Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011389

Physical Location & Seq

Genomic Coordinates Reverse (-)

52880058 .. 52881928

Gene Structure 1871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG297500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGATGCTTCTACTCTCTCTGCGTTCACCCAAAACCGTACAAACCCTCCCTTCAAAACTCCCACCACTCCTCTCCTTCTTCTTCCACACCTCCCAACCCCACCATGAAATCATTGGGTCTCCTTCTAGAGTCCAAAAGCTCATCGCTTCCCAATCCGACCCTCTCCTCGCCAAAGAGATCTTCGACTTGGCCGCCCGCCACCCCCATTTCCGTCACTCCTACTCCTCCTACTTCACCCTCATCCTCAAGCTCGCCCGCTCCCACTACTTCTCTCTCGTCGACCACCTCCTCCTCCGCCTCAAGTCCCATACCTACTCCCCCTCCCCGGCTCTCTTCACACACCTCATCAAAATCTACGGCGAGGCCCATTTGCCCCAGAAGGCCCTCAAAACCTTCTACACAATGTTCCAATTCGACTGCAAACCCTCTGTCAAGCACCTCAACCGGATTCTCGACATTCTGGTCTCTCACCGGAACTTCCTCCGGCCTGCTTTCGACGTTTTCAAGGACGCCCACCGCCACGGGGTGGCGCCGGATACTAAATCCTACAACATTCTGATGAGGGCCTTCTGCTTGAATGGGGACCTCAGTGTTGCATACCACCTGTTCAACAAAATGTTTGAGAGAGAGGTTGTGCCGGATGTGGAGTCGTATCGGATTTTGATGCAGGGGCTGTGCAGGAAGGGGCAGGTGAACACTGCTGTGGATTTTCTGGAGGATATGATCAACAAAGGGTTCGTTCCGGATTCGTTGAGTTATACTAGCTTGTTGAATAGCTTGTGTAGGAAGAAACAGCTGCGTGAGGCGTATAAGCTTCTTTGTAGGATGAAGGTGAAGGGGTGTAACCCTGACATTGTGCATTACAATACTGTGATATTGGGGTTTTGTAGAGAAGGGAGGGCAGTGGATGCTTGTAAGGTTCTTGAGGATATGGCATCCAATGGGTGCTTGCCAAATTTGGTGTCGTATAGGACTTTGGTTAGTGGGTTGTCTGATCAGGGGATGCTTGATGAGGCGAAGAACTATATGGAGACAATGATATCAAAGGGGTTTTCTCCACATTTTTCGGTTATCCATGCTTTGGTTAAGGGGTTCTGCAATGTGGGTAGGGTCGAGGAAGCTTGTGGAGTTATGGAGGAGATACTAAGGCATGGGGAGGTTCCGCACAGGGAGACTTGGTTGACAATAGTTCCTGGGATATGCGAAGAGGTTGAGCTGGTGAGAATGGAAGAAGTTCTGAAGGAAATAATGAAGGTAGAGCTCAAGCCTAGCACCAGAATAGTGGAGGCAGCTTTTGGATTGGAGAACTACTTGATCAAAAAAATTCATGCTAGTAAATCAAGGAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

450

Amino Acids

51.38

Weight (kDa)

