FvH4_7g17740

Conserved oligomeric Golgi complex subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
14978854 .. 14982632
3779 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17740.t1

Sequence Viewer

Length: 1359 bp
ATGCTTCAACTCTTTCTACGCTCACCCAAAACCCTACTAACCCTTCCCCCCAAAACCCAACTCCTCATCTCCTTCTTCTCCCACTCCCCCCAACCCCACCACGAATCCATCCTCGGCTCCCCCGCCAGAGTCCAAAAGCTCATCGCCTCCCAATCCGACCCTCTCCTCGCCAAAGAGATCTTCGACTTCGCCGCCCAACACCCCCATTTCCGCCACTCCTACTCCTCCTACTTCACCCTCATCCTTAAACTCGGCCGCGCCCATTACTTCTCTCTCGTCGACGACCTCCTCCTCCGTCTCAAGTCCCAACCCACCTCCTACTCCCCCTCCCCTGCCCTCTTCACCCACCTCATCAAAATCTACGGCGATGCCCATCTCCCCCAGAAAGCCCTCAGAACCTTCTACACTATGTTCCAGTTCAACTGCAAACCCACTGTAAAGCACCTCAACCGGATCCTTGAGATTCTTGTGGCTCACCGCAACTTCCTCCGGTCGGCTTTCGACGTTTTTAGGGACGCTCACCGCCACGGCGTGGTGCCGGATACGAAATCGTACAACATTCTGATGAGGGCGTTTTGCTTGAATGGGGATTTGAGCGTTGCGTATGGCTTGTTTAATAAAATGTACGAGAGAGATGTTGTACCGGATGTGGAGTCGTATCGGATTCTGATGCAGGGGCTGTGCAGGAAGGGGCAGGTGAATACTTCTGTGGATTTTCTGGAGGATATGATGAATAAAGGTTTTGTTCCGGATTCGTTGAGTTATACTAGCTTGTTAAATAGTTTGTGCAGGAAAAAGCAGCTGCGTGAGGCGTATAAGCTGCTGTGTAGGATGAAGGTGAAGGGGTGCAATCCTGACATTGTGCATTATAACACTGTTATATCGGGGTTTTGTAGGGAAGGGAGAGCGGTGGATGCTTGTAAGGTTCTTGAGGATATGGAGTCTAATGGGTGCTTGCCGAATTTGGTGTCGTATAGGACTTTGGTTAGCGGGTTGTGTGATCAGGGGATGCTTGATGAGGCGAAGAAGTATATGGAGGTGATGATATTGAAGGGGTTTTCGCCTCATTTTTCGGTTGTACATGGTTTGGTTAAGGGGTTTTGCAATGTGGGTAGGATTGAGGATGCTTGTGGAGTTATGGAGGAGATACTGAGGCATGGGGAGGTTCCGCATAGGGATACTTGGATAACAATAATTCCGGGGATATGTGAAGAGATTGAGCTGGTGAGGTTGGAAGAAGTTTGGAAACAGATAATGAAGGTTGAGATCAAGCCTAGCACCAGAATAGTGGAGGCAGCTTTTGGTTTGGAGAACTACTTGATCAAAAGGATTCATGCTAGTAAAACATGGAGAGGTTGA

Protein Analysis

453

Amino Acids

51.71

Weight (kDa)

