Rorug01G0281000

cytochrome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011592
Physical Location & Seq
Forward (+)
39417760 .. 39419898
2139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0281000.1

Sequence Viewer

Length: 408 bp
ATGGCGGCCACGGGATCCGAACCCGGATCCGACGCCGGCGAGCTGGACGAGTTGGAGTGCCAAGTTACCGAAATGGCGGTGAAGATTCAAGAGTACCGAGCCACTGTACCGGAGCAGCTCAAGAAGACCTTGCCTTTCATTATCGAAGCTCAGAGACCCGTTTTGGCTGATGGGTCGGAGCCTGGGACGTCCGGGGATCCGAATTCGGGACAGATTGCTTTTGATAAGGATGTGTTAGGGGATCAGACGTTTCAGAAGATAAATTTGCTTAGAGACAAAATCTCTCGTAATGTTGCTGCATTGCCGATTGTCTTGAAGAGGTTGAAGGAGTGTATGTCTAATATTGACAAACTGGATTCTCAAAACACATTCATACATCCTGCATTTAAACGGAAAAGGACTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyt-b5

Protein Analysis

135

Amino Acids

14.87

Weight (kDa)

5.47

Isoelectric Point (pI)

54.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 191
AciI CCGC 2 cut(s) 5, 77
AclWI GGATC 7 cut(s) 9, 21, 22, 34, 191, 204, 249
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 2 cut(s) 202, 262
AcyI GRCGYC 2 cut(s) 33, 188
AfaI GTAC 2 cut(s) 95, 108
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 3 cut(s) 89, 316, 325
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 4 cut(s) 43, 118, 149, 405
AluI AGCT 4 cut(s) 43, 118, 149, 405
Alw26I GTCTC 2 cut(s) 148, 267
AlwI GGATC 7 cut(s) 9, 21, 22, 34, 191, 204, 249
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 115, 296
ApoI RAATTY 2 cut(s) 202, 262
AsuC2I CCSGG 2 cut(s) 24, 193
AsuHPI GGTGA 1 cut(s) 91
BamHI GGATCC 3 cut(s) 14, 26, 196
BbsI GAAGAC 1 cut(s) 131
BbvI GCAGC 2 cut(s) 127, 283
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 183
BcnI CCSGG 2 cut(s) 24, 193
BcoDI GTCTC 2 cut(s) 148, 267
BfaI CTAG 2 cut(s) 402, 406
BisI GCNGC 3 cut(s) 6, 116, 297
BlsI GCNGC 3 cut(s) 7, 117, 298
Bme1390I CCNGG 3 cut(s) 24, 183, 193
BmiI GGNNCC 4 cut(s) 16, 28, 180, 198
BmrFI CCNGG 3 cut(s) 24, 183, 193
BpiI GAAGAC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 2 cut(s) 24, 193
BsaHI GRCGYC 2 cut(s) 33, 188
BsaI GGTCTC 1 cut(s) 148
BsaJI CCNNGG 3 cut(s) 9, 182, 192
BsaWI WCCGGW 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 357
Bse3DI GCAATG 1 cut(s) 299
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 3 cut(s) 9, 182, 192
BseGI GGATG 2 cut(s) 235, 376
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 1 cut(s) 299
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 357
BseXI GCAGC 2 cut(s) 127, 283
BshFI GGCC 1 cut(s) 8
BsiSI CCGG 4 cut(s) 24, 36, 110, 192
BslFI GGGAC 2 cut(s) 199, 222
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 2 cut(s) 148, 267
BsmFI GGGAC 2 cut(s) 199, 222
BsnI GGCC 1 cut(s) 8
Bso31I GGTCTC 1 cut(s) 148
Bsp143I GATC 4 cut(s) 14, 26, 196, 241
BspACI CCGC 2 cut(s) 5, 77
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 4 cut(s) 16, 28, 180, 198
BspPI GGATC 7 cut(s) 9, 21, 22, 34, 191, 204, 249
BspTNI GGTCTC 1 cut(s) 148
BsrDI GCAATG 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 1 cut(s) 357
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 3 cut(s) 9, 182, 192
BssMI GATC 4 cut(s) 14, 26, 196, 241
BssNI GRCGYC 2 cut(s) 33, 188
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 311
BstACI GRCGYC 2 cut(s) 33, 188
BstC8I GCNNGC 2 cut(s) 37, 41
BstDEI CTNAG 2 cut(s) 150, 269
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 2 cut(s) 235, 376
BstKTI GATC 4 cut(s) 17, 29, 199, 244
BstMAI GTCTC 2 cut(s) 148, 267
BstMBI GATC 4 cut(s) 14, 26, 196, 241
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 3 cut(s) 22, 181, 191
