MD01G1088700.v1.1

Pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0011389
Physical Location & Seq
Reverse (-)
20171361 .. 20172734
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1088700.v1.1.491

Sequence Viewer

Length: 1374 bp
ATGCATCTACTCTTTCGGCGCTCAGCAAAAACCGCCAGAGCCGCCACTCGCTACCTCGCGCTCCCGCCAAAAACCCCATCCTCTTCCTCCTCCTTCTTCCACTCCTCCCAACCCCGTCACCAAACGCCCGATATCGGCTCTCCTTCCAGAGTCCAAAAGCTCATCGCCTCCCAATCCGACCCTCTCCTCGCCAAAGAAATCTTCGACTACGCCGCCCGCCACCCAAATTTCCGCCACTCCTACGCCTCCTACTTCACTATCATTCTCAAGCTCGGTCGGTCCAAGTACTTCTCCCTCGTCGACGACCTCCTCCTCCGCCTCAAGTCCCAAAACTACACCGTCTCCCCCGCCCTCTTTTCCCACCTGATCAAAATCTACGGCGAAGCCAATCTGCCCCAGAAAGCCCTCCGAGTGTTCTATACCATGATGGAGTTCGATTGCAGGCCTTCCGTCAAACACCTGAACCGCATTCTTCAGATTCTCGTTTCTCACCGGAACTTTCTCCGGCCGGCGTTCGACGTCTTCAAAGACGCTCACCGTCACGGGGTGATGCCCAATACGGAATCCTACAATATACTGATGCGTGCATTTTGTTTGAACGGGGATATCAGCATTGCCTACCAACTGTTCAACAAAATGTTTGAGAGAGACCTTGTGCCGGATGTGCATTCGTATCGGATTCTGATGCAGGGGTTGTGTAGGAAGGGGCAGGTGAATACCGCGGTCGATTTCTTGGAGGATATGCTGAACAAAGGGTTCGTGCCCGATACGCTGAGCTACACCACTTTGTTGAATAGTTTGTGTAGGAAGAAGCAGCTTCGTGAGGCGTATAAGCTACTTTGTAGGATGAAGGTGAAGGGGTGCAATCCTGATATTGTGCATTATAACACTGTTATATTGGGATTATGTCGAGAAGGGCGCCCGGCGGATGCTTGTAAAGTTCTCGAGGATATGGCATCGAATGGGTGCTTGCCAAATTTGGTATCTTATCGGACTTTGGTTAGCGGGTTATGCGATCATGGGATGCTTGATGAGGCTAAGAGTTATATGGAGACAATGGTGTCAAAGGGGTTCTCACCGCATTTCTCGGTCATTCATGCTTTGGTTAAGGGGTTCTGCAATGTGGGTAGGGTTGAGGAAGCTTGTGGAGTTTTGGAGGAGGTGTTAAAGCACGGAGAGGTTCCTCATACGGATACTTGGATTACGGTGGTTCCTGGGATATGCGAAGAGATTGAGCTGGTGAGAATGGAGGAAATGCTGAGAGAGGTAATGAAGGTGGAAATTAGGCCAAACACTAGAATTGTGGAGGCAGCGTTTGGTTTGGAGGATTACTTGATCAAGAAGATACAGGCTAAGCCTAGGAGAGGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

458

Amino Acids

52.16

Weight (kDa)

9.18

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 92 - 212 2.4e-08 Fungal tetratrico peptide repeats
PPR_long PF17177 133 - 265 5.3e-09 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 149 - 198 1.6e-06 PPR repeat family
PPR_3 PF13812 174 - 230 5.8e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 182 - 213 1.9e-08 PPR repeat
PPR_2 PF13041 185 - 234 3e-15 PPR repeat family
PPR_1 PF12854 217 - 248 1e-08 PPR repeat
PPR_2 PF13041 227 - 269 1.1e-12 PPR repeat family
PPR_3 PF13812 245 - 303 2.8e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 251 - 284 2.1e-09 PPR repeat
PPR_2 PF13041 255 - 292 1.3e-10 PPR repeat family
PPR PF01535 259 - 288 5.1e-07 PPR repeat