9.03

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 86 - 207 3.9e-08 Fungal tetratrico peptide repeats
PPR_long PF17177 129 - 260 1.4e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 150 - 193 2.1e-06 PPR repeat family
PPR_3 PF13812 169 - 225 6.1e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 177 - 208 3.9e-08 PPR repeat
PPR_2 PF13041 180 - 229 2.3e-14 PPR repeat family
PPR_1 PF12854 212 - 243 8.6e-07 PPR repeat
PPR_2 PF13041 215 - 264 2.8e-13 PPR repeat family
PPR_long PF17177 237 - 337 8.5e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 240 - 296 3.4e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 246 - 279 1.6e-08 PPR repeat
PPR_2 PF13041 251 - 287 3.6e-09 PPR repeat family
PPR PF01535 254 - 283 5.2e-07 PPR repeat
PPR_1 PF12854 281 - 314 1e-13 PPR repeat
PPR_3 PF13812 285 - 329 5.7e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 285 - 334 9e-17 PPR repeat family
PPR PF01535 288 - 318 6.5e-08 PPR repeat
PPR_1 PF12854 316 - 348 1.9e-09 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011389)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 870
AarI CACCTGC 1 cut(s) 685
Acc36I ACCTGC 1 cut(s) 685
AccB1I GGYRCC 1 cut(s) 535
AccB7I CCANNNNNTGG 1 cut(s) 532
AccBSI CCGCTC 1 cut(s) 908
AccI GTMKAC 1 cut(s) 279
AccII CGCG 1 cut(s) 258
AccIII TCCGGA 1 cut(s) 748
AciI CCGC 9 cut(s) 123, 192, 211, 256, 478, 523, 908, 990, 1169
AclWI GGATC 2 cut(s) 448, 461
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 1 cut(s) 961
AdeI CACNNNGTG 1 cut(s) 532
AfaI GTAC 4 cut(s) 554, 626, 642, 1080
AfiI CCNNNNNNNGG 2 cut(s) 493, 532
AgsI TTSAA 4 cut(s) 8, 421, 583, 1051
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 6 cut(s) 139, 771, 802, 820, 1222, 1298
AluI AGCT 6 cut(s) 139, 771, 802, 820, 1222, 1298
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 2 cut(s) 448, 461
AlwNI CAGNNNCTG 1 cut(s) 679
Aor13HI TCCGGA 1 cut(s) 748
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 4 cut(s) 799, 802, 820, 1295
ApoI RAATTY 1 cut(s) 961
ArsI GACNNNNNNTTYG 2 cut(s) 953, 985
AspLEI GCGC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 1200
AsuHPI GGTGA 9 cut(s) 15, 226, 334, 467, 512, 709, 850, 1051, 1237
BamHI GGATCC 1 cut(s) 453
BanI GGYRCC 1 cut(s) 535
BbvI GCAGC 4 cut(s) 789, 807, 811, 1307
BccI CCATC 2 cut(s) 116, 381
BceAI ACGGC 2 cut(s) 379, 544
BciVI GTATCC 2 cut(s) 535, 1171
BclI TGATCA 2 cut(s) 1000, 1320
BcnI CCSGG 1 cut(s) 1200
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 3 cut(s) 768, 1275, 1338
BfuAI ACCTGC 1 cut(s) 685
BfuI GTATCC 2 cut(s) 535, 1171
BglII AGATCT 1 cut(s) 177
