FvH4_7g18090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016065
Physical Location & Seq
Forward (+)
15207793 .. 15208854
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18090.t1

Sequence Viewer

Length: 783 bp
ATGGCAACCGCAATGGAACCACGGAGATATTCGATTAACATTCTTCAAATGTTTAAAATGGCAGGAAGAGCGCAAGGTTGTGTTCAGTCGAAAAGATACTTGCTTCCTTCTGGTCCAATTGGCCTTCCGCTGATAATCTTTGCTCTAGCCAAGGGCCACCGTATCAACACCACATTCCCTCTCTCAAGTACTGGTCCGGCCATCCTCCAACTGGTTCAGATTTCAGCTCTAGCGTTCGCCAATGGAGGTGACAACGACATCAAGTATGTGTTCTTCGAGGCATCAACCATCTCTGGAATTTTACATGCAAGCATGTACCTGGATGCTGTTGTCTTACCTTACTACACTGGTCTTGATGCTCTGGTGAAATCAACTTTTTCGGGTGAGTGTCCATCTTGTGTGTGTCGAAATGAAGATTTGGTAGTGGGAGGAACACTGGTGTCCTACAGAGGATGGGGTTTAACCACTTTCTTGGTTGTGGCTACCCTGTGCTGGAGAGTTATAAGCAGGCTCTATGGAAGGAAATTAGGAAAGTTCATACTCATTAGGTCTCTGCTGGAGAGTTCAAGTTGGATCTTGATAATCATAGATTGTGTTTCTCTCTCTACAAATTCGCCACCAGAGAGGTTGATGTTGCAAGTTGCTGCTTTCGGAGGCATACTTGTTTTGATTTGCCTTTGTGTAATCAGAGAATTATGCACTCGTTTAACACATCTACATTCTGTGTATAGAAGTAGGACAGAGGATGTTTGCAACAGAAGCAAGATAGAAATGACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

28.66

Weight (kDa)