PPR_long PF17177 270 - 401 8.4e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 286 - 318 9.8e-12 PPR repeat
PPR_2 PF13041 290 - 339 5.5e-16 PPR repeat family
PPR PF01535 293 - 323 4.5e-06 PPR repeat
PPR_1 PF12854 321 - 353 5.2e-09 PPR repeat
PPR PF01535 328 - 358 5.4e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011389)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01400
fragaria_vesca FvH4_7g17740 FvH4_7g17740 FvH4_7g17740
malus_domestica MD01G1088700.v1.1
prunus_persica Prupe.2G196300_v2.0.a1
pyrus_communis pycom01g11310
rosa_chinensis RchiOBHm_Chr1g0361141
rosa_laevigata RLG00000027746
rosa_multiflora Rmu_sc0002863.1_g000035 Rmu_sc0020096.1_g000003
rosa_roxburghii Rroxscaffold_4G00295390
rosa_rugosa Rorug01G0286000 Rorug02G0035000
rosa_samantha Rh1AG297500 Rh1BG261600 Rh1CG278900 Rh1DG291400
rosa_wichuraiana Rw1G026270 Rw1G026900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 885
AarI CACCTGC 1 cut(s) 700
AasI GACNNNNNNGTC 1 cut(s) 1060
AatII GACGTC 1 cut(s) 522
Acc36I ACCTGC 1 cut(s) 700
AccB1I GGYRCC 1 cut(s) 918
AccI GTMKAC 1 cut(s) 300
AccII CGCG 2 cut(s) 59, 722
AcoI YGGCCR 1 cut(s) 506
AcsI RAATTY 2 cut(s) 226, 976
AcuI CTGAAG 1 cut(s) 458
AcyI GRCGYC 2 cut(s) 519, 919
AdeI CACNNNGTG 1 cut(s) 547
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 4 cut(s) 134, 544, 658, 1364
AgsI TTSAA 4 cut(s) 526, 598, 631, 793
AjnI CCWGG 1 cut(s) 1213
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AluBI AGCT 7 cut(s) 160, 271, 777, 817, 835, 1142, 1237
AluI AGCT 7 cut(s) 160, 271, 777, 817, 835, 1142, 1237
Alw26I GTCTC 3 cut(s) 346, 642, 1046
Ama87I CYCGRG 1 cut(s) 944
AoxI GGCC 3 cut(s) 443, 506, 1286
ApeKI GCWGC 2 cut(s) 814, 1310
ApoI RAATTY 2 cut(s) 226, 976
AspA2I CCTAGG 1 cut(s) 1358
AspLEI GCGC 3 cut(s) 21, 61, 921
AspS9I GGNCC 1 cut(s) 279
AsuC2I CCSGG 1 cut(s) 923
AsuHPI GGTGA 8 cut(s) 110, 482, 527, 559, 724, 865, 1068, 1252
AvaI CYCGRG 1 cut(s) 944
AvaII GGWCC 1 cut(s) 279
AvrII CCTAGG 1 cut(s) 1358
BaeGI GKGCMC 1 cut(s) 765
BanI GGYRCC 1 cut(s) 918
BbsI GAAGAC 1 cut(s) 514
BbvI GCAGC 2 cut(s) 826, 1322
BccI CCATC 2 cut(s) 85, 421
BceAI ACGGC 1 cut(s) 394
BcgI CGANNNNNNTGC 2 cut(s) 656, 690
BciT130I CCWGG 1 cut(s) 1215
BciVI GTATCC 1 cut(s) 1186
BclI TGATCA 2 cut(s) 366, 1335
BcnI CCSGG 1 cut(s) 923
BcoDI GTCTC 3 cut(s) 346, 642, 1046
BfaI CTAG 2 cut(s) 1296, 1359
BfoI RGCGCY 2 cut(s) 22, 922
BfuAI ACCTGC 1 cut(s) 700
BfuI GTATCC 1 cut(s) 1186