BisI GCNGC 6 cut(s) 192, 256, 800, 803, 821, 1296
BlsI GCNGC 6 cut(s) 193, 257, 801, 804, 822, 1297
Bme1390I CCNGG 1 cut(s) 1200
BmiI GGNNCC 4 cut(s) 118, 455, 537, 1167
BmrFI CCNGG 1 cut(s) 1200
BmsI GCATC 5 cut(s) 358, 660, 904, 999, 1114
BpmI CTGGAG 1 cut(s) 740
BpuEI CTTGAG 3 cut(s) 284, 479, 950
BpuMI CCSGG 1 cut(s) 1200
BsaBI GATNNNNATC 1 cut(s) 372
BsaJI CCNNGG 3 cut(s) 112, 526, 1199
BsaWI WCCGGW 4 cut(s) 450, 489, 643, 748
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 311, 341
Bsc4I CCNNNNNNNGG 2 cut(s) 493, 532
Bse1I ACTGG 1 cut(s) 415
Bse3DI GCAATG 1 cut(s) 1111
Bse8I GATNNNNATC 1 cut(s) 372
BseAI TCCGGA 1 cut(s) 748
BseDI CCNNGG 3 cut(s) 112, 526, 1199
BseGI GGATG 7 cut(s) 108, 240, 652, 837, 919, 1014, 1129
BseJI GATNNNNATC 1 cut(s) 372
BseLI CCNNNNNNNGG 2 cut(s) 493, 532
BseMI GCAATG 1 cut(s) 1111
BseMII CTCAG 2 cut(s) 406, 1142
BseNI ACTGG 1 cut(s) 415
BseRI GAGGAG 6 cut(s) 53, 155, 214, 278, 281, 1157
BseX3I CGGCCG 1 cut(s) 253
BseXI GCAGC 4 cut(s) 789, 807, 811, 1307
BsgI GTGCAG 2 cut(s) 703, 808
Bsh1236I CGCG 1 cut(s) 258
Bsh1285I CGRYCG 2 cut(s) 256, 494
BshFI GGCC 1 cut(s) 255
BshNI GGYRCC 1 cut(s) 535
BsiEI CGRYCG 2 cut(s) 256, 494
BsiSI CCGG 6 cut(s) 451, 490, 539, 644, 749, 1199
BslFI GGGAC 2 cut(s) 289, 527
BslI CCNNNNNNNGG 2 cut(s) 493, 532
BsmAI GTCTC 1 cut(s) 302
BsmBI CGTCTC 1 cut(s) 302
BsmFI GGGAC 2 cut(s) 289, 527
BsnI GGCC 1 cut(s) 255
Bsp13I TCCGGA 1 cut(s) 748
Bsp1407I TGTACA 1 cut(s) 1078
Bsp143I GATC 5 cut(s) 177, 453, 1000, 1266, 1320
BspACI CCGC 9 cut(s) 123, 192, 211, 256, 478, 523, 908, 990, 1169
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 2 cut(s) 405, 1143
BspEI TCCGGA 1 cut(s) 748
BspFNI CGCG 1 cut(s) 258
BspLI GGNNCC 4 cut(s) 118, 455, 537, 1167
BspMI ACCTGC 1 cut(s) 685
BspPI GGATC 2 cut(s) 448, 461
BspT107I GGYRCC 1 cut(s) 535
BsrBI CCGCTC 1 cut(s) 908
BsrDI GCAATG 1 cut(s) 1111
BsrGI TGTACA 1 cut(s) 1078
BsrI ACTGG 1 cut(s) 415
BssECI CCNNGG 3 cut(s) 112, 526, 1199
BssMI GATC 5 cut(s) 177, 453, 1000, 1266, 1320
Bst4CI ACNGT 2 cut(s) 436, 877
Bst6I CTCTTC 2 cut(s) 344, 1206
BstAUI TGTACA 1 cut(s) 1078
BstC8I GCNNGC 1 cut(s) 956
BstDEI CTNAG 2 cut(s) 392, 1151
BstDSI CCRYGG 1 cut(s) 526
BstF5I GGATG 7 cut(s) 108, 240, 652, 837, 919, 1014, 1129
BstFNI CGCG 1 cut(s) 258
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 5 cut(s) 180, 456, 1003, 1269, 1323
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 5 cut(s) 177, 453, 1000, 1266, 1320
BstMCI CGRYCG 2 cut(s) 256, 494
BstMWI GCNNNNNNNGC 1 cut(s) 914
BstSCI CCNGG 1 cut(s) 1198
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 4 cut(s) 789, 807, 811, 1307
