pycom01g10990

cytochrome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0011592
Physical Location & Seq
Forward (+)
11782308 .. 11784131
1824 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g10990.3

Sequence Viewer

Length: 402 bp
ATGGGTTCAAACTCTGAAGTTTATCTCTTCGATGAGGTGGCAAAGCACAACCACAAGAAAGATTGTTGGATCATAATCTCTGGAAAGGTTTATGATGTGACCCCTTTCTTGGAGGAACACCCTGGAGGCGATGAAGTCTTGCTATTAGCAGTCGAAAAAGATGCAACAGATGATTTTAATGATGTGGGGCACAGCGATTCCGCGAGGGAGCTGATGGAAAAATACTATGTAGGCAAGGTTGACACGTCCACCATACCGGCACAGCCAAATTACAAGCTTCCTCCTCAAGCAGCTGCTCCCGCTGAACAATCTTCTGGACTTATGGTAAAACTTTTACAGTTTCTGCTACCCTTGTTGATCTTGGGAGCTGCATTTGCTCTGCAATACTACAATAAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyt-b5

Protein Analysis

134

Amino Acids

14.77

Weight (kDa)

4.95

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 203
AciI CCGC 2 cut(s) 201, 300
AclWI GGATC 1 cut(s) 77
AcuI CTGAAG 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 109
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 1 cut(s) 9
AjiI CACGTC 1 cut(s) 246
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 4 cut(s) 211, 277, 293, 368
AluI AGCT 4 cut(s) 211, 277, 293, 368
AlwI GGATC 1 cut(s) 77
AlwNI CAGNNNCTG 1 cut(s) 343
ApeKI GCWGC 3 cut(s) 290, 293, 368
BaeGI GKGCMC 1 cut(s) 192
BbvI GCAGC 3 cut(s) 280, 302, 355
BccI CCATC 1 cut(s) 208
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BciT130I CCWGG 1 cut(s) 123
BisI GCNGC 3 cut(s) 291, 294, 369
BlsI GCNGC 3 cut(s) 292, 295, 370
Bme1390I CCNGG 1 cut(s) 123
BmgBI CACGTC 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse118I RCCGGY 1 cut(s) 256
Bse8I GATNNNNATC 1 cut(s) 74
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 121
BseJI GATNNNNATC 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 109
BseRI GAGGAG 1 cut(s) 273
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 3 cut(s) 280, 302, 355
Bsh1236I CGCG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 257
BslI CCNNNNNNNGG 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 2 cut(s) 69, 357
BspACI CCGC 2 cut(s) 201, 300
BspFNI CGCG 1 cut(s) 203
BspPI GGATC 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 2 cut(s) 69, 357
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 339
Bst6I CTCTTC 1 cut(s) 32
BstFNI CGCG 1 cut(s) 203
BstKTI GATC 2 cut(s) 72, 360
BstMBI GATC 2 cut(s) 69, 357
BstMWI GCNNNNNNNGC 2 cut(s) 299, 374
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstSLI GKGCMC 1 cut(s) 192
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 3 cut(s) 280, 302, 355
BtgZI GCGATG 1 cut(s) 144
BtrI CACGTC 1 cut(s) 246
CaiI CAGNNNCTG 1 cut(s) 343
Cfr10I RCCGGY 1 cut(s) 256
CviJI RGCY 5 cut(s) 211, 265, 277, 293, 368
CviKI_1 RGCY 5 cut(s) 211, 265, 277, 293, 368
DpnI GATC 2 cut(s) 71, 359
DpnII GATC 2 cut(s) 69, 357
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 121
FaiI YATR 5 cut(s) 74, 93, 228, 254, 323
FauI CCCGC 1 cut(s) 307
Fnu4HI GCNGC 3 cut(s) 291, 294, 369
Fsp4HI GCNGC 3 cut(s) 291, 294, 369
GluI GCNGC 3 cut(s) 291, 294, 369
GsuI CTGGAG 1 cut(s) 144
HapII CCGG 1 cut(s) 257
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 1 cut(s) 197
HpaII CCGG 1 cut(s) 257
Hpy166II GTNNAC 2 cut(s) 241, 249
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 2 cut(s) 81, 315
Hpy8I GTNNAC 2 cut(s) 241, 249
HpyCH4III ACNGT 1 cut(s) 339
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 3 cut(s) 164, 371, 382
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 374
HpySE526I ACGT 1 cut(s) 245
Kzo9I GATC 2 cut(s) 69, 357
LmnI GCTCC 3 cut(s) 208, 301, 365
LpnPI CCDG 5 cut(s) 66, 108, 135, 270, 300
Lsp1109I GCAGC 3 cut(s) 280, 302, 355
LweI GCATC 1 cut(s) 151
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 97
MalI GATC 2 cut(s) 71, 359
MboI GATC 2 cut(s) 69, 357
MboII GAAGA 2 cut(s) 19, 303
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 1 cut(s) 268
MmeI TCCRAC 1 cut(s) 47
MnlI CCTC 6 cut(s) 28, 106, 119, 198, 291, 294
MseI TTAA 1 cut(s) 177
MspA1I CMGCKG 2 cut(s) 293, 302
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 2 cut(s) 299, 374
NdeII GATC 2 cut(s) 69, 357
NmuCI GTSAC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 3 cut(s) 292, 295, 370
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 343
PvuII CAGCTG 1 cut(s) 293
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 3 cut(s) 291, 294, 369
Sau3AI GATC 2 cut(s) 69, 357
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 1 cut(s) 192
SetI ASST 8 cut(s) 39, 90, 213, 240, 248, 279, 295, 370
SfaNI GCATC 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 1 cut(s) 268
SsiI CCGC 2 cut(s) 201, 300
StyD4I CCNGG 1 cut(s) 121
TaaI ACNGT 1 cut(s) 339
TaiI ACGT 1 cut(s) 248
TaqI TCGA 2 cut(s) 30, 153
TasI AATT 1 cut(s) 268
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 3 cut(s) 290, 293, 368
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.