BisI GCNGC 4 cut(s) 42, 213, 815, 1311
BlnI CCTAGG 1 cut(s) 1358
BlpI GCTNAGC 3 cut(s) 22, 773, 1353
BlsI GCNGC 4 cut(s) 43, 214, 816, 1312
BmcAI AGTACT 1 cut(s) 287
Bme1390I CCNGG 2 cut(s) 923, 1215
Bme18I GGWCC 1 cut(s) 279
BmeT110I CYCGRG 1 cut(s) 944
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 3 cut(s) 920, 1182, 1212
BmrFI CCNGG 2 cut(s) 923, 1215
BmsI GCATC 7 cut(s) 13, 540, 570, 675, 919, 965, 1014
BpiI GAAGAC 1 cut(s) 514
Bpu1102I GCTNAGC 3 cut(s) 22, 773, 1353
BpuEI CTTGAG 2 cut(s) 251, 305
BpuMI CCSGG 1 cut(s) 923
BsaBI GATNNNNATC 1 cut(s) 371
BsaHI GRCGYC 2 cut(s) 519, 919
BsaI GGTCTC 1 cut(s) 642
BsaJI CCNNGG 3 cut(s) 720, 1214, 1358
BsaWI WCCGGW 1 cut(s) 492
BsaXI ACNNNNNCTCC 6 cut(s) 326, 356, 1148, 1178, 1298, 1328
Bsc4I CCNNNNNNNGG 4 cut(s) 134, 544, 658, 1364
Bse118I RCCGGY 1 cut(s) 508
Bse3DI GCAATG 2 cut(s) 612, 1126
Bse8I GATNNNNATC 1 cut(s) 371
BseBI CCWGG 1 cut(s) 1215
BseDI CCNNGG 3 cut(s) 720, 1214, 1358
BseGI GGATG 5 cut(s) 77, 667, 852, 934, 1029
BseJI GATNNNNATC 1 cut(s) 371
BseLI CCNNNNNNNGG 4 cut(s) 134, 544, 658, 1364
BseMI GCAATG 2 cut(s) 612, 1126
BseMII CTCAG 3 cut(s) 36, 764, 1250
BseRI GAGGAG 6 cut(s) 79, 94, 176, 299, 302, 1172
BseSI GKGCMC 1 cut(s) 765
BseX3I CGGCCG 1 cut(s) 506
BseXI GCAGC 2 cut(s) 826, 1322
Bsh1236I CGCG 2 cut(s) 59, 722
Bsh1285I CGRYCG 3 cut(s) 277, 509, 726
BshFI GGCC 3 cut(s) 445, 508, 1288
BshNI GGYRCC 1 cut(s) 918
BsiEI CGRYCG 3 cut(s) 277, 509, 726
BsiHKCI CYCGRG 1 cut(s) 944
BsiSI CCGG 5 cut(s) 493, 505, 509, 659, 923
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 4 cut(s) 134, 544, 658, 1364
BsmAI GTCTC 3 cut(s) 346, 642, 1046
BsmBI CGTCTC 1 cut(s) 346
BsmFI GGGAC 1 cut(s) 310
BsmI GAATGC 2 cut(s) 468, 667
BsnI GGCC 3 cut(s) 445, 508, 1288
Bso31I GGTCTC 1 cut(s) 642
BsoBI CYCGRG 1 cut(s) 944
Bsp1286I GDGCHC 1 cut(s) 765
Bsp143I GATC 3 cut(s) 366, 1015, 1335
Bsp1720I GCTNAGC 3 cut(s) 22, 773, 1353
BspANI GGCC 3 cut(s) 445, 508, 1288
BspCNI CTCAG 3 cut(s) 35, 765, 1251
BspFNI CGCG 2 cut(s) 59, 722
BspLI GGNNCC 3 cut(s) 920, 1182, 1212
BspMI ACCTGC 1 cut(s) 700
BspT107I GGYRCC 1 cut(s) 918
BspTNI GGTCTC 1 cut(s) 642
BsrDI GCAATG 2 cut(s) 612, 1126
BsrFI RCCGGY 1 cut(s) 508
BssAI RCCGGY 1 cut(s) 508
BssECI CCNNGG 3 cut(s) 720, 1214, 1358
BssMI GATC 3 cut(s) 366, 1015, 1335
BssNI GRCGYC 2 cut(s) 519, 919
BssT1I CCWWGG 1 cut(s) 1358
Bst2UI CCWGG 1 cut(s) 1215
Bst4CI ACNGT 5 cut(s) 340, 539, 627, 892, 1207