9.11

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	85 - 205	2.1e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	127 - 258	6.6e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	142 - 191	5.9e-07	PPR repeat family
PPR_3	PF13812	167 - 223	3.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	175 - 206	1.1e-07	PPR repeat
PPR_2	PF13041	178 - 227	2e-14	PPR repeat family
PPR_1	PF12854	210 - 241	1.9e-08	PPR repeat
PPR_2	PF13041	217 - 262	4e-13	PPR repeat family
PPR_3	PF13812	238 - 296	8.6e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	244 - 277	1.6e-08	PPR repeat
PPR_2	PF13041	249 - 285	3.6e-09	PPR repeat family
PPR	PF01535	252 - 281	5.2e-07	PPR repeat
PPR_long	PF17177	263 - 396	4.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	279 - 311	1.2e-11	PPR repeat
PPR_2	PF13041	283 - 331	4.2e-14	PPR repeat family
PPR	PF01535	286 - 316	6.3e-06	PPR repeat
PPR_1	PF12854	314 - 346	6.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01400
fragaria_vesca	FvH4_7g17740 FvH4_7g17740 FvH4_7g17740
malus_domestica	MD01G1088700.v1.1
prunus_persica	Prupe.2G196300_v2.0.a1
pyrus_communis	pycom01g11310
rosa_chinensis	RchiOBHm_Chr1g0361141
rosa_laevigata	RLG00000027746
rosa_multiflora	Rmu_sc0002863.1_g000035 Rmu_sc0020096.1_g000003
rosa_roxburghii	Rroxscaffold_4G00295390
rosa_rugosa	Rorug01G0286000 Rorug02G0035000
rosa_samantha	Rh1AG297500 Rh1BG261600 Rh1CG278900 Rh1DG291400
rosa_wichuraiana	Rw1G026270 Rw1G026900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	679
AasI	GACNNNNNNGTC	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	679
AccB1I	GGYRCC	1 cut(s)	529
AccB7I	CCANNNNNTGG	2 cut(s)	526, 1081
AccBSI	CCGCTC	1 cut(s)	258
AccI	GTMKAC	1 cut(s)	279
AccIII	TCCGGA	1 cut(s)	742
AciI	CCGC	6 cut(s)	192, 196, 256, 295, 517, 1163
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	2 cut(s)	955, 1323
AcuI	CTGAAG	1 cut(s)	1259
AcyI	GRCGYC	2 cut(s)	510, 530
AdeI	CACNNNGTG	1 cut(s)	526
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	4 cut(s)	325, 523, 526, 1081
AgsI	TTSAA	5 cut(s)	54, 505, 577, 610, 772
AjnI	CCWGG	1 cut(s)	1192
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AleI	CACNNNNGTG	1 cut(s)	701
Alw21I	GWGCWC	1 cut(s)	1263
Alw26I	GTCTC	4 cut(s)	123, 469, 1025, 1166
AlwNI	CAGNNNCTG	1 cut(s)	673
Aor13HI	TCCGGA	1 cut(s)	742
AoxI	GGCC	5 cut(s)	189, 363, 381, 485, 564
ApeKI	GCWGC	2 cut(s)	796, 1289
ApoI	RAATTY	2 cut(s)	955, 1323
ArsI	GACNNNNNNTTYG	4 cut(s)	414, 446, 947, 979
Asp700I	GAANNNNTTC	1 cut(s)	1233
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	4 cut(s)	364, 382, 564, 583
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	6 cut(s)	18, 226, 461, 703, 844, 1231
AvaII	GGWCC	1 cut(s)	583
BanI	GGYRCC	1 cut(s)	529
BanII	GRGCYC	1 cut(s)	1263
Bbv12I	GWGCWC	1 cut(s)	1263
BbvI	GCAGC	2 cut(s)	783, 1301
BceAI	ACGGC	1 cut(s)	373
BciT130I	CCWGG	1 cut(s)	1194
BciVI	GTATCC	1 cut(s)	529
BclI	TGATCA	3 cut(s)	723, 994, 1314
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	4 cut(s)	123, 469, 1025, 1166
BfaI	CTAG	4 cut(s)	126, 762, 1269, 1332
