Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009759

Physical Location & Seq

Genomic Coordinates Reverse (-)

22871697 .. 22873833

Gene Structure 2137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGATTTGGATAGCATGGACTGTACATCAACCATGGATGTGACAGATGATGAAGAGATCCACCAAGATCGCCATTCCTACGCTTCTGTTTCCAAGCATCATCATACTAATAACAACACCACCAACGTTAATGCTGCTGCTTCTGGGCTTCTCCCTACCACCACCAGTGTTCATGAGCTTCTCGAATGTCCTGTCTGCACCAATTCTATGTACCCTCCCATTCATCAGTGTCACAATGGACATACGTTGTGTTCAACCTGTAAAGCCAGGGTTCACAACCGCTGCCCAACTTGTAGACAAGAGCTCGGTGATATCCGTTGTTTGGCACTGGAAAAAGTAGCCGAATCACTTGAACTACCTTGTAAACACATGTCACTTGGATGTCCTGAAATCTTCCCTTATTACAGTAAGCTCAAACATGAGACTGTATGTAACTTCAGACCTTATAGCTGCCCTTATGCTGGATCCGAGTGTTCTGTTACGGGCGATATCCCTTTCTTAGTTGCTCATCTGAGGGATGATCATAAGGTGGATATGCATTCTGGGTGTACTTTCAACCATCGTTATGTCAAGTCTAATCCTCGTGAAGTCGAAAACGCCACATGGATGTTAACTGTCTTTCACTGCTTCGGTCAATACTTCTGTCTTCACTTTGAGGCATTCCAGCTCGGAATGGCTCCAGTCTACATGGCGTTCCTGCGTTTCATGGGGGACGAGACAGAAGCTCGAAACTACAATTACAGTTTAGAAGTGGGAGGTTATGGTCGGAAGCTGATATGGGAAGGAACACCAAGAAGCGTAAGAGACAGCCACAGGAAAGTTAGAGACAGTCATGATGGACTAATTATACAAAGAAACATGGCTCTCTTCTTCTCAGGTGGAGATAGGAAAGAGCTGAAACTTCGAGTCACTGGAAGGATATGGAAAGAGCAACAACAAAGTGGTGAAGGTGGAGGAGCTTGTATCCCAAACTTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

326

Amino Acids

36.95

Weight (kDa)