BstX2I RGATCY 2 cut(s) 177, 453
BstXI CCANNNNNNTGG 1 cut(s) 1288
BstYI RGATCY 2 cut(s) 177, 453
BstZI CGGCCG 1 cut(s) 253
BsuI GTATCC 2 cut(s) 535, 1171
BsuRI GGCC 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 526
BtgZI GCGATG 2 cut(s) 127, 381
BtsCI GGATG 7 cut(s) 108, 240, 652, 837, 919, 1014, 1129
BtsIMutI CAGTG 2 cut(s) 432, 873
BveI ACCTGC 1 cut(s) 685
Cac8I GCNNGC 1 cut(s) 956
CaiI CAGNNNCTG 1 cut(s) 679
CfoI GCGC 1 cut(s) 260
CseI GACGC 1 cut(s) 524
Csp6I GTAC 4 cut(s) 553, 625, 641, 1079
CviAII CATG 4 cut(s) 1082, 1157, 1334, 1347
CviQI GTAC 4 cut(s) 553, 625, 641, 1079
DdeI CTNAG 2 cut(s) 392, 1151
DpnI GATC 5 cut(s) 179, 455, 1002, 1268, 1322
DpnII GATC 5 cut(s) 177, 453, 1000, 1266, 1320
DraIII CACNNNGTG 1 cut(s) 532
EaeI YGGCCR 1 cut(s) 253
EagI CGGCCG 1 cut(s) 253
Eam1104I CTCTTC 2 cut(s) 344, 1206
EarI CTCTTC 2 cut(s) 344, 1206
EciI GGCGGA 1 cut(s) 200
EclXI CGGCCG 1 cut(s) 253
Eco52I CGGCCG 1 cut(s) 253
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 4 cut(s) 1085, 1160, 1337, 1350
FaqI GGGAC 2 cut(s) 289, 527
FatI CATG 4 cut(s) 1081, 1156, 1333, 1346
FauI CCCGC 2 cut(s) 130, 983
FbaI TGATCA 2 cut(s) 1000, 1320
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 6 cut(s) 192, 256, 800, 803, 821, 1296
FokI GGATG 7 cut(s) 95, 227, 659, 844, 926, 1021, 1136
Fsp4HI GCNGC 6 cut(s) 192, 256, 800, 803, 821, 1296
FspBI CTAG 3 cut(s) 768, 1275, 1338
GlaI GCGC 1 cut(s) 259
GluI GCNGC 6 cut(s) 192, 256, 800, 803, 821, 1296
GsuI CTGGAG 1 cut(s) 740
HaeIII GGCC 1 cut(s) 255
HapII CCGG 6 cut(s) 451, 490, 539, 644, 749, 1199
HgaI GACGC 1 cut(s) 524
HhaI GCGC 1 cut(s) 260
Hin1II CATG 4 cut(s) 1085, 1160, 1337, 1350
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 8 cut(s) 104, 129, 463, 653, 664, 752, 941, 1330
HpaII CCGG 6 cut(s) 451, 490, 539, 644, 749, 1199
HphI GGTGA 9 cut(s) 15, 226, 334, 467, 512, 709, 850, 1051, 1237
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 5 cut(s) 157, 395, 564, 663, 669
Hpy188III TCNNGA 4 cut(s) 719, 749, 854, 929
Hpy8I GTNNAC 1 cut(s) 280
Hpy99I CGWCG 3 cut(s) 281, 284, 506
HpyAV CCTTC 9 cut(s) 53, 82, 409, 682, 829, 835, 893, 1045, 1252
HpyCH4III ACNGT 2 cut(s) 436, 877
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 7 cut(s) 426, 673, 684, 789, 849, 865, 1104
HpyF10VI GCNNNNNNNGC 1 cut(s) 914
HpyF3I CTNAG 2 cut(s) 392, 1151
HpySE526I ACGT 1 cut(s) 504
Hsp92II CATG 4 cut(s) 1085, 1160, 1337, 1350
HspAI GCGC 1 cut(s) 258
Kpn2I TCCGGA 1 cut(s) 748
Ksp22I TGATCA 2 cut(s) 1000, 1320
Kzo9I GATC 5 cut(s) 177, 453, 1000, 1266, 1320
LmnI GCTCC 1 cut(s) 122
