pycom01g11750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0016065
Physical Location & Seq
Forward (+)
12804325 .. 12804859
535 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11750.1

Sequence Viewer

Length: 378 bp
ATGACTACAACTCATTTACATGTATGTAGATACCTCCATCAAGACACCGGCCCGGCATTTCTCCTCCTCGTTCTGATATCTGCGCTGACCTTCGACAATGGAGTCGAGTCAGACTTCAACGTGTACTTGGATTCACTCATCTTACCATACTATACCGGTATTGATGCTCTAGTGATACCATGCCGGGTTGCAGGAGCGAGAACTGGAAAGTCCATATGGATTGAGTCGTTGCTCGAGTGTTCGAATTGGAACTTGATAATCGCAGATTGTGTCGATCTAACCACAAACTCCCCGCCGGAGAGATTGGAGTTGCGAGTTGCTGGTTTCGGAGGCATCTTCGTTCTGGTTTGCTTTCGTGTAAACAGAGAAGCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.9

Weight (kDa)

5.19

Isoelectric Point (pI)

25.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41610
fragaria_vesca FvH4_7g18090 FvH4_7g18120
prunus_persica Prupe.2G203300_v2.0.a1
pyrus_communis pycom01g11750
rosa_chinensis RchiOBHm_Chr1g0361741
rosa_laevigata RLG00000027706
rosa_multiflora Rmu_sc0005733.1_g000002
rosa_roxburghii Rroxscaffold_4G00294730
rosa_rugosa Rorug01G0291300
rosa_samantha Rh1AG301700 Rh1BG264400 Rh1CG283000 Rh1DG294400
rosa_wichuraiana Rw1G026730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AciI CCGC 1 cut(s) 293
AfaI GTAC 1 cut(s) 125
AflIII ACRYGT 2 cut(s) 19, 120
AgeI ACCGGT 1 cut(s) 155
AgsI TTSAA 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 1 cut(s) 49
AsiGI ACCGGT 1 cut(s) 155
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 50
AsuC2I CCSGG 2 cut(s) 53, 185
AsuII TTCGAA 1 cut(s) 242
AvaI CYCGRG 1 cut(s) 233
BccI CCATC 1 cut(s) 45
BcnI CCSGG 2 cut(s) 53, 185
BfaI CTAG 1 cut(s) 170
Bme1390I CCNGG 2 cut(s) 53, 185
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 50
BmrFI CCNGG 2 cut(s) 53, 185
BmsI GCATC 2 cut(s) 154, 342
Bpu14I TTCGAA 1 cut(s) 242
BpuMI CCSGG 2 cut(s) 53, 185
BsaWI WCCGGW 1 cut(s) 155
Bse118I RCCGGY 2 cut(s) 47, 155
Bse1I ACTGG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 2 cut(s) 53, 56
BshFI GGCC 1 cut(s) 51
BshTI ACCGGT 1 cut(s) 155
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 5 cut(s) 48, 53, 156, 184, 296
BsnI GGCC 1 cut(s) 51
BsoBI CYCGRG 1 cut(s) 233
Bsp119I TTCGAA 1 cut(s) 242
Bsp143I GATC 1 cut(s) 274
BspACI CCGC 1 cut(s) 293
BspANI GGCC 1 cut(s) 51
BspT104I TTCGAA 1 cut(s) 242
BsrFI RCCGGY 2 cut(s) 47, 155
BsrI ACTGG 1 cut(s) 208
BssAI RCCGGY 2 cut(s) 47, 155
BssMI GATC 1 cut(s) 274
BstBI TTCGAA 1 cut(s) 242
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 2 cut(s) 51, 183
BsuRI GGCC 1 cut(s) 51
CfoI GCGC 1 cut(s) 85
Cfr10I RCCGGY 2 cut(s) 47, 155
Cfr13I GGNCC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 124
CspAI ACCGGT 1 cut(s) 155
CviAII CATG 2 cut(s) 20, 180
CviJI RGCY 1 cut(s) 51
CviKI_1 RGCY 1 cut(s) 51
CviQI GTAC 1 cut(s) 124
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
Eco32I GATATC 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 233
EcoRV GATATC 1 cut(s) 78
FaeI CATG 2 cut(s) 23, 183
FaiI YATR 7 cut(s) 21, 25, 148, 153, 181, 215, 217
FatI CATG 2 cut(s) 19, 179
FauI CCCGC 1 cut(s) 300
FauNDI CATATG 1 cut(s) 215
FspBI CTAG 1 cut(s) 170
GlaI GCGC 1 cut(s) 84
HaeIII GGCC 1 cut(s) 51
HapII CCGG 5 cut(s) 48, 53, 156, 184, 296
HhaI GCGC 1 cut(s) 85
Hin1II CATG 2 cut(s) 23, 183
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HinfI GANTC 4 cut(s) 102, 107, 131, 224
HpaII CCGG 5 cut(s) 48, 53, 156, 184, 296
Hpy166II GTNNAC 2 cut(s) 124, 361
Hpy188I TCNGA 3 cut(s) 75, 112, 329
Hpy188III TCNNGA 1 cut(s) 41
Hpy8I GTNNAC 2 cut(s) 124, 361
HpyAV CCTTC 1 cut(s) 100
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 1 cut(s) 191
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 2 cut(s) 23, 183
HspAI GCGC 1 cut(s) 83
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 9 cut(s) 61, 66, 169, 177, 189, 197, 306, 309, 329
LweI GCATC 2 cut(s) 154, 342
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 120
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 1 cut(s) 328
MluCI AATT 1 cut(s) 244
MlyI GAGTC 3 cut(s) 111, 116, 233
MnlI CCTC 4 cut(s) 44, 74, 77, 323
MslI CAYNNNNRTG 1 cut(s) 18
MspI CCGG 5 cut(s) 48, 53, 156, 184, 296
MspR9I CCNGG 2 cut(s) 53, 185
NciI CCSGG 2 cut(s) 53, 185
NdeI CATATG 1 cut(s) 215
NdeII GATC 1 cut(s) 274
NlaIII CATG 2 cut(s) 23, 183
NspI RCATGY 1 cut(s) 23
NspV TTCGAA 1 cut(s) 242
PaeR7I CTCGAG 1 cut(s) 233
PciI ACATGT 1 cut(s) 19
PfeI GAWTC 1 cut(s) 131
PinAI ACCGGT 1 cut(s) 155
PleI GAGTC 3 cut(s) 110, 115, 232
PpsI GAGTC 3 cut(s) 110, 115, 232
PscI ACATGT 1 cut(s) 19
PspPI GGNCC 1 cut(s) 50
PspXI VCTCGAGB 1 cut(s) 233
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 18
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 3 cut(s) 111, 116, 233
ScrFI CCNGG 2 cut(s) 53, 185
SetI ASST 3 cut(s) 36, 92, 123
SfaNI GCATC 2 cut(s) 154, 342
Sfr274I CTCGAG 1 cut(s) 233
SfuI TTCGAA 1 cut(s) 242
SlaI CTCGAG 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 1 cut(s) 244
SsiI CCGC 1 cut(s) 293
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 2 cut(s) 51, 183
TaiI ACGT 1 cut(s) 123
TaqI TCGA 5 cut(s) 93, 105, 234, 242, 273
TasI AATT 1 cut(s) 244
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 1 cut(s) 131
XceI RCATGY 1 cut(s) 23
XhoI CTCGAG 1 cut(s) 233
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.