9.24

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41610
fragaria_vesca FvH4_7g18090 FvH4_7g18120
prunus_persica Prupe.2G203300_v2.0.a1
pyrus_communis pycom01g11750
rosa_chinensis RchiOBHm_Chr1g0361741
rosa_laevigata RLG00000027706
rosa_multiflora Rmu_sc0005733.1_g000002
rosa_roxburghii Rroxscaffold_4G00294730
rosa_rugosa Rorug01G0291300
rosa_samantha Rh1AG301700 Rh1BG264400 Rh1CG283000 Rh1DG294400
rosa_wichuraiana Rw1G026730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 503
AciI CCGC 2 cut(s) 9, 128
AclWI GGATC 1 cut(s) 581
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 2 cut(s) 297, 610
AfaI GTAC 2 cut(s) 190, 317
AfiI CCNNNNNNNGG 2 cut(s) 211, 492
AgsI TTSAA 2 cut(s) 47, 567
AjnI CCWGG 1 cut(s) 318
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw26I GTCTC 1 cut(s) 555
AlwI GGATC 1 cut(s) 581
AoxI GGCC 3 cut(s) 121, 154, 198
ApeKI GCWGC 1 cut(s) 644
ApoI RAATTY 2 cut(s) 297, 610
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 3 cut(s) 113, 154, 194
AsuHPI GGTGA 3 cut(s) 260, 376, 395
AvaII GGWCC 2 cut(s) 113, 194
BarI GAAGNNNNNNTAC 2 cut(s) 257, 289
BbvI GCAGC 1 cut(s) 631
BccI CCATC 4 cut(s) 209, 296, 400, 447
BciT130I CCWGG 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 555
BfaI CTAG 2 cut(s) 146, 230
BfmI CTRYAG 1 cut(s) 445
BisI GCNGC 1 cut(s) 645
BlsI GCNGC 1 cut(s) 646
BmcAI AGTACT 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 320
Bme18I GGWCC 2 cut(s) 113, 194
BmgT120I GGNCC 3 cut(s) 113, 154, 194
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 320
BmsI GCATC 3 cut(s) 290, 313, 346
BpmI CTGGAG 2 cut(s) 514, 578
BpuEI CTTGAG 1 cut(s) 169
BsaI GGTCTC 1 cut(s) 555
BsaJI CCNNGG 2 cut(s) 20, 150
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 492
Bse1I ACTGG 4 cut(s) 196, 216, 352, 441
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 2 cut(s) 20, 150
BseGI GGATG 4 cut(s) 201, 328, 458, 751
BseLI CCNNNNNNNGG 2 cut(s) 211, 492
BseMI GCAATG 1 cut(s) 18
BseNI ACTGG 4 cut(s) 196, 216, 352, 441
BseXI GCAGC 1 cut(s) 631
BshFI GGCC 3 cut(s) 123, 156, 200
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 2 cut(s) 211, 492
BsmAI GTCTC 1 cut(s) 555
BsnI GGCC 3 cut(s) 123, 156, 200
Bso31I GGTCTC 1 cut(s) 555
Bsp143I GATC 1 cut(s) 573
BspACI CCGC 2 cut(s) 9, 128
BspANI GGCC 3 cut(s) 123, 156, 200
BspLI GGNNCC 1 cut(s) 18
BspPI GGATC 1 cut(s) 581
BspQI GCTCTTC 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 555
BsrDI GCAATG 1 cut(s) 18
BsrI ACTGG 4 cut(s) 196, 216, 352, 441
BssECI CCNNGG 2 cut(s) 20, 150
BssMI GATC 1 cut(s) 573
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 310, 509
BstDSI CCRYGG 1 cut(s) 20
BstF5I GGATG 4 cut(s) 201, 328, 458, 751
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 1 cut(s) 576
BstMAI GTCTC 1 cut(s) 555
BstMBI GATC 1 cut(s) 573
BstMWI GCNNNNNNNGC 2 cut(s) 68, 759
BstNI CCWGG 1 cut(s) 320
BstNSI RCATGY 2 cut(s) 308, 316
BstSCI CCNGG 1 cut(s) 318
BstSFI CTRYAG 1 cut(s) 445
BstV1I GCAGC 1 cut(s) 631
BstX2I RGATCY 1 cut(s) 573
BstXI CCANNNNNNTGG 1 cut(s) 472
BstYI RGATCY 1 cut(s) 573
BsuRI GGCC 3 cut(s) 123, 156, 200
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 4 cut(s) 201, 328, 458, 751
BtsIMutI CAGTG 2 cut(s) 345, 434
Cac8I GCNNGC 2 cut(s) 310, 509
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 3 cut(s) 113, 154, 194
Csp6I GTAC 2 cut(s) 189, 316
CviAII CATG 2 cut(s) 305, 313
CviJI RGCY 7 cut(s) 123, 149, 156, 200, 227, 482, 511
CviKI_1 RGCY 7 cut(s) 123, 149, 156, 200, 227, 482, 511
CviQI GTAC 2 cut(s) 189, 316
DpnI GATC 1 cut(s) 575
DpnII GATC 1 cut(s) 573
DraI TTTAAA 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 555
Eco47I GGWCC 2 cut(s) 113, 194
EcoRII CCWGG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 2 cut(s) 308, 316
FatI CATG 2 cut(s) 304, 312
Fnu4HI GCNGC 1 cut(s) 645
FokI GGATG 4 cut(s) 188, 335, 465, 758
Fsp4HI GCNGC 1 cut(s) 645
FspBI CTAG 2 cut(s) 146, 230
GlaI GCGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 645
GsuI CTGGAG 2 cut(s) 514, 578
HaeIII GGCC 3 cut(s) 123, 156, 200
HapII CCGG 1 cut(s) 197
HhaI GCGC 1 cut(s) 73
Hin1II CATG 2 cut(s) 308, 316
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HpaII CCGG 1 cut(s) 197
HphI GGTGA 3 cut(s) 260, 376, 395
Hpy188I TCNGA 3 cut(s) 219, 653, 689
Hpy188III TCNNGA 3 cut(s) 294, 353, 577
HpyAV CCTTC 3 cut(s) 117, 134, 513
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 4 cut(s) 308, 637, 699, 753
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 759
Hsp92II CATG 2 cut(s) 308, 316
HspAI GCGC 1 cut(s) 71
Kzo9I GATC 1 cut(s) 573
LguI GCTCTTC 1 cut(s) 61
Lsp1109I GCAGC 1 cut(s) 631
LweI GCATC 3 cut(s) 290, 313, 346
MaeI CTAG 2 cut(s) 146, 230
MaeIII GTNAC 1 cut(s) 248
MalI GATC 1 cut(s) 575
MboI GATC 1 cut(s) 573
MboII GAAGA 4 cut(s) 35, 78, 265, 425
MfeI CAATTG 1 cut(s) 117
MflI RGATCY 1 cut(s) 573
MluCI AATT 5 cut(s) 117, 297, 524, 610, 692
MmeI TCCRAC 2 cut(s) 232, 551
MnlI CCTC 9 cut(s) 189, 215, 239, 271, 422, 443, 618, 647, 736
MseI TTAA 4 cut(s) 36, 54, 461, 707
MspA1I CMGCKG 1 cut(s) 130
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 320
MunI CAATTG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 320
MwoI GCNNNNNNNGC 2 cut(s) 68, 759
NdeII GATC 1 cut(s) 573
NlaIII CATG 2 cut(s) 308, 316
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 248
NspI RCATGY 2 cut(s) 308, 316
PciSI GCTCTTC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 646
PsiI TTATAA 1 cut(s) 503
Psp6I CCWGG 1 cut(s) 318
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 3 cut(s) 113, 154, 194
PsuI RGATCY 1 cut(s) 573
RsaI GTAC 2 cut(s) 190, 317
RsaNI GTAC 2 cut(s) 189, 316
SapI GCTCTTC 1 cut(s) 61
SaqAI TTAA 4 cut(s) 36, 54, 461, 707
SatI GCNGC 1 cut(s) 645
Sau3AI GATC 1 cut(s) 573
Sau96I GGNCC 3 cut(s) 113, 154, 194
ScaI AGTACT 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 320
SetI ASST 7 cut(s) 79, 229, 250, 321, 340, 551, 629
SfaNI GCATC 3 cut(s) 290, 313, 346
SfcI CTRYAG 1 cut(s) 445
SinI GGWCC 2 cut(s) 113, 194
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 5 cut(s) 117, 297, 524, 610, 692
SsiI CCGC 2 cut(s) 9, 128
SspMI CTAG 2 cut(s) 146, 230
StyD4I CCNGG 1 cut(s) 318
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 4 cut(s) 32, 89, 276, 406
TasI AATT 5 cut(s) 117, 297, 524, 610, 692
TatI WGTACW 1 cut(s) 188
Tru1I TTAA 4 cut(s) 36, 54, 461, 707
Tru9I TTAA 4 cut(s) 36, 54, 461, 707
TscAI CASTG 2 cut(s) 352, 441
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 1 cut(s) 644
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 2 cut(s) 426, 526
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 2 cut(s) 352, 441
VpaK11BI GGWCC 2 cut(s) 113, 194
XapI RAATTY 2 cut(s) 297, 610
XceI RCATGY 2 cut(s) 308, 316
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XspI CTAG 2 cut(s) 146, 230
ZrmI AGTACT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.