FvH4_7g17290

cytochrome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011592
Physical Location & Seq
Forward (+)
14714130 .. 14716629
2500 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17290.t2

Sequence Viewer

Length: 405 bp
ATGGCTTCAGATTCTAAAGTCTATCACTTTGATGAGGTGGCACAGCACAAGTACAAGAAAGATTGCTGGATTATAGTCTCTGGAAAGGTTTATGATGTCACTCCTTTTCTGGAGGAACACCCTGGAGGTGATGAAGTCTTGTTGTTAGCAGCCGATAGAGATGCAACTGATGATTTCAATGATGTTGGCCACAGCGATGATGCAAAGGAGATGATGGCGAAGTACTACATAGGAGAGATTGACACATCCACAATACCAGAGCAACCAAGTTACAAGCTGCCTCCACAAGCAACAGCTCCTCAAGACCAATCTTCCGGATTTTTGGTAAAGCTTCTACAGTTTCTGCTGCCCTTGTTGATCCTGGGAGGTGCATTTGCCCTGCAATACTACAGTAAAAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyt-b5

Protein Analysis

135

Amino Acids

15.02

Weight (kDa)

4.81

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyt-b5 PF00173 11 - 80 7.8e-29 Cytochrome b5-like Heme/Steroid binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 314
AclWI GGATC 1 cut(s) 352
AcoI YGGCCR 1 cut(s) 187
AfaI GTAC 2 cut(s) 53, 224
AgsI TTSAA 1 cut(s) 178
AjnI CCWGG 2 cut(s) 121, 360
AluBI AGCT 3 cut(s) 277, 296, 331
AluI AGCT 3 cut(s) 277, 296, 331
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 1 cut(s) 352
AlwNI CAGNNNCTG 1 cut(s) 343
Aor13HI TCCGGA 1 cut(s) 314
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 3 cut(s) 149, 277, 346
AsuHPI GGTGA 1 cut(s) 140
BalI TGGCCA 1 cut(s) 189
BbvI GCAGC 3 cut(s) 161, 264, 333
BccI CCATC 1 cut(s) 208
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BciT130I CCWGG 2 cut(s) 123, 362
BcoDI GTCTC 1 cut(s) 82
BfmI CTRYAG 2 cut(s) 335, 388
BisI GCNGC 3 cut(s) 150, 278, 347
BlsI GCNGC 3 cut(s) 151, 279, 348
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 123, 362
BmrFI CCNGG 2 cut(s) 123, 362
BmsI GCATC 2 cut(s) 151, 190
BpmI CTGGAG 2 cut(s) 131, 144
BpuEI CTTGAG 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 121, 361
BsaWI WCCGGW 1 cut(s) 314
BseAI TCCGGA 1 cut(s) 314
BseBI CCWGG 2 cut(s) 123, 362
BseDI CCNNGG 2 cut(s) 121, 361
BseGI GGATG 1 cut(s) 245
BseRI GAGGAG 1 cut(s) 288
BseXI GCAGC 3 cut(s) 161, 264, 333
BshFI GGCC 1 cut(s) 189
BsiSI CCGG 1 cut(s) 315
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 1 cut(s) 189
Bsp13I TCCGGA 1 cut(s) 314
Bsp143I GATC 1 cut(s) 357
BspANI GGCC 1 cut(s) 189
BspEI TCCGGA 1 cut(s) 314
BspPI GGATC 1 cut(s) 352
BssECI CCNNGG 2 cut(s) 121, 361
BssMI GATC 1 cut(s) 357
Bst2UI CCWGG 2 cut(s) 123, 362
Bst4CI ACNGT 2 cut(s) 339, 392
BstF5I GGATG 1 cut(s) 245
BstKTI GATC 1 cut(s) 360
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 1 cut(s) 357
BstNI CCWGG 2 cut(s) 123, 362
BstSCI CCNGG 2 cut(s) 121, 360
BstSFI CTRYAG 2 cut(s) 335, 388
BstV1I GCAGC 3 cut(s) 161, 264, 333
BsuRI GGCC 1 cut(s) 189
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 245
CaiI CAGNNNCTG 1 cut(s) 343
Csp6I GTAC 2 cut(s) 52, 223
CviJI RGCY 6 cut(s) 5, 152, 189, 277, 296, 331
CviKI_1 RGCY 6 cut(s) 5, 152, 189, 277, 296, 331
CviQI GTAC 2 cut(s) 52, 223
DpnI GATC 1 cut(s) 359
DpnII GATC 1 cut(s) 357
EaeI YGGCCR 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 121, 360
FaiI YATR 3 cut(s) 74, 93, 230
Fnu4HI GCNGC 3 cut(s) 150, 278, 347
FokI GGATG 1 cut(s) 232
Fsp4HI GCNGC 3 cut(s) 150, 278, 347
GluI GCNGC 3 cut(s) 150, 278, 347
GsuI CTGGAG 2 cut(s) 131, 144
HaeIII GGCC 1 cut(s) 189
HapII CCGG 1 cut(s) 315
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 1 cut(s) 11
HpaII CCGG 1 cut(s) 315
HphI GGTGA 1 cut(s) 140
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 4 cut(s) 81, 110, 302, 315
HpyCH4III ACNGT 2 cut(s) 339, 392
HpyCH4V TGCA 4 cut(s) 164, 203, 371, 382
Kpn2I TCCGGA 1 cut(s) 314
Kzo9I GATC 1 cut(s) 357
LmnI GCTCC 1 cut(s) 301
Lsp1109I GCAGC 3 cut(s) 161, 264, 333
LweI GCATC 2 cut(s) 151, 190
MaeIII GTNAC 2 cut(s) 97, 269
MalI GATC 1 cut(s) 359
MboI GATC 1 cut(s) 357
MboII GAAGA 1 cut(s) 303
MlsI TGGCCA 1 cut(s) 189
MluNI TGGCCA 1 cut(s) 189
MnlI CCTC 6 cut(s) 28, 106, 119, 291, 309, 359
Mox20I TGGCCA 1 cut(s) 189
MroI TCCGGA 1 cut(s) 314
MscI TGGCCA 1 cut(s) 189
MslI CAYNNNNRTG 2 cut(s) 30, 195
Msp20I TGGCCA 1 cut(s) 189
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 2 cut(s) 123, 362
MvaI CCWGG 2 cut(s) 123, 362
NdeII GATC 1 cut(s) 357
NmuCI GTSAC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 3 cut(s) 151, 279, 348
Psp6I CCWGG 2 cut(s) 121, 360
PspGI CCWGG 2 cut(s) 121, 360
PstNI CAGNNNCTG 1 cut(s) 343
RsaI GTAC 2 cut(s) 53, 224
RsaNI GTAC 2 cut(s) 52, 223
RseI CAYNNNNRTG 2 cut(s) 30, 195
SatI GCNGC 3 cut(s) 150, 278, 347
Sau3AI GATC 1 cut(s) 357
ScaI AGTACT 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 123, 362
SetI ASST 7 cut(s) 39, 90, 130, 279, 298, 333, 370
SfaNI GCATC 2 cut(s) 151, 190
SfcI CTRYAG 2 cut(s) 335, 388
SmiMI CAYNNNNRTG 2 cut(s) 30, 195
SmlI CTYRAG 1 cut(s) 300
SmoI CTYRAG 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 121, 360
TaaI ACNGT 2 cut(s) 339, 392
TatI WGTACW 2 cut(s) 51, 222
TfiI GAWTC 1 cut(s) 11
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 3 cut(s) 149, 277, 346
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 147
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.