BstV1I GCAGC 2 cut(s) 127, 283
BstV2I GAAGAC 1 cut(s) 131
BstX2I RGATCY 3 cut(s) 14, 26, 196
BstYI RGATCY 3 cut(s) 14, 26, 196
BsuRI GGCC 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 2 cut(s) 235, 376
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 2 cut(s) 37, 41
Cfr10I RCCGGY 1 cut(s) 35
CseI GACGC 1 cut(s) 41
Csp6I GTAC 2 cut(s) 94, 107
CviJI RGCY 8 cut(s) 8, 43, 101, 118, 149, 167, 181, 405
CviKI_1 RGCY 8 cut(s) 8, 43, 101, 118, 149, 167, 181, 405
CviQI GTAC 2 cut(s) 94, 107
DdeI CTNAG 2 cut(s) 150, 269
DpnI GATC 4 cut(s) 16, 28, 198, 243
DpnII GATC 4 cut(s) 14, 26, 196, 241
DraI TTTAAA 1 cut(s) 388
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco31I GGTCTC 1 cut(s) 148
EcoRI GAATTC 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 181
FaiI YATR 2 cut(s) 335, 374
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 2 cut(s) 199, 222
Fnu4HI GCNGC 3 cut(s) 6, 116, 297
FokI GGATG 2 cut(s) 242, 363
Fsp4HI GCNGC 3 cut(s) 6, 116, 297
FspBI CTAG 2 cut(s) 402, 406
GluI GCNGC 3 cut(s) 6, 116, 297
HaeIII GGCC 1 cut(s) 8
HapII CCGG 4 cut(s) 24, 36, 110, 192
HgaI GACGC 1 cut(s) 41
Hin1I GRCGYC 2 cut(s) 33, 188
HinfI GANTC 2 cut(s) 85, 356
HpaII CCGG 4 cut(s) 24, 36, 110, 192
HphI GGTGA 1 cut(s) 91
Hpy188I TCNGA 7 cut(s) 19, 31, 153, 178, 201, 246, 255
Hpy188III TCNNGA 4 cut(s) 89, 121, 207, 313
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 2 cut(s) 188, 248
HpyCH4V TGCA 2 cut(s) 299, 383
HpyF3I CTNAG 2 cut(s) 150, 269
HpySE526I ACGT 2 cut(s) 188, 248
Hsp92I GRCGYC 2 cut(s) 33, 188
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Kzo9I GATC 4 cut(s) 14, 26, 196, 241
LmnI GCTCC 2 cut(s) 112, 178
LpnPI CCDG 9 cut(s) 29, 37, 49, 123, 168, 195, 205, 338, 393
Lsp1109I GCAGC 2 cut(s) 127, 283
MaeI CTAG 2 cut(s) 402, 406
MaeII ACGT 2 cut(s) 188, 248
MaeIII GTNAC 1 cut(s) 64
MalI GATC 4 cut(s) 16, 28, 198, 243
MboI GATC 4 cut(s) 14, 26, 196, 241
MboII GAAGA 4 cut(s) 94, 136, 268, 328
MflI RGATCY 3 cut(s) 14, 26, 196
MluCI AATT 2 cut(s) 202, 262
MmeI TCCRAC 3 cut(s) 33, 54, 156
MnlI CCTC 1 cut(s) 312
MreI CGCCGGCG 1 cut(s) 35
MroNI GCCGGC 1 cut(s) 35
MseI TTAA 1 cut(s) 387
MspI CCGG 4 cut(s) 24, 36, 110, 192
MspR9I CCNGG 3 cut(s) 24, 183, 193
MvaI CCWGG 1 cut(s) 183
NaeI GCCGGC 1 cut(s) 37
NciI CCSGG 2 cut(s) 24, 193
NdeII GATC 4 cut(s) 14, 26, 196, 241
NgoMIV GCCGGC 1 cut(s) 35
NlaIV GGNNCC 4 cut(s) 16, 28, 180, 198
PdiI GCCGGC 1 cut(s) 37
PfeI GAWTC 2 cut(s) 85, 356
PkrI GCNGC 3 cut(s) 7, 117, 298
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 4 cut(s) 16, 28, 180, 198
PsuI RGATCY 3 cut(s) 14, 26, 196
RsaI GTAC 2 cut(s) 95, 108
RsaNI GTAC 2 cut(s) 94, 107
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 3 cut(s) 6, 116, 297
Sau3AI GATC 4 cut(s) 14, 26, 196, 241
ScrFI CCNGG 3 cut(s) 24, 183, 193
SetI ASST 8 cut(s) 45, 120, 131, 151, 191, 251, 323, 407
SgrAI CRCCGGYG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 2 cut(s) 202, 262
SsiI CCGC 2 cut(s) 5, 77
SspI AATATT 1 cut(s) 343
SspMI CTAG 2 cut(s) 402, 406
StyD4I CCNGG 3 cut(s) 22, 181, 191
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 2 cut(s) 191, 251
TaqI TCGA 1 cut(s) 144
TasI AATT 2 cut(s) 202, 262
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 85, 356
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 1 cut(s) 109
TseI GCWGC 2 cut(s) 115, 296
TspDTI ATGAA 2 cut(s) 127, 361
TspGWI ACGGA 1 cut(s) 406
TspRI CASTG 1 cut(s) 109
XapI RAATTY 2 cut(s) 202, 262
XspI CTAG 2 cut(s) 402, 406
ZraI GACGTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.