6.46

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	63 - 98	2.8e-13	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	112 - 187	2.4e-30	Sina, zinc finger
Sina_TRAF	PF03145	207 - 304	4.1e-34	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61790
fragaria_vesca	FvH4_7g16630
malus_domestica	MD01G1082000.v1.1 MD07G1150400.v1.1
prunus_persica	Prupe.2G189200_v2.0.a1 Prupe.2G189200_v2.0.a1
pyrus_communis	pycom01g10960 pycom07g14890
rosa_chinensis	RchiOBHm_Chr1g0359721 RchiOBHm_Chr1g0359801
rosa_laevigata	RLG00000027853
rosa_multiflora	Rmu_ssc0000371.1_g000007
rosa_roxburghii	Rroxscaffold_4G00296820
rosa_rugosa	Rorug01G0272800
rosa_samantha	Rh1AG286500 Rh1AG286600 Rh1BG252300 Rh1BG252500 Rh1CG269700 Rh1DG281500
rosa_wichuraiana	Rw1G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	295, 684
AciI	CCGC	1 cut(s)	280
AclI	AACGTT	1 cut(s)	126
AclWI	GGATC	3 cut(s)	52, 459, 472
AcuI	CTGAAG	1 cut(s)	421
AfaI	GTAC	3 cut(s)	25, 212, 550
AfiI	CCNNNNNNNGG	2 cut(s)	322, 461
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	3 cut(s)	255, 353, 556
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	9 cut(s)	178, 304, 412, 450, 667, 725, 772, 895, 959
AluI	AGCT	9 cut(s)	178, 304, 412, 450, 667, 725, 772, 895, 959
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	4 cut(s)	416, 710, 798, 819
AlwI	GGATC	3 cut(s)	52, 459, 472
ApeKI	GCWGC	4 cut(s)	134, 137, 282, 450
ArsI	GACNNNNNNTTYG	2 cut(s)	177, 209
AsuHPI	GGTGA	2 cut(s)	320, 956
BamHI	GGATCC	1 cut(s)	464
BanII	GRGCYC	1 cut(s)	306
BauI	CACGAG	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	638
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	4 cut(s)	121, 124, 269, 437
BccI	CCATC	2 cut(s)	567, 830
BciT130I	CCWGG	1 cut(s)	268
BciVI	GTATCC	1 cut(s)	974
BclI	TGATCA	1 cut(s)	520
BcoDI	GTCTC	4 cut(s)	416, 710, 798, 819
BfuI	GTATCC	1 cut(s)	974
BisI	GCNGC	4 cut(s)	135, 138, 283, 451
BlsI	GCNGC	4 cut(s)	136, 139, 284, 452
Bme1390I	CCNGG	1 cut(s)	268
BmiI	GGNNCC	2 cut(s)	466, 678
BmrFI	CCNGG	1 cut(s)	268
BmsI	GCATC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	638
BpmI	CTGGAG	1 cut(s)	663
BsaJI	CCNNGG	2 cut(s)	33, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	322, 461
Bse1I	ACTGG	4 cut(s)	165, 333, 680, 916
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	2 cut(s)	33, 267
BseGI	GGATG	4 cut(s)	43, 386, 523, 612
BseLI	CCNNNNNNNGG	2 cut(s)	322, 461
BseMII	CTCAG	2 cut(s)	503, 888
BseNI	ACTGG	4 cut(s)	165, 333, 680, 916
BseRI	GAGGAG	1 cut(s)	969
BseXI	GCAGC	4 cut(s)	121, 124, 269, 437
BsgI	GTGCAG	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	725
BslI	CCNNNNNNNGG	2 cut(s)	322, 461
BsmAI	GTCTC	4 cut(s)	416, 710, 798, 819
BsmFI	GGGAC	1 cut(s)	725
BsmI	GAATGC	2 cut(s)	538, 659
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp1407I	TGTACA	1 cut(s)	23
Bsp143I	GATC	4 cut(s)	57, 67, 464, 520
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	1 cut(s)	280
BspCNI	CTCAG	2 cut(s)	504, 887
BspHI	TCATGA	2 cut(s)	172, 832
BspLI	GGNNCC	2 cut(s)	466, 678
BspPI	GGATC	3 cut(s)	52, 459, 472
BsrGI	TGTACA	1 cut(s)	23
BsrI	ACTGG	4 cut(s)	165, 333, 680, 916
BssECI	CCNNGG	2 cut(s)	33, 267
BssMI	GATC	4 cut(s)	57, 67, 464, 520
BssSI	CACGAG	1 cut(s)	582
BssT1I	CCWWGG	1 cut(s)	33
Bst2BI	CACGAG	1 cut(s)	582
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	6 cut(s)	23, 407, 427, 616, 743, 830
Bst6I	CTCTTC	2 cut(s)	48, 872
BstAUI	TGTACA	1 cut(s)	23
BstDEI	CTNAG	3 cut(s)	499, 512, 874
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	4 cut(s)	43, 386, 523, 612
BstKTI	GATC	4 cut(s)	60, 70, 467, 523
BstMAI	GTCTC	4 cut(s)	416, 710, 798, 819
BstMBI	GATC	4 cut(s)	57, 67, 464, 520
BstNI	CCWGG	1 cut(s)	268
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	266
BstV1I	GCAGC	4 cut(s)	121, 124, 269, 437
BstV2I	GAAGAC	1 cut(s)	638
BstX2I	RGATCY	2 cut(s)	57, 464
BstYI	RGATCY	2 cut(s)	57, 464
BsuI	GTATCC	1 cut(s)	974
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	4 cut(s)	43, 386, 523, 612
BtsI	GCAGTG	1 cut(s)	622
BtsIMutI	CAGTG	5 cut(s)	172, 233, 326, 622, 909
CciI	TCATGA	2 cut(s)	172, 832
Csp6I	GTAC	3 cut(s)	24, 211, 549
CviQI	GTAC	3 cut(s)	24, 211, 549
