Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0011389

Physical Location & Seq

Genomic Coordinates Reverse (-)

51536777 .. 51538156

Gene Structure 1380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG291400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGATGCTTCTACTCTCTCTGCGTTCACCCAAAACCGTACAAACCCTCCCTTCAAAAACCCCACCACTCTTCTCCTTCTTCTTCCACACCTCCCAACCCCAACCCCACCACCCCCCCTCACAAACCCACCATGAAATCATTGGGTCTCCTTCTAGAGTCCAAAAGCTCATCGCTTCCCAATCCGACCCTCTACTCGCCAAAGAGATCTTCGACTTCGCCGCCCGCCACCCCCATTTCCGTCACTCCTACTCCTCCTACTTCACCCTCATCCTCAAGCTCGCCCGCTCCCACTACTTCTCTCTCGTCGACCACCTCCTCCTCCGCCTCAGGTCCCAAACCTACTCCCCCTCCCCGGCTCTCTTCTCCCACCTCATCAAAATCTACGGCGAGGCCCATTTACCCCAGAAGGCCCTCAAAACCTTCTACACAATGTTCCAATTCGACTGCAAACCCTCTGTCAAGCACCTCAACCGGATTCTCGACATTCTGGTCTCTCACCGGAACTTCCTCCGGCCGGCTTTCGACGTTTTCAAGGACGCCCACCGCCACGGGGTGGCGCCGGATACTAAATCCTACAACATTCTGATGAGGGCCTTCTGCTTGAATGGGGACCTCAGTGTTGCGTACCACCTGTTCAACAAAATGTTTGAGAGAGAGGTTGTGCCGGATGTGGAGTCGTATCGGATTTTGATGCAGGGGCTGTGCAGGAAGGGGCAGGTGAACACTGCTGTGGATTTTCTGGAGGATATGATCAACAAAGGGTTCGTTCCGGATTCGTTGAGTTATACTAGCTTGTTGAATAGCTTGTGTAGGAAGAAACAGCTGCGGGAGGCGTATAAGCTTCTTTGTAGGATGAAGGTGAAGGGGTGTAACCCTGACATTGTGCATTACAATACTGTGATATTGGGGTTTTGTAGAGAAGGGAGGGCAGTGGATGCTTGTAAGGTTCTTGAGGATATGGCATCCAATGGGTGCTTGCCGAATTTGGTGTCGTATAGGACTTTGGTTAGTGGGTTGTGTGATCAGGGGATGCTTGATGAGGCGAAGAACTATATGGAGACGATGATGTCAAAGGGGTTTTCTCCACATTTTTCGGTTATCCATTCTTTGGTTAAGGGGTTCTGCAATGTGGGTAGGGTCGAGGAAGCTTGTGGAGTTATGGAGGAGATACTAAGGCATGGGGAGGTTCCGCATAGGGAGACTTGGTTGACAATAGTTCCGGGGATATGCGAAGAGGTTGAGCTGGTGAGAACAGAAGAAGTTCTGAAAGAAATAATGAAGGTAGAGATCAAGCCTAGCACCAGAATAGTGGAGGCAGCTTTTGGATTGGAGAACTACTTGATCAAAAAAATTCATGCTAGTAAATCAAGGAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

459

Amino Acids

52.47

Weight (kDa)

9.08

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	94 - 214	2.2e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	136 - 267	6.2e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	151 - 200	6e-07	PPR repeat family
PPR_3	PF13812	176 - 232	3.5e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	184 - 215	1.1e-07	PPR repeat
PPR_2	PF13041	187 - 236	2e-14	PPR repeat family
PPR_1	PF12854	219 - 250	2e-08	PPR repeat
PPR_2	PF13041	229 - 271	2.3e-12	PPR repeat family
PPR_3	PF13812	247 - 305	8.8e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	253 - 286	1.6e-08	PPR repeat