Lsp1109I GCAGC 4 cut(s) 789, 807, 811, 1307
LweI GCATC 5 cut(s) 358, 660, 904, 999, 1114
MaeI CTAG 3 cut(s) 768, 1275, 1338
MaeII ACGT 1 cut(s) 504
MalI GATC 5 cut(s) 179, 455, 1002, 1268, 1322
MbiI CCGCTC 1 cut(s) 908
MboI GATC 5 cut(s) 177, 453, 1000, 1266, 1320
MboII GAAGA 6 cut(s) 67, 172, 331, 1036, 1223, 1247
MflI RGATCY 2 cut(s) 177, 453
MluCI AATT 2 cut(s) 961, 1194
MlyI GAGTC 3 cut(s) 138, 662, 950
MmeI TCCRAC 2 cut(s) 180, 1212
MroI TCCGGA 1 cut(s) 748
MseI TTAA 4 cut(s) 246, 615, 776, 1092
MslI CAYNNNNRTG 1 cut(s) 563
MspA1I CMGCKG 1 cut(s) 802
MspI CCGG 6 cut(s) 451, 490, 539, 644, 749, 1199
MspR9I CCNGG 1 cut(s) 1200
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 914
NciI CCSGG 1 cut(s) 1200
NdeII GATC 5 cut(s) 177, 453, 1000, 1266, 1320
NlaIII CATG 4 cut(s) 1085, 1160, 1337, 1350
NlaIV GGNNCC 4 cut(s) 118, 455, 537, 1167
NmeAIII GCCGAG 2 cut(s) 93, 231
PaqCI CACCTGC 1 cut(s) 685
PfeI GAWTC 5 cut(s) 104, 463, 664, 752, 1330
PflMI CCANNNNNTGG 1 cut(s) 532
PkrI GCNGC 6 cut(s) 193, 257, 801, 804, 822, 1297
PleI GAGTC 3 cut(s) 137, 661, 949
PpsI GAGTC 3 cut(s) 137, 661, 949
PsiI TTATAA 1 cut(s) 870
PspN4I GGNNCC 4 cut(s) 118, 455, 537, 1167
PstNI CAGNNNCTG 1 cut(s) 679
PsuI RGATCY 2 cut(s) 177, 453
PvuII CAGCTG 1 cut(s) 802
RsaI GTAC 4 cut(s) 554, 626, 642, 1080
RsaNI GTAC 4 cut(s) 553, 625, 641, 1079
RseI CAYNNNNRTG 1 cut(s) 563
SalI GTCGAC 1 cut(s) 278
SaqAI TTAA 4 cut(s) 246, 615, 776, 1092
SatI GCNGC 6 cut(s) 192, 256, 800, 803, 821, 1296
Sau3AI GATC 5 cut(s) 177, 453, 1000, 1266, 1320
SchI GAGTC 3 cut(s) 138, 662, 950
ScrFI CCNGG 1 cut(s) 1200
SfaNI GCATC 5 cut(s) 358, 660, 904, 999, 1114
SgrDI CGTCGACG 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 563
SmlI CTYRAG 3 cut(s) 299, 458, 929
SmoI CTYRAG 3 cut(s) 299, 458, 929
Sse9I AATT 2 cut(s) 961, 1194
SsiI CCGC 9 cut(s) 123, 192, 211, 256, 478, 523, 908, 990, 1169
SspMI CTAG 3 cut(s) 768, 1275, 1338
StyD4I CCNGG 1 cut(s) 1198
TaaI ACNGT 2 cut(s) 436, 877
TaiI ACGT 1 cut(s) 507
TaqI TCGA 3 cut(s) 183, 279, 501
TasI AATT 2 cut(s) 961, 1194
TatI WGTACW 1 cut(s) 1078
TauI GCSGC 2 cut(s) 194, 258
TfiI GAWTC 5 cut(s) 104, 463, 664, 752, 1330
Tru1I TTAA 4 cut(s) 246, 615, 776, 1092
Tru9I TTAA 4 cut(s) 246, 615, 776, 1092
TscAI CASTG 2 cut(s) 439, 880
TseI GCWGC 4 cut(s) 799, 802, 820, 1295
TspDTI ATGAA 4 cut(s) 746, 848, 1271, 1322
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 2 cut(s) 439, 880
Van91I CCANNNNNTGG 1 cut(s) 532
XapI RAATTY 1 cut(s) 961
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 3 cut(s) 768, 1275, 1338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.