Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009759

Physical Location & Seq

Genomic Coordinates Reverse (-)

22896732 .. 22900566

Gene Structure 3835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G189200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGAATCAGATGGCATTGAAAGTGTGACATCTTTGGATATGATGGACGAGGATGAGATCCATGGCCGTCCTCACCACTTTGTTTCAGTTCCAAAACCTCACAACAATAGCATTAACATTCCCGGCACCACCAGTGTCCATGAACTTCTTGAATGCCCTGTTTGCACCAATTCAATGTACCCTCCAATCCATCAGTGTCACAATGGGCATACCCTTTGCTCCACCTGTAAAACAAGGGTCCATAACCGGTGCCCAACTTGTAGACAAGAGCTTGGTGACATAAGGTGCCTAGCACTGGAAAAGGTTGCTGAATCTCTTGAACTGCCTTGCAAGTACTGCTCTCTTGGGTGCCCAGAGATCTTCCCCTATTACAGTAAACTTAAACACGAGGCTGTCTGCAACTTCAGGCCATACAACTGTCCATATGCTGGATCCGATTGCTCTGCTGTTGGGGATATTCCATTCCTTGTTACTCATCTACGGGATGATCACAAAGTGGACATGCATTCCGGATGCACTTTTAACCATCGTTATGTCAAGTCTAATCCTCGTGAAGTAGAAAATGCCACGTGGATGTTAACTGTCTTCCACTGTTTTGGTCAATACTTTTGTCTCCATTTTGAAGCATTCCAGCTTGGTATGGGTCCTGTTTACATGGCATTTCTCCGGTTCATGGGTGATGAAACAGAAGCTCGGAACTACACCTACAGCCTGGAGGTTGGAGGAAATGGCCGAAAGCTCATTTGGGAGGGCAATCCAAGAAGCATAAGGGATAGCCACAAGAAGGTTAGAGACAGCCATGATGGCCTCATAATACAGCGCAACATGGCACTTTTCTTCTCTGGAGGGGATAGGAAAGAGCTGAAGCTGCGAGTCACAGGACGGATATGGAAGGAACAGCAGAACCCAGAAGGGGCTAAAGTTTGTGAAGTACCACGTATCATTTGTGGTTTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

320

Amino Acids

36.34

Weight (kDa)

