Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011389

Physical Location & Seq

Genomic Coordinates Forward (+)

40046083 .. 40047670

Gene Structure 1588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0286000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCAAATTAGAAAATACAATTCTAGAAGAAAATCTAGGCTCGAAATTGTCATTGATATTGCTTCTGCCTTCGCGCACGGATTAGTCTCTGAGCCTAGGAAGTTTTTGAGGATACCGTGCAATTTCGATCAAAAAAATATTCACAGTCGTTGTGAAACACCAATAGTCCATTGTGATCTCAAGCCAAATAACATTCTTTTGGACAATGAGTTCACTGGACATGTTTCTGACCTTGCGCCGGCAAGGTTTCTCTTAAATGTTTCTGAAAATCAATCCAACACCCTTGGAATCAGAGGATCGGTTGGTTACATTGCTGTCCAGATACCTTTGATATTGTTTGATTGGCAAAGTATGGTATGGCCACTGTATGGGAAGTGCCTCACATGGGGATGTCTACAGATTTGGCATTCTCCTGTTAGAAATGTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

143

Amino Acids

16.46

Weight (kDa)

9.12

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01400
fragaria_vesca	FvH4_7g17740 FvH4_7g17740 FvH4_7g17740
malus_domestica	MD01G1088700.v1.1
prunus_persica	Prupe.2G196300_v2.0.a1
pyrus_communis	pycom01g11310
rosa_chinensis	RchiOBHm_Chr1g0361141
rosa_laevigata	RLG00000027746
rosa_multiflora	Rmu_sc0002863.1_g000035 Rmu_sc0020096.1_g000003
rosa_roxburghii	Rroxscaffold_4G00295390
rosa_rugosa	Rorug01G0286000 Rorug02G0035000
rosa_samantha	Rh1AG297500 Rh1BG261600 Rh1CG278900 Rh1DG291400
rosa_wichuraiana	Rw1G026270 Rw1G026900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	368
AccI	GTMKAC	1 cut(s)	394
AccII	CGCG	1 cut(s)	74
AclWI	GGATC	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	359
AfiI	CCNNNNNNNGG	3 cut(s)	238, 368, 385
AflIII	ACRYGT	1 cut(s)	220
AloI	GAACNNNNNNTCC	2 cut(s)	194, 226
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	1 cut(s)	304
AoxI	GGCC	1 cut(s)	359
AspA2I	CCTAGG	1 cut(s)	95
AspLEI	GCGC	2 cut(s)	76, 238
AvrII	CCTAGG	1 cut(s)	95
BalI	TGGCCA	1 cut(s)	361
BciVI	GTATCC	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	3 cut(s)	24, 36, 96
BfmI	CTRYAG	1 cut(s)	395
BfuI	GTATCC	1 cut(s)	105
BlnI	CCTAGG	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	95, 283
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 368, 385
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	220
Bse3DI	GCAATG	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	95, 283
BseGI	GGATG	1 cut(s)	395
BseLI	CCNNNNNNNGG	3 cut(s)	238, 368, 385
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	220
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	239
BslI	CCNNNNNNNGG	3 cut(s)	238, 368, 385
BsmAI	GTCTC	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	127, 175, 296
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	74
BspPI	GGATC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	95, 283
BssMI	GATC	3 cut(s)	127, 175, 296
BssT1I	CCWWGG	2 cut(s)	95, 283
Bst4CI	ACNGT	3 cut(s)	117, 146, 366
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	395
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	2 cut(s)	76, 238
BstKTI	GATC	3 cut(s)	130, 178, 299
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	3 cut(s)	127, 175, 296
BstNSI	RCATGY	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	395
BstUI	CGCG	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	395
