Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011592

Physical Location & Seq

Genomic Coordinates Forward (+)

17448346 .. 17450318

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g15260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGTTCAAAATCTCAACTTTTTCACTACGATGAGGTGGCAAAGCACAACCACAAGAAAGATTGTTGGATCATAATCTCTGGAAAGGTTTATGATGTGACCCCTTTTTTGGAGGAACACCCTGGAGGTGATGAAGTCTTGCTATTAGCAGTTGAAAAAGATGCAACAGATGACTTTAATGATGTCGGCCACAGTGATTCCGCGAGGGAGCAGATGGAAAAATTCTACGTAGGCAAGGTTGACACATCCACCATACCGGCACAGCCAAATTACAAGCTTCCTGCTCAAGCAGCTGCTCAATCTGAACAATCTTCTGGACTTTTGGTAAAACTTTTACAGTTTCTGCTGCCCTTGTTGATCGATCTCTCCTCATGGGAGCTGCATTTGCTCTGCAATACTACAATAAAAAGTAGTCTAATTATCCTCCATGCGTATGAACTTTCTTCAGACCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

152

Amino Acids

16.9

Weight (kDa)

5.1

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011592)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g17290 FvH4_7g17290
malus_domestica	MD00G1035900.v1.1 MD07G1155300.v1.1
prunus_persica	Prupe.2G194100_v2.0.a1 Prupe.2G194100_v2.0.a1 Prupe.2G194100_v2.0.a1 Prupe.2G194100_v2.0.a1
pyrus_communis	pycom01g10990 pycom07g15260
rosa_chinensis	RchiOBHm_Chr1g0360711
rosa_multiflora	Rmu_ssc0000022.1_g000006
rosa_roxburghii	Rroxscaffold_4G00295910
rosa_rugosa	Rorug01G0281000 Rorug01G0281100
rosa_samantha	Rh1AG293100 Rh1BG257500 Rh1CG275400 Rh1DG287600
rosa_wichuraiana	Rw1G025920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	203
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	429
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	2 cut(s)	9, 155
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	3 cut(s)	277, 293, 379
AluI	AGCT	3 cut(s)	277, 293, 379
AlwI	GGATC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	343
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	4 cut(s)	290, 293, 346, 379
ApoI	RAATTY	1 cut(s)	221
ArsI	GACNNNNNNTTYG	2 cut(s)	91, 123
AsuHPI	GGTGA	1 cut(s)	140
BbvI	GCAGC	4 cut(s)	280, 302, 333, 366
BccI	CCATC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	123
BisI	GCNGC	4 cut(s)	291, 294, 347, 380
BlsI	GCNGC	4 cut(s)	292, 295, 348, 381
Bme1390I	CCNGG	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	270
Bsa29I	ATCGAT	1 cut(s)	360
BsaAI	YACGTR	1 cut(s)	229
BsaBI	GATNNNNATC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse118I	RCCGGY	1 cut(s)	256
Bse8I	GATNNNNATC	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	123
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	1 cut(s)	245
BseJI	GATNNNNATC	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	358
BseXI	GCAGC	4 cut(s)	280, 302, 333, 366
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	189
BshVI	ATCGAT	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	109
BsnI	GGCC	1 cut(s)	189
Bsp143I	GATC	3 cut(s)	69, 357, 361
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	189
BspDI	ATCGAT	1 cut(s)	360
BspFNI	CGCG	1 cut(s)	203
BspPI	GGATC	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	256
BssAI	RCCGGY	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	3 cut(s)	69, 357, 361
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	194, 339
BstBAI	YACGTR	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	245
BstFNI	CGCG	1 cut(s)	203
BstKTI	GATC	3 cut(s)	72, 360, 364
BstMBI	GATC	3 cut(s)	69, 357, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 385
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BstSNI	TACGTA	1 cut(s)	229
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	4 cut(s)	280, 302, 333, 366
Bsu15I	ATCGAT	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	360
BtsCI	GGATG	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	199
CaiI	CAGNNNCTG	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	256
ClaI	ATCGAT	1 cut(s)	360
CviAII	CATG	2 cut(s)	372, 428
CviJI	RGCY	5 cut(s)	189, 265, 277, 293, 379
CviKI_1	RGCY	5 cut(s)	189, 265, 277, 293, 379
DpnI	GATC	3 cut(s)	71, 359, 363
DpnII	GATC	3 cut(s)	69, 357, 361
EaeI	YGGCCR	1 cut(s)	187
Eco105I	TACGTA	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	121
FaeI	CATG	2 cut(s)	375, 431
FaiI	YATR	6 cut(s)	74, 93, 254, 373, 429, 435
FatI	CATG	2 cut(s)	371, 427
Fnu4HI	GCNGC	4 cut(s)	291, 294, 347, 380
FokI	GGATG	1 cut(s)	232
Fsp4HI	GCNGC	4 cut(s)	291, 294, 347, 380
GluI	GCNGC	4 cut(s)	291, 294, 347, 380
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	1 cut(s)	257
Hin1II	CATG	2 cut(s)	375, 431
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	304, 448
Hpy188III	TCNNGA	2 cut(s)	81, 315
Hpy8I	GTNNAC	1 cut(s)	241
HpyCH4III	ACNGT	2 cut(s)	194, 339
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	164, 382, 393
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 385
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	375, 431
Kzo9I	GATC	3 cut(s)	69, 357, 361
LmnI	GCTCC	2 cut(s)	208, 376
LpnPI	CCDG	6 cut(s)	66, 108, 135, 270, 294, 300
Lsp1109I	GCAGC	4 cut(s)	280, 302, 333, 366
LweI	GCATC	1 cut(s)	151
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	3 cut(s)	71, 359, 363
MboI	GATC	3 cut(s)	69, 357, 361
MboII	GAAGA	2 cut(s)	303, 435
MluCI	AATT	3 cut(s)	221, 268, 417
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	6 cut(s)	28, 106, 119, 198, 379, 434
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	2 cut(s)	30, 432
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	290, 385
NdeII	GATC	3 cut(s)	69, 357, 361
NlaIII	CATG	2 cut(s)	375, 431
NmuCI	GTSAC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	4 cut(s)	292, 295, 348, 381
Ppu21I	YACGTR	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	293
RseI	CAYNNNNRTG	2 cut(s)	30, 432
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	4 cut(s)	291, 294, 347, 380
Sau3AI	GATC	3 cut(s)	69, 357, 361
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	8 cut(s)	39, 90, 130, 231, 240, 279, 295, 381
SfaNI	GCATC	1 cut(s)	151
SmiMI	CAYNNNNRTG	2 cut(s)	30, 432
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
SnaBI	TACGTA	1 cut(s)	229
Sse9I	AATT	3 cut(s)	221, 268, 417
SsiI	CCGC	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	2 cut(s)	194, 339
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	360
TasI	AATT	3 cut(s)	221, 268, 417
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	4 cut(s)	290, 293, 346, 379
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	2 cut(s)	147, 450
TspRI	CASTG	1 cut(s)	199
XapI	RAATTY	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.