6.64

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61790
fragaria_vesca	FvH4_7g16630
malus_domestica	MD01G1082000.v1.1 MD07G1150400.v1.1
prunus_persica	Prupe.2G189200_v2.0.a1 Prupe.2G189200_v2.0.a1
pyrus_communis	pycom01g10960 pycom07g14890
rosa_chinensis	RchiOBHm_Chr1g0359721 RchiOBHm_Chr1g0359801
rosa_laevigata	RLG00000027853
rosa_multiflora	Rmu_ssc0000371.1_g000007
rosa_roxburghii	Rroxscaffold_4G00296820
rosa_rugosa	Rorug01G0272800
rosa_samantha	Rh1AG286500 Rh1AG286600 Rh1BG252300 Rh1BG252500 Rh1CG269700 Rh1DG281500
rosa_wichuraiana	Rw1G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	125, 249, 285, 348
AccB7I	CCANNNNNTGG	1 cut(s)	428
AccI	GTMKAC	1 cut(s)	262
AccIII	TCCGGA	1 cut(s)	509
AclWI	GGATC	3 cut(s)	52, 426, 439
AcoI	YGGCCR	2 cut(s)	64, 730
AcuI	CTGAAG	2 cut(s)	388, 884
AcvI	CACGTG	1 cut(s)	570
AdeI	CACNNNGTG	1 cut(s)	496
AfaI	GTAC	3 cut(s)	179, 335, 933
AfiI	CCNNNNNNNGG	5 cut(s)	295, 428, 673, 784, 913
AgeI	ACCGGT	1 cut(s)	246
AgsI	TTSAA	5 cut(s)	20, 152, 174, 320, 623
AjnI	CCWGG	1 cut(s)	711
AjuI	GAANNNNNNNTTGG	2 cut(s)	727, 759
AluBI	AGCT	6 cut(s)	271, 634, 692, 739, 862, 868
AluI	AGCT	6 cut(s)	271, 634, 692, 739, 862, 868
Alw26I	GTCTC	2 cut(s)	617, 786
AlwI	GGATC	3 cut(s)	52, 426, 439
Aor13HI	TCCGGA	1 cut(s)	509
AoxI	GGCC	4 cut(s)	64, 407, 730, 805
ApeKI	GCWGC	1 cut(s)	868
AsiGI	ACCGGT	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	822
AspS9I	GGNCC	2 cut(s)	238, 644
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	3 cut(s)	65, 287, 689
AvaII	GGWCC	2 cut(s)	238, 644
BaeGI	GKGCMC	2 cut(s)	254, 353
BamHI	GGATCC	1 cut(s)	431
BanI	GGYRCC	4 cut(s)	125, 249, 285, 348
BauI	CACGAG	2 cut(s)	386, 549
BbrPI	CACGTG	1 cut(s)	570
BbsI	GAAGAC	1 cut(s)	577
BbvI	GCAGC	1 cut(s)	855
BccI	CCATC	5 cut(s)	5, 37, 198, 534, 797
BceAI	ACGGC	1 cut(s)	51
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BciT130I	CCWGG	1 cut(s)	713
BclI	TGATCA	1 cut(s)	487
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	617, 786
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	706
BglI	GCCNNNNNGGC	1 cut(s)	804
BglII	AGATCT	1 cut(s)	357
BisI	GCNGC	1 cut(s)	869
BlsI	GCNGC	1 cut(s)	870
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	2 cut(s)	123, 713
Bme18I	GGWCC	2 cut(s)	238, 644
BmgT120I	GGNCC	2 cut(s)	238, 644
BmiI	GGNNCC	7 cut(s)	127, 239, 251, 287, 350, 433, 645
BmrFI	CCNGG	2 cut(s)	123, 713
BmsI	GCATC	1 cut(s)	503
BpiI	GAAGAC	1 cut(s)	577
BpmI	CTGGAG	2 cut(s)	734, 864
BpuMI	CCSGG	1 cut(s)	123
BsaAI	YACGTR	2 cut(s)	570, 938
BsaJI	CCNNGG	1 cut(s)	61
BsaWI	WCCGGW	3 cut(s)	246, 509, 666
Bsc4I	CCNNNNNNNGG	5 cut(s)	295, 428, 673, 784, 913
Bse118I	RCCGGY	1 cut(s)	246
Bse1I	ACTGG	2 cut(s)	132, 300
BseAI	TCCGGA	1 cut(s)	509
BseBI	CCWGG	1 cut(s)	713
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	4 cut(s)	58, 490, 518, 579
BseLI	CCNNNNNNNGG	5 cut(s)	295, 428, 673, 784, 913
BseNI	ACTGG	2 cut(s)	132, 300
BseSI	GKGCMC	2 cut(s)	254, 353
BseXI	GCAGC	1 cut(s)	855
BshFI	GGCC	4 cut(s)	66, 409, 732, 807
BshNI	GGYRCC	4 cut(s)	125, 249, 285, 348
BshTI	ACCGGT	1 cut(s)	246
BsiSI	CCGG	4 cut(s)	123, 247, 510, 667
BslI	CCNNNNNNNGG	5 cut(s)	295, 428, 673, 784, 913
BsmAI	GTCTC	2 cut(s)	617, 786
BsmI	GAATGC	3 cut(s)	158, 505, 626
BsnI	GGCC	4 cut(s)	66, 409, 732, 807
Bsp1286I	GDGCHC	2 cut(s)	254, 353
