Prupe.2G203300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016065
Physical Location & Seq
Forward (+)
23916006 .. 23916990
985 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G203300.1

Sequence Viewer

Length: 975 bp
ATGAATTGGAACGTCTTACGACCCGAATATGCAGCATGGCAACCCGAATGGACCGTGGAAGATATCCGGTTAACATTTCTCAAATGTACAAGATGGCAGGTGGAGGAAACCTTGGATCCGATCAATTGCCCTTACCACTACTTCTGTGACAGTGTTTACCCAGGAAACTACTCGCCTGCTGTGGATTTTCTGCTTCTTTTCTTTGCAGCAGCGTCATACTTGGCAACCCTGGTCTTTATGGTGATGCACATATCAGGTAGAGGTCAAAGTTTTAGTCAGTCAAAAAGGTACTTGCTACCTTCCGGTCCAATTGCTCTTCCACTTATCATCTTGGCCTTAGCCAAGGGCCACCGGATAAACTCTGCCTTTCCTCTCTCATGCACCGGTCCAGCAATCCTCCTGCTGGTTCTGATTTCTGCTCTAACCTTCGACAATGGAGCAGAAACAGACATCAAGTACGTGCTTTTTGAGACATCAACCATCTCTGGAATTTTGCATGCAAGCATATACTTGGATTCTGTCATCTTACCCTACTATACTGGTTTTGACGCTCTAGTCTCATCAACTTTTTCAGGTGAGTGTGCATCTTGTGTGTGTCGTAAAGAGGTTTTGATTGTGGGAGGAACATTAATATCCTACAGGGGATGGTCATTGACCACTTTTTTGGTTGTGGGCACCCTGTGTTGGAGGATTATATGCCGGCTTGGGGGAACAAAAAGAGGAAAGTTCATACTGATTAGGTCTTTGCTCGGGAGTTCAAGCTGGATTTTGATAATCATAGATTGTGCTTATCTAACCACAAACACCCCACCAGAGAGATTGGTGTTGCGAGTTGCTGCTTTTGGAGGTATATTTGTTTTGATTTGCCTTTATGTAATCAGAGAAGCATTCACTCACATCACACAATTACATTCTGTGTATAAAAGTAGGACAGCAGTTGTTTGCAACACAAGCAAGGTAGAAATGAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

36.16

Weight (kDa)