BtsIMutI	CAGTG	2 cut(s)	213, 362
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	2 cut(s)	76, 238
Cfr10I	RCCGGY	1 cut(s)	238
CviAII	CATG	2 cut(s)	221, 384
CviJI	RGCY	4 cut(s)	40, 94, 184, 361
CviKI_1	RGCY	4 cut(s)	40, 94, 184, 361
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	3 cut(s)	129, 177, 298
DpnII	GATC	3 cut(s)	127, 175, 296
EaeI	YGGCCR	1 cut(s)	359
Eco130I	CCWWGG	2 cut(s)	95, 283
EcoT14I	CCWWGG	2 cut(s)	95, 283
ErhI	CCWWGG	2 cut(s)	95, 283
FaeI	CATG	2 cut(s)	224, 387
FaiI	YATR	5 cut(s)	222, 353, 358, 369, 385
FatI	CATG	2 cut(s)	220, 383
FblI	GTMKAC	1 cut(s)	394
FokI	GGATG	1 cut(s)	402
FspBI	CTAG	3 cut(s)	24, 36, 96
GlaI	GCGC	2 cut(s)	75, 237
HaeIII	GGCC	1 cut(s)	361
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	2 cut(s)	76, 238
Hin1II	CATG	2 cut(s)	224, 387
Hin6I	GCGC	2 cut(s)	74, 236
HinP1I	GCGC	2 cut(s)	74, 236
HinfI	GANTC	1 cut(s)	288
HpaII	CCGG	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	213, 395
Hpy188I	TCNGA	4 cut(s)	91, 229, 265, 293
Hpy188III	TCNNGA	2 cut(s)	24, 319
Hpy8I	GTNNAC	2 cut(s)	213, 395
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	3 cut(s)	117, 146, 366
HpyCH4V	TGCA	2 cut(s)	4, 120
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	224, 387
HspAI	GCGC	2 cut(s)	74, 236
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	127, 175, 296
LpnPI	CCDG	4 cut(s)	201, 252, 332, 426
MaeI	CTAG	3 cut(s)	24, 36, 96
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	3 cut(s)	129, 177, 298
MboI	GATC	3 cut(s)	127, 175, 296
MboII	GAAGA	1 cut(s)	39
MlsI	TGGCCA	1 cut(s)	361
MluCI	AATT	4 cut(s)	6, 19, 45, 121
MluNI	TGGCCA	1 cut(s)	361
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	3 cut(s)	102, 287, 389
Mox20I	TGGCCA	1 cut(s)	361
MroNI	GCCGGC	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	361
MseI	TTAA	1 cut(s)	254
MslI	CAYNNNNRTG	1 cut(s)	388
Msp20I	TGGCCA	1 cut(s)	361
MspI	CCGG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	406
MvnI	CGCG	1 cut(s)	74
NaeI	GCCGGC	1 cut(s)	240
NdeII	GATC	3 cut(s)	127, 175, 296
NgoMIV	GCCGGC	1 cut(s)	238
NlaIII	CATG	2 cut(s)	224, 387
NspI	RCATGY	1 cut(s)	224
PciI	ACATGT	1 cut(s)	220
PctI	GAATGC	1 cut(s)	406
PdiI	GCCGGC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	288
PflMI	CCANNNNNTGG	1 cut(s)	368
PscI	ACATGT	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	254
Sau3AI	GATC	3 cut(s)	127, 175, 296
SetI	ASST	3 cut(s)	234, 248, 328
SfcI	CTRYAG	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	4 cut(s)	6, 19, 45, 121
SspI	AATATT	1 cut(s)	139
SspMI	CTAG	3 cut(s)	24, 36, 96
StyI	CCWWGG	2 cut(s)	95, 283
TaaI	ACNGT	3 cut(s)	117, 146, 366
TaqI	TCGA	2 cut(s)	42, 126
TasI	AATT	4 cut(s)	6, 19, 45, 121
TfiI	GAWTC	1 cut(s)	288
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	2 cut(s)	220, 369
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	2 cut(s)	220, 369
Van91I	CCANNNNNTGG	1 cut(s)	368
XbaI	TCTAGA	1 cut(s)	23
XceI	RCATGY	1 cut(s)	224
XmaJI	CCTAGG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	394
XspI	CTAG	3 cut(s)	24, 36, 96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.