PPR_2	PF13041	261 - 294	1.2e-08	PPR repeat family
PPR	PF01535	261 - 290	5.3e-07	PPR repeat
PPR_long	PF17177	273 - 405	2e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	288 - 320	1.2e-11	PPR repeat
PPR_2	PF13041	292 - 341	2.1e-15	PPR repeat family
PPR	PF01535	295 - 325	6.5e-06	PPR repeat
PPR_1	PF12854	323 - 355	7.1e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01400
fragaria_vesca	FvH4_7g17740 FvH4_7g17740 FvH4_7g17740
malus_domestica	MD01G1088700.v1.1
prunus_persica	Prupe.2G196300_v2.0.a1
pyrus_communis	pycom01g11310
rosa_chinensis	RchiOBHm_Chr1g0361141
rosa_laevigata	RLG00000027746
rosa_multiflora	Rmu_sc0002863.1_g000035 Rmu_sc0020096.1_g000003
rosa_roxburghii	Rroxscaffold_4G00295390
rosa_rugosa	Rorug01G0286000 Rorug02G0035000
rosa_samantha	Rh1AG297500 Rh1BG261600 Rh1CG278900 Rh1DG291400
rosa_wichuraiana	Rw1G026270 Rw1G026900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	706
AasI	GACNNNNNNGTC	2 cut(s)	488, 1066
Acc36I	ACCTGC	1 cut(s)	706
AccB1I	GGYRCC	1 cut(s)	556
AccB7I	CCANNNNNTGG	2 cut(s)	553, 1108
AccBSI	CCGCTC	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	306
AccIII	TCCGGA	1 cut(s)	769
AciI	CCGC	7 cut(s)	219, 223, 283, 322, 544, 826, 1190
AcoI	YGGCCR	1 cut(s)	512
AcsI	RAATTY	2 cut(s)	982, 1350
AcyI	GRCGYC	2 cut(s)	537, 557
AdeI	CACNNNGTG	1 cut(s)	553
AfaI	GTAC	2 cut(s)	39, 626
AfiI	CCNNNNNNNGG	5 cut(s)	352, 514, 550, 553, 1108
AgsI	TTSAA	5 cut(s)	54, 532, 604, 637, 799
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AleI	CACNNNNGTG	1 cut(s)	728
Alw26I	GTCTC	4 cut(s)	150, 496, 1052, 1193
AlwNI	CAGNNNCTG	1 cut(s)	700
Aor13HI	TCCGGA	1 cut(s)	769
AoxI	GGCC	4 cut(s)	390, 408, 512, 591
ApeKI	GCWGC	2 cut(s)	823, 1316
ApoI	RAATTY	2 cut(s)	982, 1350
ArsI	GACNNNNNNTTYG	4 cut(s)	441, 473, 974, 1006
Asp700I	GAANNNNTTC	1 cut(s)	1260
AspLEI	GCGC	1 cut(s)	559
AspS9I	GGNCC	5 cut(s)	330, 391, 409, 591, 610
AsuC2I	CCSGG	2 cut(s)	353, 1221
AsuHPI	GGTGA	6 cut(s)	18, 253, 488, 730, 871, 1258
AvaII	GGWCC	2 cut(s)	330, 610
AxyI	CCTNAGG	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	556
BbvI	GCAGC	2 cut(s)	810, 1328
BceAI	ACGGC	1 cut(s)	400
BciVI	GTATCC	1 cut(s)	556
BclI	TGATCA	3 cut(s)	750, 1021, 1341
BcnI	CCSGG	2 cut(s)	353, 1221
BcoDI	GTCTC	4 cut(s)	150, 496, 1052, 1193
BfaI	CTAG	4 cut(s)	153, 789, 1296, 1359