BfoI	RGCGCY	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	679
BfuI	GTATCC	1 cut(s)	529
BglII	AGATCT	1 cut(s)	177
BisI	GCNGC	3 cut(s)	192, 797, 1290
BlsI	GCNGC	3 cut(s)	193, 798, 1291
Bme1390I	CCNGG	2 cut(s)	326, 1194
Bme18I	GGWCC	1 cut(s)	583
BmgT120I	GGNCC	4 cut(s)	364, 382, 564, 583
BmiI	GGNNCC	3 cut(s)	531, 584, 1161
BmrFI	CCNGG	2 cut(s)	326, 1194
BmsI	GCATC	4 cut(s)	654, 898, 944, 993
BpmI	CTGGAG	1 cut(s)	734
BpuEI	CTTGAG	4 cut(s)	230, 284, 944, 1247
BpuMI	CCSGG	1 cut(s)	326
BsaHI	GRCGYC	2 cut(s)	510, 530
BsaI	GGTCTC	2 cut(s)	123, 469
BsaJI	CCNNGG	3 cut(s)	324, 520, 1193
BsaWI	WCCGGW	3 cut(s)	444, 471, 742
BsaXI	ACNNNNNCTCC	8 cut(s)	30, 60, 206, 236, 305, 335, 1163, 1193
Bsc4I	CCNNNNNNNGG	4 cut(s)	325, 523, 526, 1081
Bse3DI	GCAATG	1 cut(s)	1105
BseAI	TCCGGA	1 cut(s)	742
BseBI	CCWGG	1 cut(s)	1194
BseDI	CCNNGG	3 cut(s)	324, 520, 1193
BseGI	GGATG	6 cut(s)	240, 646, 831, 913, 935, 1008
BseLI	CCNNNNNNNGG	4 cut(s)	325, 523, 526, 1081
BseMI	GCAATG	1 cut(s)	1105
BseMII	CTCAG	1 cut(s)	601
BseRI	GAGGAG	6 cut(s)	59, 155, 214, 278, 281, 1151
BseXI	GCAGC	2 cut(s)	783, 1301
BsgI	GTGCAG	1 cut(s)	697
BshFI	GGCC	5 cut(s)	191, 365, 383, 487, 566
BshNI	GGYRCC	1 cut(s)	529
BsiHKAI	GWGCWC	1 cut(s)	1263
BsiSI	CCGG	7 cut(s)	326, 445, 472, 484, 533, 638, 743
BslFI	GGGAC	2 cut(s)	289, 596
BslI	CCNNNNNNNGG	4 cut(s)	325, 523, 526, 1081
BsmAI	GTCTC	4 cut(s)	123, 469, 1025, 1166
BsmFI	GGGAC	2 cut(s)	289, 596
BsnI	GGCC	5 cut(s)	191, 365, 383, 487, 566
Bso31I	GGTCTC	2 cut(s)	123, 469
Bsp1286I	GDGCHC	1 cut(s)	1263
Bsp13I	TCCGGA	1 cut(s)	742
Bsp143I	GATC	4 cut(s)	177, 723, 994, 1314
BspACI	CCGC	6 cut(s)	192, 196, 256, 295, 517, 1163
BspANI	GGCC	5 cut(s)	191, 365, 383, 487, 566
BspCNI	CTCAG	1 cut(s)	600
BspEI	TCCGGA	1 cut(s)	742
BspLI	GGNNCC	3 cut(s)	531, 584, 1161
BspMI	ACCTGC	1 cut(s)	679
BspT107I	GGYRCC	1 cut(s)	529
BspTNI	GGTCTC	2 cut(s)	123, 469
BsrBI	CCGCTC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	1105
BssECI	CCNNGG	3 cut(s)	324, 520, 1193
BssMI	GATC	4 cut(s)	177, 723, 994, 1314
BssNI	GRCGYC	2 cut(s)	510, 530
Bst2UI	CCWGG	1 cut(s)	1194
Bst4CI	ACNGT	2 cut(s)	37, 871
Bst6I	CTCTTC	2 cut(s)	338, 1200
BstACI	GRCGYC	2 cut(s)	510, 530
BstAPI	GCANNNNNTGC	1 cut(s)	908
BstC8I	GCNNGC	5 cut(s)	196, 252, 256, 489, 950
BstDEI	CTNAG	2 cut(s)	587, 1145
BstDSI	CCRYGG	1 cut(s)	520
BstF5I	GGATG	6 cut(s)	240, 646, 831, 913, 935, 1008
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	4 cut(s)	180, 726, 997, 1317
BstMAI	GTCTC	4 cut(s)	123, 469, 1025, 1166
BstMBI	GATC	4 cut(s)	177, 723, 994, 1314
BstMWI	GCNNNNNNNGC	1 cut(s)	908
BstNI	CCWGG	1 cut(s)	1194
BstSCI	CCNGG	2 cut(s)	324, 1192
BstV1I	GCAGC	2 cut(s)	783, 1301
BstX2I	RGATCY	1 cut(s)	177
BstXI	CCANNNNNNTGG	1 cut(s)	1282
BstYI	RGATCY	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	5 cut(s)	191, 365, 383, 487, 566
BtgI	CCRYGG	1 cut(s)	520
BtgZI	GCGATG	1 cut(s)	127
BtsCI	GGATG	6 cut(s)	240, 646, 831, 913, 935, 1008
BtsI	GCAGTG	2 cut(s)	696, 909
BtsIMutI	CAGTG	3 cut(s)	595, 696, 909
BveI	ACCTGC	1 cut(s)	679