Bst6I CTCTTC 2 cut(s) 88, 1221
BstACI GRCGYC 2 cut(s) 519, 919
BstC8I GCNNGC 5 cut(s) 217, 443, 510, 585, 971
BstDEI CTNAG 5 cut(s) 22, 773, 1038, 1259, 1353
BstDSI CCRYGG 1 cut(s) 720
BstENI CCTNNNNNAGG 1 cut(s) 1362
BstF5I GGATG 5 cut(s) 77, 667, 852, 934, 1029
BstFNI CGCG 2 cut(s) 59, 722
BstH2I RGCGCY 2 cut(s) 22, 922
BstHHI GCGC 3 cut(s) 21, 61, 921
BstKTI GATC 3 cut(s) 369, 1018, 1338
BstMAI GTCTC 3 cut(s) 346, 642, 1046
BstMBI GATC 3 cut(s) 366, 1015, 1335
BstMCI CGRYCG 3 cut(s) 277, 509, 726
BstMWI GCNNNNNNNGC 5 cut(s) 32, 41, 664, 769, 1011
BstNI CCWGG 1 cut(s) 1215
BstSCI CCNGG 2 cut(s) 921, 1213
BstSLI GKGCMC 1 cut(s) 765
BstUI CGCG 2 cut(s) 59, 722
BstV1I GCAGC 2 cut(s) 826, 1322
BstV2I GAAGAC 1 cut(s) 514
BstZI CGGCCG 1 cut(s) 506
BsuI GTATCC 1 cut(s) 1186
BsuRI GGCC 3 cut(s) 445, 508, 1288
BtgI CCRYGG 1 cut(s) 720
BtgZI GCGATG 1 cut(s) 148
BtsCI GGATG 5 cut(s) 77, 667, 852, 934, 1029
BtsIMutI CAGTG 1 cut(s) 888
BveI ACCTGC 1 cut(s) 700
Cac8I GCNNGC 5 cut(s) 217, 443, 510, 585, 971
CfoI GCGC 3 cut(s) 21, 61, 921
Cfr10I RCCGGY 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 279
Cfr42I CCGCGG 1 cut(s) 723
CseI GACGC 1 cut(s) 539
Csp6I GTAC 1 cut(s) 286
CviAII CATG 3 cut(s) 424, 1019, 1097
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 5 cut(s) 22, 773, 1038, 1259, 1353
DinI GGCGCC 1 cut(s) 920
DpnI GATC 3 cut(s) 368, 1017, 1337
DpnII GATC 3 cut(s) 366, 1015, 1335
DraIII CACNNNGTG 1 cut(s) 547
DrdI GACNNNNNNGTC 1 cut(s) 1060
DseDI GACNNNNNNGTC 1 cut(s) 1060
EaeI YGGCCR 1 cut(s) 506
EagI CGGCCG 1 cut(s) 506
Eam1104I CTCTTC 2 cut(s) 88, 1221
EarI CTCTTC 2 cut(s) 88, 1221
EciI GGCGGA 3 cut(s) 221, 305, 941
EclXI CGGCCG 1 cut(s) 506
Eco130I CCWWGG 1 cut(s) 1358
Eco147I AGGCCT 1 cut(s) 445
Eco31I GGTCTC 1 cut(s) 642
Eco32I GATATC 2 cut(s) 133, 607
Eco47I GGWCC 1 cut(s) 279
Eco52I CGGCCG 1 cut(s) 506
Eco57I CTGAAG 1 cut(s) 458
Eco88I CYCGRG 1 cut(s) 944
EcoNI CCTNNNNNAGG 1 cut(s) 1362
EcoRII CCWGG 1 cut(s) 1213
EcoRV GATATC 2 cut(s) 133, 607
EcoT14I CCWWGG 1 cut(s) 1358
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 920
EheI GGCGCC 1 cut(s) 920
ErhI CCWWGG 1 cut(s) 1358
Esp3I CGTCTC 1 cut(s) 346
FaeI CATG 3 cut(s) 427, 1022, 1100
FaqI GGGAC 1 cut(s) 310
FatI CATG 3 cut(s) 423, 1018, 1096
FauI CCCGC 4 cut(s) 72, 224, 355, 998
FbaI TGATCA 2 cut(s) 366, 1335
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 4 cut(s) 42, 213, 815, 1311