Bsp13I	TCCGGA	1 cut(s)	509
Bsp143I	GATC	4 cut(s)	57, 357, 431, 487
Bsp19I	CCATGG	1 cut(s)	61
BspANI	GGCC	4 cut(s)	66, 409, 732, 807
BspEI	TCCGGA	1 cut(s)	509
BspLI	GGNNCC	7 cut(s)	127, 239, 251, 287, 350, 433, 645
BspPI	GGATC	3 cut(s)	52, 426, 439
BspT107I	GGYRCC	4 cut(s)	125, 249, 285, 348
BsrFI	RCCGGY	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	132, 300
BssAI	RCCGGY	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	4 cut(s)	57, 357, 431, 487
BssSI	CACGAG	2 cut(s)	386, 549
BssT1I	CCWWGG	1 cut(s)	61
Bst2BI	CACGAG	2 cut(s)	386, 549
Bst2UI	CCWGG	1 cut(s)	713
Bst4CI	ACNGT	4 cut(s)	374, 419, 583, 593
BstAPI	GCANNNNNTGC	1 cut(s)	336
BstBAI	YACGTR	2 cut(s)	570, 938
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	4 cut(s)	58, 490, 518, 579
BstHHI	GCGC	1 cut(s)	822
BstKTI	GATC	4 cut(s)	60, 360, 434, 490
BstMAI	GTCTC	2 cut(s)	617, 786
BstMBI	GATC	4 cut(s)	57, 357, 431, 487
BstMWI	GCNNNNNNNGC	4 cut(s)	162, 336, 804, 868
BstNI	CCWGG	1 cut(s)	713
BstNSI	RCATGY	1 cut(s)	505
BstSCI	CCNGG	2 cut(s)	121, 711
BstSFI	CTRYAG	1 cut(s)	706
BstSLI	GKGCMC	2 cut(s)	254, 353
BstV1I	GCAGC	1 cut(s)	855
BstV2I	GAAGAC	1 cut(s)	577
BstX2I	RGATCY	3 cut(s)	57, 357, 431
BstXI	CCANNNNNNTGG	1 cut(s)	596
BstYI	RGATCY	3 cut(s)	57, 357, 431
BsuRI	GGCC	4 cut(s)	66, 409, 732, 807
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	4 cut(s)	58, 490, 518, 579
BtsIMutI	CAGTG	4 cut(s)	139, 200, 293, 589
CfoI	GCGC	1 cut(s)	822
Cfr10I	RCCGGY	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	238, 644
Csp6I	GTAC	3 cut(s)	178, 334, 932
CspAI	ACCGGT	1 cut(s)	246
CviAII	CATG	7 cut(s)	62, 140, 502, 655, 673, 800, 826
CviQI	GTAC	3 cut(s)	178, 334, 932
DpnI	GATC	4 cut(s)	59, 359, 433, 489
DpnII	GATC	4 cut(s)	57, 357, 431, 487
DraI	TTTAAA	1 cut(s)	954
DraIII	CACNNNGTG	1 cut(s)	496
EaeI	YGGCCR	2 cut(s)	64, 730
Eco130I	CCWWGG	1 cut(s)	61
Eco47I	GGWCC	2 cut(s)	238, 644
Eco57I	CTGAAG	2 cut(s)	388, 884
Eco72I	CACGTG	1 cut(s)	570
EcoO109I	RGGNCCY	1 cut(s)	644
EcoRII	CCWGG	1 cut(s)	711
EcoT14I	CCWWGG	1 cut(s)	61
EcoT22I	ATGCAT	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	7 cut(s)	65, 143, 505, 658, 676, 803, 829
FatI	CATG	7 cut(s)	61, 139, 501, 654, 672, 799, 825
FauNDI	CATATG	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	487
FblI	GTMKAC	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	869
FokI	GGATG	4 cut(s)	65, 497, 525, 586
Fsp4HI	GCNGC	1 cut(s)	869
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	821
GluI	GCNGC	1 cut(s)	869
GsuI	CTGGAG	2 cut(s)	734, 864
HaeIII	GGCC	4 cut(s)	66, 409, 732, 807
HapII	CCGG	4 cut(s)	123, 247, 510, 667
HhaI	GCGC	1 cut(s)	822
Hin1II	CATG	7 cut(s)	65, 143, 505, 658, 676, 803, 829
Hin6I	GCGC	1 cut(s)	820
HinP1I	GCGC	1 cut(s)	820
HincII	GTYRAC	1 cut(s)	579
HindII	GTYRAC	1 cut(s)	579
HinfI	GANTC	3 cut(s)	5, 311, 873
HpaI	GTTAAC	1 cut(s)	579
HpaII	CCGG	4 cut(s)	123, 247, 510, 667
HphI	GGTGA	3 cut(s)	65, 287, 689
Hpy166II	GTNNAC	5 cut(s)	263, 377, 499, 579, 652
Hpy188I	TCNGA	3 cut(s)	10, 436, 696
Hpy188III	TCNNGA	5 cut(s)	149, 317, 510, 551, 843
Hpy8I	GTNNAC	5 cut(s)	263, 377, 499, 579, 652
HpyAV	CCTTC	3 cut(s)	778, 886, 905
HpyCH4III	ACNGT	4 cut(s)	374, 419, 583, 593
HpyCH4IV	ACGT	2 cut(s)	569, 937
HpyCH4V	TGCA	5 cut(s)	165, 330, 399, 505, 516
HpyF10VI	GCNNNNNNNGC	4 cut(s)	162, 336, 804, 868