Cac8I	GCNNGC	5 cut(s)	196, 252, 256, 489, 950
CaiI	CAGNNNCTG	1 cut(s)	673
CfoI	GCGC	1 cut(s)	532
Cfr13I	GGNCC	4 cut(s)	364, 382, 564, 583
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	4 cut(s)	104, 1076, 1151, 1328
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	2 cut(s)	587, 1145
DinI	GGCGCC	1 cut(s)	531
DpnI	GATC	4 cut(s)	179, 725, 996, 1316
DpnII	GATC	4 cut(s)	177, 723, 994, 1314
DraIII	CACNNNGTG	1 cut(s)	526
DrdI	GACNNNNNNGTC	1 cut(s)	461
DseDI	GACNNNNNNGTC	1 cut(s)	461
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	2 cut(s)	338, 1200
EarI	CTCTTC	2 cut(s)	338, 1200
EciI	GGCGGA	1 cut(s)	284
Ecl136II	GAGCTC	1 cut(s)	1261
Eco24I	GRGCYC	1 cut(s)	1263
Eco31I	GGTCTC	2 cut(s)	123, 469
Eco32I	GATATC	1 cut(s)	1041
Eco47I	GGWCC	1 cut(s)	583
Eco53kI	GAGCTC	1 cut(s)	1261
Eco57I	CTGAAG	1 cut(s)	1259
EcoICRI	GAGCTC	1 cut(s)	1261
EcoO109I	RGGNCCY	3 cut(s)	382, 564, 583
EcoRII	CCWGG	1 cut(s)	1192
EcoRV	GATATC	1 cut(s)	1041
EcoT38I	GRGCYC	1 cut(s)	1263
EgeI	GGCGCC	1 cut(s)	531
EheI	GGCGCC	1 cut(s)	531
FaeI	CATG	4 cut(s)	107, 1079, 1154, 1331
FalI	AAGNNNNNCTT	1 cut(s)	1333
FaqI	GGGAC	2 cut(s)	289, 596
FatI	CATG	4 cut(s)	103, 1075, 1150, 1327
FauI	CCCGC	2 cut(s)	203, 263
FbaI	TGATCA	3 cut(s)	723, 994, 1314
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	3 cut(s)	192, 797, 1290
FokI	GGATG	6 cut(s)	227, 653, 838, 920, 922, 1015
FriOI	GRGCYC	1 cut(s)	1263
Fsp4HI	GCNGC	3 cut(s)	192, 797, 1290
FspBI	CTAG	4 cut(s)	126, 762, 1269, 1332
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	3 cut(s)	192, 797, 1290
GsuI	CTGGAG	1 cut(s)	734
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	5 cut(s)	191, 365, 383, 487, 566
HapII	CCGG	7 cut(s)	326, 445, 472, 484, 533, 638, 743
HgaI	GACGC	1 cut(s)	518
HhaI	GCGC	1 cut(s)	532
Hin1I	GRCGYC	2 cut(s)	510, 530
Hin1II	CATG	4 cut(s)	107, 1079, 1154, 1331
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HincII	GTYRAC	2 cut(s)	280, 1182
HindII	GTYRAC	2 cut(s)	280, 1182
HindIII	AAGCTT	2 cut(s)	812, 1119
HinfI	GANTC	4 cut(s)	129, 448, 647, 746
HpaII	CCGG	7 cut(s)	326, 445, 472, 484, 533, 638, 743
HphI	GGTGA	6 cut(s)	18, 226, 461, 703, 844, 1231
Hpy166II	GTNNAC	4 cut(s)	26, 280, 694, 1182
Hpy188I	TCNGA	5 cut(s)	157, 558, 657, 994, 1239
Hpy188III	TCNNGA	5 cut(s)	126, 452, 713, 743, 923
Hpy8I	GTNNAC	4 cut(s)	26, 280, 694, 1182
Hpy99I	CGWCG	2 cut(s)	281, 500
HpyCH4III	ACNGT	2 cut(s)	37, 871
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	6 cut(s)	420, 596, 667, 678, 859, 1098
HpyF10VI	GCNNNNNNNGC	1 cut(s)	908
HpyF3I	CTNAG	2 cut(s)	587, 1145
HpySE526I	ACGT	1 cut(s)	498
Hsp92I	GRCGYC	2 cut(s)	510, 530
Hsp92II	CATG	4 cut(s)	107, 1079, 1154, 1331
HspAI	GCGC	1 cut(s)	530
KasI	GGCGCC	1 cut(s)	529
Kpn2I	TCCGGA	1 cut(s)	742
Ksp22I	TGATCA	3 cut(s)	723, 994, 1314
Kzo9I	GATC	4 cut(s)	177, 723, 994, 1314
LmnI	GCTCC	1 cut(s)	263
Lsp1109I	GCAGC	2 cut(s)	783, 1301
LweI	GCATC	4 cut(s)	654, 898, 944, 993
MaeI	CTAG	4 cut(s)	126, 762, 1269, 1332
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	2 cut(s)	212, 842
MalI	GATC	4 cut(s)	179, 725, 996, 1316