FokI GGATG 5 cut(s) 64, 674, 859, 941, 1036
Fsp4HI GCNGC 4 cut(s) 42, 213, 815, 1311
FspBI CTAG 2 cut(s) 1296, 1359
GlaI GCGC 3 cut(s) 20, 60, 920
GluI GCNGC 4 cut(s) 42, 213, 815, 1311
HaeII RGCGCY 2 cut(s) 22, 922
HaeIII GGCC 3 cut(s) 445, 508, 1288
HapII CCGG 5 cut(s) 493, 505, 509, 659, 923
HgaI GACGC 1 cut(s) 539
HhaI GCGC 3 cut(s) 21, 61, 921
Hin1I GRCGYC 2 cut(s) 519, 919
Hin1II CATG 3 cut(s) 427, 1022, 1100
Hin6I GCGC 3 cut(s) 19, 59, 919
HinP1I GCGC 3 cut(s) 19, 59, 919
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 1140
HinfI GANTC 4 cut(s) 150, 478, 563, 679
HpaII CCGG 5 cut(s) 493, 505, 509, 659, 923
HphI GGTGA 8 cut(s) 110, 482, 527, 559, 724, 865, 1068, 1252
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 6 cut(s) 178, 410, 477, 678, 684, 993
Hpy188III TCNNGA 6 cut(s) 147, 821, 869, 911, 944, 1339
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 3 cut(s) 302, 305, 521
HpyAV CCTTC 8 cut(s) 103, 153, 456, 697, 844, 850, 908, 1267
HpyCH4III ACNGT 5 cut(s) 340, 539, 627, 892, 1207
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 8 cut(s) 4, 441, 587, 667, 688, 864, 880, 1119
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 41, 664, 769, 1011
HpyF3I CTNAG 5 cut(s) 22, 773, 1038, 1259, 1353
HpySE526I ACGT 1 cut(s) 519
Hsp92I GRCGYC 2 cut(s) 519, 919
Hsp92II CATG 3 cut(s) 427, 1022, 1100
HspAI GCGC 3 cut(s) 19, 59, 919
KasI GGCGCC 1 cut(s) 918
KroI GCCGGC 1 cut(s) 508
KroNI GCCGGC 1 cut(s) 510
Ksp22I TGATCA 2 cut(s) 366, 1335
KspI CCGCGG 1 cut(s) 723
Kzo9I GATC 3 cut(s) 366, 1015, 1335
LmnI GCTCC 1 cut(s) 66
Lsp1109I GCAGC 2 cut(s) 826, 1322
LweI GCATC 7 cut(s) 13, 540, 570, 675, 919, 965, 1014
MaeI CTAG 2 cut(s) 1296, 1359
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 2 cut(s) 116, 539
MalI GATC 3 cut(s) 368, 1017, 1337
MboI GATC 3 cut(s) 366, 1015, 1335
MboII GAAGA 8 cut(s) 75, 88, 193, 464, 514, 820, 1238, 1354
MhlI GDGCHC 1 cut(s) 765
MluCI AATT 4 cut(s) 226, 976, 1281, 1299
Mly113I GGCGCC 1 cut(s) 919
MlyI GAGTC 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 201
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 508
MseI TTAA 3 cut(s) 1107, 1166, 1372
MspA1I CMGCKG 1 cut(s) 722
MspI CCGG 5 cut(s) 493, 505, 509, 659, 923
MspR9I CCNGG 2 cut(s) 923, 1215
Mva1269I GAATGC 2 cut(s) 468, 667
MvaI CCWGG 1 cut(s) 1215
MvnI CGCG 2 cut(s) 59, 722
MwoI GCNNNNNNNGC 5 cut(s) 32, 41, 664, 769, 1011
NaeI GCCGGC 1 cut(s) 510
NarI GGCGCC 1 cut(s) 919