DdeI	CTNAG	3 cut(s)	499, 512, 874
DpnI	GATC	4 cut(s)	59, 69, 466, 522
DpnII	GATC	4 cut(s)	57, 67, 464, 520
Eam1104I	CTCTTC	2 cut(s)	48, 872
EarI	CTCTTC	2 cut(s)	48, 872
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	306
Eco32I	GATATC	2 cut(s)	313, 490
Eco53kI	GAGCTC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	421
EcoICRI	GAGCTC	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	266
EcoRV	GATATC	2 cut(s)	313, 490
EcoT14I	CCWWGG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	540
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	33
FaqI	GGGAC	1 cut(s)	725
FbaI	TGATCA	1 cut(s)	520
FblI	GTMKAC	2 cut(s)	295, 684
Fnu4HI	GCNGC	4 cut(s)	135, 138, 283, 451
FokI	GGATG	4 cut(s)	50, 393, 530, 619
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	4 cut(s)	135, 138, 283, 451
GluI	GCNGC	4 cut(s)	135, 138, 283, 451
GsuI	CTGGAG	1 cut(s)	663
HincII	GTYRAC	1 cut(s)	612
HindII	GTYRAC	1 cut(s)	612
HinfI	GANTC	2 cut(s)	344, 906
HpaI	GTTAAC	1 cut(s)	612
HphI	GGTGA	2 cut(s)	320, 956
Hpy166II	GTNNAC	6 cut(s)	274, 296, 365, 549, 612, 685
Hpy188I	TCNGA	5 cut(s)	440, 469, 513, 671, 768
Hpy188III	TCNNGA	6 cut(s)	173, 182, 386, 584, 833, 978
Hpy8I	GTNNAC	6 cut(s)	274, 296, 365, 549, 612, 685
HpyAV	CCTTC	3 cut(s)	776, 909, 941
HpyCH4III	ACNGT	6 cut(s)	23, 407, 427, 616, 743, 830
HpyCH4IV	ACGT	2 cut(s)	126, 245
HpyCH4V	TGCA	2 cut(s)	198, 538
HpyF3I	CTNAG	3 cut(s)	499, 512, 874
HpySE526I	ACGT	2 cut(s)	126, 245
Ksp22I	TGATCA	1 cut(s)	520
KspAI	GTTAAC	1 cut(s)	612
Kzo9I	GATC	4 cut(s)	57, 67, 464, 520
LmnI	GCTCC	2 cut(s)	682, 956
Lsp1109I	GCAGC	4 cut(s)	121, 124, 269, 437
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	2 cut(s)	126, 245
MaeIII	GTNAC	6 cut(s)	40, 230, 372, 431, 478, 907
MalI	GATC	4 cut(s)	59, 69, 466, 522
MboI	GATC	4 cut(s)	57, 67, 464, 520
MboII	GAAGA	5 cut(s)	65, 385, 638, 859, 862
MflI	RGATCY	2 cut(s)	57, 464
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	3 cut(s)	202, 736, 843
MlyI	GAGTC	1 cut(s)	915
MmeI	TCCRAC	1 cut(s)	746
MnlI	CCTC	6 cut(s)	225, 507, 591, 649, 749, 947
Mph1103I	ATGCAT	1 cut(s)	540
MseI	TTAA	2 cut(s)	129, 611
MslI	CAYNNNNRTG	4 cut(s)	38, 379, 564, 605
MspA1I	CMGCKG	1 cut(s)	282
MspR9I	CCNGG	1 cut(s)	268
Mva1269I	GAATGC	2 cut(s)	538, 659
MvaI	CCWGG	1 cut(s)	268
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	4 cut(s)	57, 67, 464, 520
NlaIV	GGNNCC	2 cut(s)	466, 678
NmuCI	GTSAC	4 cut(s)	40, 230, 372, 907
NsiI	ATGCAT	1 cut(s)	540
NspI	RCATGY	1 cut(s)	373
PagI	TCATGA	2 cut(s)	172, 832
PciI	ACATGT	1 cut(s)	369
PctI	GAATGC	2 cut(s)	538, 659
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	4 cut(s)	136, 139, 284, 452
PleI	GAGTC	1 cut(s)	914
PpsI	GAGTC	1 cut(s)	914
PscI	ACATGT	1 cut(s)	369
Psp124BI	GAGCTC	1 cut(s)	306
Psp1406I	AACGTT	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	2 cut(s)	466, 678
PsuI	RGATCY	2 cut(s)	57, 464
RsaI	GTAC	3 cut(s)	25, 212, 550
RsaNI	GTAC	3 cut(s)	24, 211, 549
RseI	CAYNNNNRTG	4 cut(s)	38, 379, 564, 605
SacI	GAGCTC	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	129, 611
SatI	GCNGC	4 cut(s)	135, 138, 283, 451
Sau3AI	GATC	4 cut(s)	57, 67, 464, 520
SchI	GAGTC	1 cut(s)	915
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	306
SfaNI	GCATC	1 cut(s)	106
SmiMI	CAYNNNNRTG	4 cut(s)	38, 379, 564, 605
Sse9I	AATT	3 cut(s)	202, 736, 843
SsiI	CCGC	1 cut(s)	280
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	266
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	6 cut(s)	23, 407, 427, 616, 743, 830
TaiI	ACGT	2 cut(s)	129, 248
TaqI	TCGA	4 cut(s)	183, 591, 727, 904
TaqII	GACCGA	1 cut(s)	620
TasI	AATT	3 cut(s)	202, 736, 843
TatI	WGTACW	2 cut(s)	23, 548
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	2 cut(s)	129, 611
Tru9I	TTAA	2 cut(s)	129, 611
TscAI	CASTG	5 cut(s)	172, 233, 333, 629, 916
TseFI	GTSAC	4 cut(s)	40, 230, 372, 907
TseI	GCWGC	4 cut(s)	134, 137, 282, 450
Tsp45I	GTSAC	4 cut(s)	40, 230, 372, 907
TspDTI	ATGAA	4 cut(s)	66, 161, 212, 694
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	5 cut(s)	172, 233, 333, 629, 916
XceI	RCATGY	1 cut(s)	373
XmiI	GTMKAC	2 cut(s)	295, 684
Zsp2I	ATGCAT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.