HpySE526I	ACGT	2 cut(s)	569, 937
Hsp92II	CATG	7 cut(s)	65, 143, 505, 658, 676, 803, 829
HspAI	GCGC	1 cut(s)	820
Kpn2I	TCCGGA	1 cut(s)	509
Ksp22I	TGATCA	1 cut(s)	487
KspAI	GTTAAC	1 cut(s)	579
Kzo9I	GATC	4 cut(s)	57, 357, 431, 487
LmnI	GCTCC	1 cut(s)	224
Lsp1109I	GCAGC	1 cut(s)	855
LweI	GCATC	1 cut(s)	503
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	2 cut(s)	569, 937
MaeIII	GTNAC	5 cut(s)	25, 197, 275, 469, 874
MalI	GATC	4 cut(s)	59, 359, 433, 489
MboI	GATC	4 cut(s)	57, 357, 431, 487
MboII	GAAGA	3 cut(s)	352, 577, 829
MflI	RGATCY	3 cut(s)	57, 357, 431
MhlI	GDGCHC	2 cut(s)	254, 353
MluCI	AATT	2 cut(s)	169, 955
MlyI	GAGTC	1 cut(s)	882
MmeI	TCCRAC	1 cut(s)	700
Mph1103I	ATGCAT	1 cut(s)	507
MroI	TCCGGA	1 cut(s)	509
MseI	TTAA	5 cut(s)	114, 381, 522, 578, 953
MslI	CAYNNNNRTG	2 cut(s)	531, 572
MspI	CCGG	4 cut(s)	123, 247, 510, 667
MspR9I	CCNGG	2 cut(s)	123, 713
Mva1269I	GAATGC	3 cut(s)	158, 505, 626
MvaI	CCWGG	1 cut(s)	713
MwoI	GCNNNNNNNGC	4 cut(s)	162, 336, 804, 868
NciI	CCSGG	1 cut(s)	123
NcoI	CCATGG	1 cut(s)	61
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	4 cut(s)	57, 357, 431, 487
NlaIII	CATG	7 cut(s)	65, 143, 505, 658, 676, 803, 829
NlaIV	GGNNCC	7 cut(s)	127, 239, 251, 287, 350, 433, 645
NmuCI	GTSAC	4 cut(s)	25, 197, 275, 874
NsiI	ATGCAT	1 cut(s)	507
NspI	RCATGY	1 cut(s)	505
PctI	GAATGC	3 cut(s)	158, 505, 626
PfeI	GAWTC	2 cut(s)	5, 311
PflMI	CCANNNNNTGG	1 cut(s)	428
PinAI	ACCGGT	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	870
PleI	GAGTC	1 cut(s)	881
PmaCI	CACGTG	1 cut(s)	570
PmlI	CACGTG	1 cut(s)	570
PpsI	GAGTC	1 cut(s)	881
Ppu21I	YACGTR	2 cut(s)	570, 938
PpuMI	RGGWCCY	1 cut(s)	644
Psp5II	RGGWCCY	1 cut(s)	644
Psp6I	CCWGG	1 cut(s)	711
PspCI	CACGTG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	711
PspN4I	GGNNCC	7 cut(s)	127, 239, 251, 287, 350, 433, 645
PspPI	GGNCC	2 cut(s)	238, 644
PspPPI	RGGWCCY	1 cut(s)	644
PsrI	GAACNNNNNNTAC	2 cut(s)	689, 721
PsuI	RGATCY	3 cut(s)	57, 357, 431
RsaI	GTAC	3 cut(s)	179, 335, 933
RsaNI	GTAC	3 cut(s)	178, 334, 932
RseI	CAYNNNNRTG	2 cut(s)	531, 572
SaqAI	TTAA	5 cut(s)	114, 381, 522, 578, 953
SatI	GCNGC	1 cut(s)	869
Sau3AI	GATC	4 cut(s)	57, 357, 431, 487
Sau96I	GGNCC	2 cut(s)	238, 644
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	1 cut(s)	882
ScrFI	CCNGG	2 cut(s)	123, 713
SduI	GDGCHC	2 cut(s)	254, 353
SfaNI	GCATC	1 cut(s)	503
SfcI	CTRYAG	1 cut(s)	706
SinI	GGWCC	2 cut(s)	238, 644
SmiMI	CAYNNNNRTG	2 cut(s)	531, 572
Sse9I	AATT	2 cut(s)	169, 955
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	121, 711
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	4 cut(s)	374, 419, 583, 593
TaiI	ACGT	2 cut(s)	572, 940
TasI	AATT	2 cut(s)	169, 955
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	2 cut(s)	5, 311
Tru1I	TTAA	5 cut(s)	114, 381, 522, 578, 953
Tru9I	TTAA	5 cut(s)	114, 381, 522, 578, 953
TscAI	CASTG	4 cut(s)	139, 200, 300, 596
TseFI	GTSAC	4 cut(s)	25, 197, 275, 874
TseI	GCWGC	1 cut(s)	868
Tsp45I	GTSAC	4 cut(s)	25, 197, 275, 874
TspDTI	ATGAA	3 cut(s)	156, 661, 696
TspGWI	ACGGA	1 cut(s)	898
TspRI	CASTG	4 cut(s)	139, 200, 300, 596
Van91I	CCANNNNNTGG	1 cut(s)	428
VpaK11BI	GGWCC	2 cut(s)	238, 644
XceI	RCATGY	1 cut(s)	505
XmiI	GTMKAC	1 cut(s)	262
XspI	CTAG	1 cut(s)	290
ZrmI	AGTACT	1 cut(s)	335
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.