	431, 499, 787, 917
BseNI	ACTGG	3 cut(s)	79, 135, 303
BseSI	GKGCMC	2 cut(s)	257, 356
BseX3I	CGGCCG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	858
Bsh1236I	CGCG	1 cut(s)	555
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	3 cut(s)	69, 735, 810
BshNI	GGYRCC	3 cut(s)	252, 351, 920
BsiEI	CGRYCG	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	125, 356
BslFI	GGGAC	1 cut(s)	809
BslI	CCNNNNNNNGG	4 cut(s)	431, 499, 787, 917
BsmAI	GTCTC	1 cut(s)	620
BsmFI	GGGAC	1 cut(s)	809
BsmI	GAATGC	3 cut(s)	161, 508, 629
BsnI	GGCC	3 cut(s)	69, 735, 810
Bsp1286I	GDGCHC	2 cut(s)	257, 356
Bsp143I	GATC	3 cut(s)	60, 434, 741
BspACI	CCGC	2 cut(s)	553, 918
BspANI	GGCC	3 cut(s)	69, 735, 810
BspFNI	CGCG	1 cut(s)	555
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	6 cut(s)	6, 130, 254, 353, 648, 922
BspPI	GGATC	2 cut(s)	55, 442
BspT107I	GGYRCC	3 cut(s)	252, 351, 920
BsrI	ACTGG	3 cut(s)	79, 135, 303
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	3 cut(s)	60, 434, 741
Bst4CI	ACNGT	5 cut(s)	33, 91, 414, 422, 586
BstAPI	GCANNNNNTGC	1 cut(s)	339
BstC8I	GCNNGC	2 cut(s)	344, 925
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	4 cut(s)	493, 521, 582, 688
BstFNI	CGCG	1 cut(s)	555
BstHHI	GCGC	1 cut(s)	825
BstKTI	GATC	3 cut(s)	63, 437, 744
BstMAI	GTCTC	1 cut(s)	620
BstMBI	GATC	3 cut(s)	60, 434, 741
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	6 cut(s)	75, 165, 339, 807, 871, 924
BstNSI	RCATGY	1 cut(s)	508
BstSCI	CCNGG	2 cut(s)	124, 354
BstSFI	CTRYAG	2 cut(s)	709, 940
BstSLI	GKGCMC	2 cut(s)	257, 356
BstUI	CGCG	1 cut(s)	555
BstV1I	GCAGC	1 cut(s)	858
BstX2I	RGATCY	1 cut(s)	60
BstXI	CCANNNNNNTGG	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	60
BstZI	CGGCCG	1 cut(s)	67
BsuRI	GGCC	3 cut(s)	69, 735, 810
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	4 cut(s)	493, 521, 582, 688
BtsI	GCAGTG	1 cut(s)	592
BtsIMutI	CAGTG	4 cut(s)	142, 203, 296, 592
Cac8I	GCNNGC	2 cut(s)	344, 925
CciI	TCATGA	1 cut(s)	142
CfoI	GCGC	1 cut(s)	825
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	5 cut(s)	181, 337, 415, 519, 607
CviAII	CATG	9 cut(s)	16, 143, 389, 505, 573, 658, 676, 803, 829
CviQI	GTAC	5 cut(s)	181, 337, 415, 519, 607
DpnI	GATC	3 cut(s)	62, 436, 743
DpnII	GATC	3 cut(s)	60, 434, 741
DraIII	CACNNNGTG	1 cut(s)	499
EaeI	YGGCCR	2 cut(s)	67, 733
EagI	CGGCCG	1 cut(s)	67
EclXI	CGGCCG	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	4
Eco52I	CGGCCG	1 cut(s)	67
Eco57I	CTGAAG	2 cut(s)	391, 887
EcoT22I	ATGCAT	1 cut(s)	510
FaeI	CATG	9 cut(s)	19, 146, 392, 508, 576, 661, 679, 806, 832
FaqI	GGGAC	1 cut(s)	809
FatI	CATG	9 cut(s)	15, 142, 388, 504, 572, 657, 675, 802, 828
FauI	CCCGC	1 cut(s)	560
FauNDI	CATATG	1 cut(s)	746
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	872
FokI	GGATG	4 cut(s)	500, 528, 589, 695
Fsp4HI	GCNGC	1 cut(s)	872
GlaI	GCGC	1 cut(s)	824
GluI	GCNGC	1 cut(s)	872
GsuI	CTGGAG	1 cut(s)	320
HaeIII	GGCC	3 cut(s)	69, 735, 810
HapII	CCGG	2 cut(s)	125, 356
HhaI	GCGC	1 cut(s)	825
Hin1II	CATG	9 cut(s)	19, 146, 392, 508, 576, 661, 679, 806, 832
Hin6I	GCGC	1 cut(s)	823
HinP1I	GCGC	1 cut(s)	823
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HinfI	GANTC	1 cut(s)	314
HpaI	GTTAAC	1 cut(s)	582
HpaII	CCGG	2 cut(s)	125, 356