BfoI	RGCGCY	1 cut(s)	560
BfuAI	ACCTGC	1 cut(s)	706
BfuI	GTATCC	1 cut(s)	556
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	3 cut(s)	219, 824, 1317
BlsI	GCNGC	3 cut(s)	220, 825, 1318
Bme1390I	CCNGG	2 cut(s)	353, 1221
Bme18I	GGWCC	2 cut(s)	330, 610
BmgT120I	GGNCC	5 cut(s)	330, 391, 409, 591, 610
BmiI	GGNNCC	4 cut(s)	332, 558, 611, 1188
BmrFI	CCNGG	2 cut(s)	353, 1221
BmsI	GCATC	4 cut(s)	681, 925, 971, 1020
BpmI	CTGGAG	1 cut(s)	761
BpuEI	CTTGAG	2 cut(s)	257, 971
BpuMI	CCSGG	2 cut(s)	353, 1221
BsaHI	GRCGYC	2 cut(s)	537, 557
BsaI	GGTCTC	2 cut(s)	150, 496
BsaJI	CCNNGG	3 cut(s)	351, 547, 1220
BsaWI	WCCGGW	3 cut(s)	471, 498, 769
BsaXI	ACNNNNNCTCC	8 cut(s)	30, 60, 233, 263, 332, 362, 1190, 1220
Bsc4I	CCNNNNNNNGG	5 cut(s)	352, 514, 550, 553, 1108
Bse118I	RCCGGY	1 cut(s)	514
Bse21I	CCTNAGG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	1132
BseAI	TCCGGA	1 cut(s)	769
BseDI	CCNNGG	3 cut(s)	351, 547, 1220
BseGI	GGATG	6 cut(s)	267, 673, 858, 940, 962, 1035
BseLI	CCNNNNNNNGG	5 cut(s)	352, 514, 550, 553, 1108
BseMI	GCAATG	1 cut(s)	1132
BseMII	CTCAG	2 cut(s)	340, 628
BseRI	GAGGAG	4 cut(s)	241, 305, 308, 1178
BseX3I	CGGCCG	1 cut(s)	512
BseXI	GCAGC	2 cut(s)	810, 1328
BsgI	GTGCAG	1 cut(s)	724
Bsh1285I	CGRYCG	1 cut(s)	515
BshFI	GGCC	4 cut(s)	392, 410, 514, 593
BshNI	GGYRCC	1 cut(s)	556
BsiEI	CGRYCG	1 cut(s)	515
BsiSI	CCGG	9 cut(s)	353, 472, 499, 511, 515, 560, 665, 770, 1220
BslFI	GGGAC	2 cut(s)	316, 623
BslI	CCNNNNNNNGG	5 cut(s)	352, 514, 550, 553, 1108
BsmAI	GTCTC	4 cut(s)	150, 496, 1052, 1193
BsmBI	CGTCTC	1 cut(s)	1052
BsmFI	GGGAC	2 cut(s)	316, 623
BsnI	GGCC	4 cut(s)	392, 410, 514, 593
Bso31I	GGTCTC	2 cut(s)	150, 496
Bsp13I	TCCGGA	1 cut(s)	769
Bsp143I	GATC	5 cut(s)	204, 750, 1021, 1287, 1341
BspACI	CCGC	7 cut(s)	219, 223, 283, 322, 544, 826, 1190
BspANI	GGCC	4 cut(s)	392, 410, 514, 593
BspCNI	CTCAG	2 cut(s)	339, 627
BspEI	TCCGGA	1 cut(s)	769
BspLI	GGNNCC	4 cut(s)	332, 558, 611, 1188
BspMI	ACCTGC	1 cut(s)	706
BspT107I	GGYRCC	1 cut(s)	556
BspTNI	GGTCTC	2 cut(s)	150, 496
BsrBI	CCGCTC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	1132
BsrFI	RCCGGY	1 cut(s)	514
BssAI	RCCGGY	1 cut(s)	514
BssECI	CCNNGG	3 cut(s)	351, 547, 1220
BssMI	GATC	5 cut(s)	204, 750, 1021, 1287, 1341
BssNI	GRCGYC	2 cut(s)	537, 557
Bst4CI	ACNGT	2 cut(s)	37, 898
Bst6I	CTCTTC	3 cut(s)	74, 365, 1227