MbiI	CCGCTC	1 cut(s)	258
MboI	GATC	4 cut(s)	177, 723, 994, 1314
MboII	GAAGA	8 cut(s)	70, 73, 172, 325, 799, 1030, 1217, 1241
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	1263
MluCI	AATT	3 cut(s)	410, 955, 1323
Mly113I	GGCGCC	1 cut(s)	530
MlyI	GAGTC	2 cut(s)	138, 656
MmeI	TCCRAC	1 cut(s)	180
MroI	TCCGGA	1 cut(s)	742
MroXI	GAANNNNTTC	1 cut(s)	1233
MseI	TTAA	1 cut(s)	1086
MslI	CAYNNNNRTG	2 cut(s)	557, 701
MspA1I	CMGCKG	1 cut(s)	796
MspI	CCGG	7 cut(s)	326, 445, 472, 484, 533, 638, 743
MspR9I	CCNGG	2 cut(s)	326, 1194
MvaI	CCWGG	1 cut(s)	1194
MwoI	GCNNNNNNNGC	1 cut(s)	908
NarI	GGCGCC	1 cut(s)	530
NciI	CCSGG	1 cut(s)	326
NdeII	GATC	4 cut(s)	177, 723, 994, 1314
NlaIII	CATG	4 cut(s)	107, 1079, 1154, 1331
NlaIV	GGNNCC	3 cut(s)	531, 584, 1161
NmuCI	GTSAC	1 cut(s)	212
OliI	CACNNNNGTG	1 cut(s)	701
PaqCI	CACCTGC	1 cut(s)	679
PdmI	GAANNNNTTC	1 cut(s)	1233
PfeI	GAWTC	2 cut(s)	448, 746
PflMI	CCANNNNNTGG	2 cut(s)	526, 1081
PkrI	GCNGC	3 cut(s)	193, 798, 1291
PleI	GAGTC	2 cut(s)	137, 655
PluTI	GGCGCC	1 cut(s)	533
PpsI	GAGTC	2 cut(s)	137, 655
PpuMI	RGGWCCY	1 cut(s)	583
Psp124BI	GAGCTC	1 cut(s)	1263
Psp5II	RGGWCCY	1 cut(s)	583
Psp6I	CCWGG	1 cut(s)	1192
PspGI	CCWGG	1 cut(s)	1192
PspN4I	GGNNCC	3 cut(s)	531, 584, 1161
PspPI	GGNCC	4 cut(s)	364, 382, 564, 583
PspPPI	RGGWCCY	1 cut(s)	583
PstNI	CAGNNNCTG	1 cut(s)	673
PsuI	RGATCY	1 cut(s)	177
PvuII	CAGCTG	1 cut(s)	796
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
RseI	CAYNNNNRTG	2 cut(s)	557, 701
SacI	GAGCTC	1 cut(s)	1263
SalI	GTCGAC	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	1086
SatI	GCNGC	3 cut(s)	192, 797, 1290
Sau3AI	GATC	4 cut(s)	177, 723, 994, 1314
Sau96I	GGNCC	4 cut(s)	364, 382, 564, 583
SchI	GAGTC	2 cut(s)	138, 656
ScrFI	CCNGG	2 cut(s)	326, 1194
SduI	GDGCHC	1 cut(s)	1263
SfaNI	GCATC	4 cut(s)	654, 898, 944, 993
SfoI	GGCGCC	1 cut(s)	531
SinI	GGWCC	1 cut(s)	583
SmiMI	CAYNNNNRTG	2 cut(s)	557, 701
SmlI	CTYRAG	4 cut(s)	245, 299, 923, 1262
SmoI	CTYRAG	4 cut(s)	245, 299, 923, 1262
Sse9I	AATT	3 cut(s)	410, 955, 1323
SsiI	CCGC	6 cut(s)	192, 196, 256, 295, 517, 1163
SspDI	GGCGCC	1 cut(s)	529
SspMI	CTAG	4 cut(s)	126, 762, 1269, 1332
SstI	GAGCTC	1 cut(s)	1263
StyD4I	CCNGG	2 cut(s)	324, 1192
TaaI	ACNGT	2 cut(s)	37, 871
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	6 cut(s)	183, 279, 414, 453, 495, 1113
TasI	AATT	3 cut(s)	410, 955, 1323
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	2 cut(s)	448, 746
Tru1I	TTAA	1 cut(s)	1086
Tru9I	TTAA	1 cut(s)	1086
TscAI	CASTG	3 cut(s)	595, 703, 909
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	2 cut(s)	796, 1289
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	4 cut(s)	120, 842, 1265, 1316
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	3 cut(s)	595, 703, 909
Van91I	CCANNNNNTGG	2 cut(s)	526, 1081
VpaK11BI	GGWCC	1 cut(s)	583
XapI	RAATTY	2 cut(s)	955, 1323
XbaI	TCTAGA	1 cut(s)	125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	1233
XspI	CTAG	4 cut(s)	126, 762, 1269, 1332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.