NciI CCSGG 1 cut(s) 923
NdeII GATC 3 cut(s) 366, 1015, 1335
NgoMIV GCCGGC 1 cut(s) 508
NlaIII CATG 3 cut(s) 427, 1022, 1100
NlaIV GGNNCC 3 cut(s) 920, 1182, 1212
NmuCI GTSAC 2 cut(s) 116, 539
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 944
PaqCI CACCTGC 1 cut(s) 700
PceI AGGCCT 1 cut(s) 445
PctI GAATGC 2 cut(s) 468, 667
PdiI GCCGGC 1 cut(s) 510
PfeI GAWTC 3 cut(s) 478, 563, 679
PkrI GCNGC 4 cut(s) 43, 214, 816, 1312
PleI GAGTC 1 cut(s) 158
PluTI GGCGCC 1 cut(s) 922
PpsI GAGTC 1 cut(s) 158
PsiI TTATAA 1 cut(s) 885
Psp6I CCWGG 1 cut(s) 1213
PspGI CCWGG 1 cut(s) 1213
PspN4I GGNNCC 3 cut(s) 920, 1182, 1212
PspPI GGNCC 1 cut(s) 279
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SacII CCGCGG 1 cut(s) 723
SalI GTCGAC 1 cut(s) 299
SaqAI TTAA 3 cut(s) 1107, 1166, 1372
SatI GCNGC 4 cut(s) 42, 213, 815, 1311
Sau3AI GATC 3 cut(s) 366, 1015, 1335
Sau96I GGNCC 1 cut(s) 279
ScaI AGTACT 1 cut(s) 287
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 2 cut(s) 923, 1215
SduI GDGCHC 1 cut(s) 765
SfaNI GCATC 7 cut(s) 13, 540, 570, 675, 919, 965, 1014
SfoI GGCGCC 1 cut(s) 920
Sfr274I CTCGAG 1 cut(s) 944
Sfr303I CCGCGG 1 cut(s) 723
SgrBI CCGCGG 1 cut(s) 723
SgrDI CGTCGACG 1 cut(s) 299
SinI GGWCC 1 cut(s) 279
SlaI CTCGAG 1 cut(s) 944
SmlI CTYRAG 3 cut(s) 266, 320, 944
SmoI CTYRAG 3 cut(s) 266, 320, 944
Sse9I AATT 4 cut(s) 226, 976, 1281, 1299
SseBI AGGCCT 1 cut(s) 445
SspDI GGCGCC 1 cut(s) 918
SspMI CTAG 2 cut(s) 1296, 1359
StuI AGGCCT 1 cut(s) 445
StyD4I CCNGG 2 cut(s) 921, 1213
StyI CCWWGG 1 cut(s) 1358
TaaI ACNGT 5 cut(s) 340, 539, 627, 892, 1207
TaiI ACGT 1 cut(s) 522
TaqI TCGA 8 cut(s) 204, 300, 435, 516, 726, 910, 945, 959
TaqII GACCGA 3 cut(s) 263, 267, 1078
TasI AATT 4 cut(s) 226, 976, 1281, 1299
TatI WGTACW 1 cut(s) 285
TauI GCSGC 2 cut(s) 44, 215
TfiI GAWTC 3 cut(s) 478, 563, 679
Tru1I TTAA 3 cut(s) 1107, 1166, 1372
Tru9I TTAA 3 cut(s) 1107, 1166, 1372
TscAI CASTG 1 cut(s) 895
TseFI GTSAC 2 cut(s) 116, 539
TseI GCWGC 2 cut(s) 814, 1310
Tsp45I GTSAC 2 cut(s) 116, 539
TspDTI ATGAA 3 cut(s) 863, 1085, 1286
TspGWI ACGGA 4 cut(s) 439, 575, 1188, 1205
TspRI CASTG 1 cut(s) 895
VpaK11BI GGWCC 1 cut(s) 279
XagI CCTNNNNNAGG 1 cut(s) 1362
XapI RAATTY 2 cut(s) 226, 976
XhoI CTCGAG 1 cut(s) 944
XmaJI CCTAGG 1 cut(s) 1358
XmiI GTMKAC 1 cut(s) 300
XspI CTAG 2 cut(s) 1296, 1359
ZraI GACGTC 1 cut(s) 520
ZrmI AGTACT 1 cut(s) 287
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.