BstACI	GRCGYC	2 cut(s)	537, 557
BstAPI	GCANNNNNTGC	1 cut(s)	935
BstC8I	GCNNGC	5 cut(s)	223, 279, 283, 516, 977
BstDEI	CTNAG	3 cut(s)	326, 614, 1172
BstDSI	CCRYGG	1 cut(s)	547
BstF5I	GGATG	6 cut(s)	267, 673, 858, 940, 962, 1035
BstH2I	RGCGCY	1 cut(s)	560
BstHHI	GCGC	1 cut(s)	559
BstKTI	GATC	5 cut(s)	207, 753, 1024, 1290, 1344
BstMAI	GTCTC	4 cut(s)	150, 496, 1052, 1193
BstMBI	GATC	5 cut(s)	204, 750, 1021, 1287, 1341
BstMCI	CGRYCG	1 cut(s)	515
BstMWI	GCNNNNNNNGC	1 cut(s)	935
BstSCI	CCNGG	2 cut(s)	351, 1219
BstV1I	GCAGC	2 cut(s)	810, 1328
BstX2I	RGATCY	1 cut(s)	204
BstXI	CCANNNNNNTGG	1 cut(s)	1309
BstYI	RGATCY	1 cut(s)	204
BstZI	CGGCCG	1 cut(s)	512
Bsu36I	CCTNAGG	1 cut(s)	326
BsuI	GTATCC	1 cut(s)	556
BsuRI	GGCC	4 cut(s)	392, 410, 514, 593
BtgI	CCRYGG	1 cut(s)	547
BtgZI	GCGATG	1 cut(s)	154
BtsCI	GGATG	6 cut(s)	267, 673, 858, 940, 962, 1035
BtsI	GCAGTG	2 cut(s)	723, 936
BtsIMutI	CAGTG	3 cut(s)	622, 723, 936
BveI	ACCTGC	1 cut(s)	706
Cac8I	GCNNGC	5 cut(s)	223, 279, 283, 516, 977
CaiI	CAGNNNCTG	1 cut(s)	700
CfoI	GCGC	1 cut(s)	559
Cfr10I	RCCGGY	1 cut(s)	514
Cfr13I	GGNCC	5 cut(s)	330, 391, 409, 591, 610
CseI	GACGC	1 cut(s)	545
Csp6I	GTAC	2 cut(s)	38, 625
CviAII	CATG	3 cut(s)	131, 1178, 1355
CviQI	GTAC	2 cut(s)	38, 625
DdeI	CTNAG	3 cut(s)	326, 614, 1172
DinI	GGCGCC	1 cut(s)	558
DpnI	GATC	5 cut(s)	206, 752, 1023, 1289, 1343
DpnII	GATC	5 cut(s)	204, 750, 1021, 1287, 1341
DraIII	CACNNNGTG	1 cut(s)	553
DrdI	GACNNNNNNGTC	2 cut(s)	488, 1066
DseDI	GACNNNNNNGTC	2 cut(s)	488, 1066
EaeI	YGGCCR	1 cut(s)	512
EagI	CGGCCG	1 cut(s)	512
Eam1104I	CTCTTC	3 cut(s)	74, 365, 1227
EarI	CTCTTC	3 cut(s)	74, 365, 1227
EciI	GGCGGA	1 cut(s)	311
EclXI	CGGCCG	1 cut(s)	512
Eco31I	GGTCTC	2 cut(s)	150, 496
Eco47I	GGWCC	2 cut(s)	330, 610
Eco52I	CGGCCG	1 cut(s)	512
Eco81I	CCTNAGG	1 cut(s)	326
EcoO109I	RGGNCCY	4 cut(s)	330, 409, 591, 610
EgeI	GGCGCC	1 cut(s)	558
EheI	GGCGCC	1 cut(s)	558
Esp3I	CGTCTC	1 cut(s)	1052
FaeI	CATG	3 cut(s)	134, 1181, 1358
FalI	AAGNNNNNCTT	1 cut(s)	1360
FaqI	GGGAC	2 cut(s)	316, 623
FatI	CATG	3 cut(s)	130, 1177, 1354
FauI	CCCGC	3 cut(s)	230, 290, 819
FbaI	TGATCA	3 cut(s)	750, 1021, 1341
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	3 cut(s)	219, 824, 1317
FokI	GGATG	6 cut(s)	254, 680, 865, 947, 949, 1042
Fsp4HI	GCNGC	3 cut(s)	219, 824, 1317
FspBI	CTAG	4 cut(s)	153, 789, 1296, 1359
GlaI	GCGC	1 cut(s)	558