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	5 cut(s)	266, 380, 502, 582, 655
Hpy188I	TCNGA	4 cut(s)	37, 410, 439, 699
Hpy188III	TCNNGA	3 cut(s)	143, 152, 513
Hpy8I	GTNNAC	5 cut(s)	266, 380, 502, 582, 655
Hpy99I	CGWCG	4 cut(s)	37, 53, 56, 59
HpyAV	CCTTC	5 cut(s)	298, 746, 781, 889, 908
HpyCH4III	ACNGT	5 cut(s)	33, 91, 414, 422, 586
HpyCH4IV	ACGT	2 cut(s)	537, 670
HpyCH4V	TGCA	5 cut(s)	168, 244, 333, 508, 927
HpyF10VI	GCNNNNNNNGC	6 cut(s)	75, 165, 339, 807, 871, 924
HpySE526I	ACGT	2 cut(s)	537, 670
Hsp92II	CATG	9 cut(s)	19, 146, 392, 508, 576, 661, 679, 806, 832
HspAI	GCGC	1 cut(s)	823
KspAI	GTTAAC	1 cut(s)	582
Kzo9I	GATC	3 cut(s)	60, 434, 741
LmnI	GCTCC	2 cut(s)	271, 652
Lsp1109I	GCAGC	1 cut(s)	858
LweI	GCATC	1 cut(s)	936
MaeII	ACGT	2 cut(s)	537, 670
MaeIII	GTNAC	4 cut(s)	278, 401, 533, 877
MalI	GATC	3 cut(s)	62, 436, 743
MboI	GATC	3 cut(s)	60, 434, 741
MboII	GAAGA	1 cut(s)	832
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	2 cut(s)	257, 356
MluCI	AATT	1 cut(s)	172
MmeI	TCCRAC	2 cut(s)	15, 703
MnlI	CCTC	8 cut(s)	84, 111, 195, 385, 712, 719, 821, 945
Mph1103I	ATGCAT	1 cut(s)	510
MseI	TTAA	3 cut(s)	525, 540, 581
MslI	CAYNNNNRTG	2 cut(s)	108, 575
MspI	CCGG	2 cut(s)	125, 356
MspR9I	CCNGG	2 cut(s)	126, 356
Mva1269I	GAATGC	3 cut(s)	161, 508, 629
MvnI	CGCG	1 cut(s)	555
MwoI	GCNNNNNNNGC	6 cut(s)	75, 165, 339, 807, 871, 924
NciI	CCSGG	2 cut(s)	126, 356
NdeI	CATATG	1 cut(s)	746
NdeII	GATC	3 cut(s)	60, 434, 741
NlaIII	CATG	9 cut(s)	19, 146, 392, 508, 576, 661, 679, 806, 832
NlaIV	GGNNCC	6 cut(s)	6, 130, 254, 353, 648, 922
NmuCI	GTSAC	1 cut(s)	278
NsiI	ATGCAT	1 cut(s)	510
NspI	RCATGY	1 cut(s)	508
PagI	TCATGA	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	3 cut(s)	161, 508, 629
PfeI	GAWTC	1 cut(s)	314
PflMI	CCANNNNNTGG	1 cut(s)	499
PfoI	TCCNGGA	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	873
PspN4I	GGNNCC	6 cut(s)	6, 130, 254, 353, 648, 922
PspPI	GGNCC	1 cut(s)	4
PsrI	GAACNNNNNNTAC	2 cut(s)	692, 724
PsuI	RGATCY	1 cut(s)	60
RsaI	GTAC	5 cut(s)	182, 338, 416, 520, 608
RsaNI	GTAC	5 cut(s)	181, 337, 415, 519, 607
RseI	CAYNNNNRTG	2 cut(s)	108, 575
SaqAI	TTAA	3 cut(s)	525, 540, 581
SatI	GCNGC	1 cut(s)	872
Sau3AI	GATC	3 cut(s)	60, 434, 741
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	2 cut(s)	338, 608
ScrFI	CCNGG	2 cut(s)	126, 356
SduI	GDGCHC	2 cut(s)	257, 356
SfaNI	GCATC	1 cut(s)	936
SfcI	CTRYAG	2 cut(s)	709, 940
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	108, 575
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	2 cut(s)	553, 918
StyD4I	CCNGG	2 cut(s)	124, 354
TaaI	ACNGT	5 cut(s)	33, 91, 414, 422, 586
TaiI	ACGT	2 cut(s)	540, 673
TasI	AATT	1 cut(s)	172
TatI	WGTACW	3 cut(s)	336, 518, 606
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	3 cut(s)	525, 540, 581
Tru9I	TTAA	3 cut(s)	525, 540, 581
TscAI	CASTG	4 cut(s)	142, 203, 303, 599
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	1 cut(s)	871
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	3 cut(s)	131, 664, 699
TspGWI	ACGGA	1 cut(s)	901
TspRI	CASTG	4 cut(s)	142, 203, 303, 599
Van91I	CCANNNNNTGG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	1 cut(s)	508
XmiI	GTMKAC	1 cut(s)	265
ZrmI	AGTACT	2 cut(s)	338, 608
Zsp2I	ATGCAT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.