GluI	GCNGC	3 cut(s)	219, 824, 1317
GsuI	CTGGAG	1 cut(s)	761
HaeII	RGCGCY	1 cut(s)	560
HaeIII	GGCC	4 cut(s)	392, 410, 514, 593
HapII	CCGG	9 cut(s)	353, 472, 499, 511, 515, 560, 665, 770, 1220
HgaI	GACGC	1 cut(s)	545
HhaI	GCGC	1 cut(s)	559
Hin1I	GRCGYC	2 cut(s)	537, 557
Hin1II	CATG	3 cut(s)	134, 1181, 1358
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HincII	GTYRAC	2 cut(s)	307, 1209
HindII	GTYRAC	2 cut(s)	307, 1209
HindIII	AAGCTT	2 cut(s)	839, 1146
HinfI	GANTC	4 cut(s)	156, 475, 674, 773
HpaII	CCGG	9 cut(s)	353, 472, 499, 511, 515, 560, 665, 770, 1220
HphI	GGTGA	6 cut(s)	18, 253, 488, 730, 871, 1258
Hpy166II	GTNNAC	4 cut(s)	26, 307, 721, 1209
Hpy188I	TCNGA	4 cut(s)	184, 585, 684, 1266
Hpy188III	TCNNGA	5 cut(s)	153, 479, 740, 770, 950
Hpy8I	GTNNAC	4 cut(s)	26, 307, 721, 1209
Hpy99I	CGWCG	2 cut(s)	308, 527
HpyCH4III	ACNGT	2 cut(s)	37, 898
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	5 cut(s)	447, 694, 705, 886, 1125
HpyF10VI	GCNNNNNNNGC	1 cut(s)	935
HpyF3I	CTNAG	3 cut(s)	326, 614, 1172
HpySE526I	ACGT	1 cut(s)	525
Hsp92I	GRCGYC	2 cut(s)	537, 557
Hsp92II	CATG	3 cut(s)	134, 1181, 1358
HspAI	GCGC	1 cut(s)	557
KasI	GGCGCC	1 cut(s)	556
Kpn2I	TCCGGA	1 cut(s)	769
KroI	GCCGGC	1 cut(s)	514
KroNI	GCCGGC	1 cut(s)	516
Ksp22I	TGATCA	3 cut(s)	750, 1021, 1341
Kzo9I	GATC	5 cut(s)	204, 750, 1021, 1287, 1341
LmnI	GCTCC	1 cut(s)	290
Lsp1109I	GCAGC	2 cut(s)	810, 1328
LweI	GCATC	4 cut(s)	681, 925, 971, 1020
MaeI	CTAG	4 cut(s)	153, 789, 1296, 1359
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	2 cut(s)	239, 869
MalI	GATC	5 cut(s)	206, 752, 1023, 1289, 1343
MbiI	CCGCTC	1 cut(s)	285
MboI	GATC	5 cut(s)	204, 750, 1021, 1287, 1341
MboII	GAAGA	9 cut(s)	61, 70, 73, 199, 352, 826, 1057, 1244, 1268
MflI	RGATCY	1 cut(s)	204
MluCI	AATT	3 cut(s)	437, 982, 1350
Mly113I	GGCGCC	1 cut(s)	557
MlyI	GAGTC	2 cut(s)	165, 683
MmeI	TCCRAC	1 cut(s)	207
MroI	TCCGGA	1 cut(s)	769
MroNI	GCCGGC	1 cut(s)	514
MroXI	GAANNNNTTC	1 cut(s)	1260
MseI	TTAA	1 cut(s)	1113
MslI	CAYNNNNRTG	2 cut(s)	584, 728
MspA1I	CMGCKG	1 cut(s)	823
MspI	CCGG	9 cut(s)	353, 472, 499, 511, 515, 560, 665, 770, 1220
MspR9I	CCNGG	2 cut(s)	353, 1221
MwoI	GCNNNNNNNGC	1 cut(s)	935
NaeI	GCCGGC	1 cut(s)	516
NarI	GGCGCC	1 cut(s)	557
NciI	CCSGG	2 cut(s)	353, 1221
NdeII	GATC	5 cut(s)	204, 750, 1021, 1287, 1341
NgoMIV	GCCGGC	1 cut(s)	514
NlaIII	CATG	3 cut(s)	134, 1181, 1358
NlaIV	GGNNCC	4 cut(s)	332, 558, 611, 1188
NmuCI	GTSAC	1 cut(s)	239
OliI	CACNNNNGTG	1 cut(s)	728
PaqCI	CACCTGC	1 cut(s)	706
PdiI	GCCGGC	1 cut(s)	516
PdmI	GAANNNNTTC	1 cut(s)	1260
PfeI	GAWTC	2 cut(s)	475, 773
PflMI	CCANNNNNTGG	2 cut(s)	553, 1108
PkrI	GCNGC	3 cut(s)	220, 825, 1318
PleI	GAGTC	2 cut(s)	164, 682
PluTI	GGCGCC	1 cut(s)	560
PpsI	GAGTC	2 cut(s)	164, 682
PpuMI	RGGWCCY	2 cut(s)	330, 610
Psp5II	RGGWCCY	2 cut(s)	330, 610
PspN4I	GGNNCC	4 cut(s)	332, 558, 611, 1188
PspPI	GGNCC	5 cut(s)	330, 391, 409, 591, 610
PspPPI	RGGWCCY	2 cut(s)	330, 610
PsrI	GAACNNNNNNTAC	2 cut(s)	617, 649
PstNI	CAGNNNCTG	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	204
PvuII	CAGCTG	1 cut(s)	823
RsaI	GTAC	2 cut(s)	39, 626
RsaNI	GTAC	2 cut(s)	38, 625
RseI	CAYNNNNRTG	2 cut(s)	584, 728
SalI	GTCGAC	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	1113
SatI	GCNGC	3 cut(s)	219, 824, 1317
Sau3AI	GATC	5 cut(s)	204, 750, 1021, 1287, 1341
Sau96I	GGNCC	5 cut(s)	330, 391, 409, 591, 610
SchI	GAGTC	2 cut(s)	165, 683
ScrFI	CCNGG	2 cut(s)	353, 1221
SfaNI	GCATC	4 cut(s)	681, 925, 971, 1020
SfoI	GGCGCC	1 cut(s)	558
SinI	GGWCC	2 cut(s)	330, 610
SmiMI	CAYNNNNRTG	2 cut(s)	584, 728
SmlI	CTYRAG	2 cut(s)	272, 950
SmoI	CTYRAG	2 cut(s)	272, 950
Sse9I	AATT	3 cut(s)	437, 982, 1350
SsiI	CCGC	7 cut(s)	219, 223, 283, 322, 544, 826, 1190
SspDI	GGCGCC	1 cut(s)	556
SspMI	CTAG	4 cut(s)	153, 789, 1296, 1359
StyD4I	CCNGG	2 cut(s)	351, 1219
TaaI	ACNGT	2 cut(s)	37, 898
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	6 cut(s)	210, 306, 441, 480, 522, 1140
TasI	AATT	3 cut(s)	437, 982, 1350
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	2 cut(s)	475, 773
Tru1I	TTAA	1 cut(s)	1113
Tru9I	TTAA	1 cut(s)	1113
TscAI	CASTG	3 cut(s)	622, 730, 936
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	2 cut(s)	823, 1316
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	4 cut(s)	147, 869, 1292, 1343
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	3 cut(s)	622, 730, 936
Van91I	CCANNNNNTGG	2 cut(s)	553, 1108
VpaK11BI	GGWCC	2 cut(s)	330, 610
XapI	RAATTY	2 cut(s)	982, 1350
XbaI	TCTAGA	1 cut(s)	152
XcmI	CCANNNNNNNNNTGG	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	1260
XspI	CTAG	4 cut(s)	153, 789, 1296, 1359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.