8.68

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41610
fragaria_vesca FvH4_7g18090 FvH4_7g18120
prunus_persica Prupe.2G203300_v2.0.a1
pyrus_communis pycom01g11750
rosa_chinensis RchiOBHm_Chr1g0361741
rosa_laevigata RLG00000027706
rosa_multiflora Rmu_sc0005733.1_g000002
rosa_roxburghii Rroxscaffold_4G00294730
rosa_rugosa Rorug01G0291300
rosa_samantha Rh1AG301700 Rh1BG264400 Rh1CG283000 Rh1DG294400
rosa_wichuraiana Rw1G026730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 88
AasI GACNNNNNNGTC 1 cut(s) 554
Acc36I ACCTGC 1 cut(s) 88
AccB1I GGYRCC 1 cut(s) 674
AclWI GGATC 2 cut(s) 110, 123
AcsI RAATTY 1 cut(s) 489
AdeI CACNNNGTG 1 cut(s) 681
AfaI GTAC 3 cut(s) 88, 290, 458
AfiI CCNNNNNNNGG 3 cut(s) 403, 684, 706
AgeI ACCGGT 1 cut(s) 383
AgsI TTSAA 1 cut(s) 759
AjnI CCWGG 2 cut(s) 160, 228
AluBI AGCT 1 cut(s) 762
AluI AGCT 1 cut(s) 762
Alw26I GTCTC 2 cut(s) 464, 562
AlwI GGATC 2 cut(s) 110, 123
Ama87I CYCGRG 1 cut(s) 749
AoxI GGCC 2 cut(s) 333, 346
ApeKI GCWGC 4 cut(s) 32, 206, 209, 836
ApoI RAATTY 1 cut(s) 489
ArsI GACNNNNNNTTYG 4 cut(s) 259, 291, 646, 678
AseI ATTAAT 1 cut(s) 629
AsiGI ACCGGT 1 cut(s) 383
AspS9I GGNCC 4 cut(s) 51, 305, 346, 386
AsuHPI GGTGA 2 cut(s) 253, 587
AvaI CYCGRG 1 cut(s) 749
AvaII GGWCC 3 cut(s) 51, 305, 386
BaeGI GKGCMC 1 cut(s) 677
BamHI GGATCC 1 cut(s) 115
BanI GGYRCC 1 cut(s) 674
BbvI GCAGC 4 cut(s) 44, 218, 221, 823
BccI CCATC 3 cut(s) 87, 488, 639
BciT130I CCWGG 2 cut(s) 162, 230
BcoDI GTCTC 2 cut(s) 464, 562
BfaI CTAG 1 cut(s) 554
BfmI CTRYAG 1 cut(s) 637
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 4 cut(s) 33, 207, 210, 837
BlsI GCNGC 4 cut(s) 34, 208, 211, 838
Bme1390I CCNGG 2 cut(s) 162, 230
Bme18I GGWCC 3 cut(s) 51, 305, 386
BmeT110I CYCGRG 1 cut(s) 749
BmgT120I GGNCC 4 cut(s) 51, 305, 346, 386
BmiI GGNNCC 2 cut(s) 117, 676
BmrFI CCNGG 2 cut(s) 162, 230
BmsI GCATC 2 cut(s) 234, 593
Bpu10I CCTNAGC 1 cut(s) 337
BsaAI YACGTR 1 cut(s) 460
BsaJI CCNNGG 5 cut(s) 54, 111, 160, 228, 342
BsaWI WCCGGW 4 cut(s) 66, 302, 351, 383
Bsc4I CCNNNNNNNGG 3 cut(s) 403, 684, 706
Bse118I RCCGGY 2 cut(s) 383, 699
Bse1I ACTGG 1 cut(s) 544
BseBI CCWGG 2 cut(s) 162, 230
BseDI CCNNGG 5 cut(s) 54, 111, 160, 228, 342
BseGI GGATG 1 cut(s) 650
BseLI CCNNNNNNNGG 3 cut(s) 403, 684, 706
BseNI ACTGG 1 cut(s) 544
BseSI GKGCMC 1 cut(s) 677
BseXI GCAGC 4 cut(s) 44, 218, 221, 823
BshFI GGCC 2 cut(s) 335, 348
BshNI GGYRCC 1 cut(s) 674
BshTI ACCGGT 1 cut(s) 383
BsiHKCI CYCGRG 1 cut(s) 749
BsiSI CCGG 5 cut(s) 67, 303, 352, 384, 700
BslI CCNNNNNNNGG 3 cut(s) 403, 684, 706
BsmAI GTCTC 2 cut(s) 464, 562
BsmI GAATGC 1 cut(s) 887
BsnI GGCC 2 cut(s) 335, 348
BsoBI CYCGRG 1 cut(s) 749
Bsp1286I GDGCHC 1 cut(s) 677
Bsp1407I TGTACA 1 cut(s) 86
Bsp143I GATC 2 cut(s) 115, 120
BspANI GGCC 2 cut(s) 335, 348
BspLI GGNNCC 2 cut(s) 117, 676
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 2 cut(s) 110, 123
BspQI GCTCTTC 1 cut(s) 321
BspT107I GGYRCC 1 cut(s) 674
BsrFI RCCGGY 2 cut(s) 383, 699
BsrGI TGTACA 1 cut(s) 86
BsrI ACTGG 1 cut(s) 544
BssAI RCCGGY 2 cut(s) 383, 699
BssECI CCNNGG 5 cut(s) 54, 111, 160, 228, 342
BssMI GATC 2 cut(s) 115, 120
BssT1I CCWWGG 2 cut(s) 111, 342
Bst2UI CCWGG 2 cut(s) 162, 230
Bst4CI ACNGT 2 cut(s) 55, 152
Bst6I CTCTTC 1 cut(s) 321
BstAUI TGTACA 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 460
BstC8I GCNNGC 4 cut(s) 177, 498, 502, 701
BstDEI CTNAG 1 cut(s) 337
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 650
BstKTI GATC 2 cut(s) 118, 123
BstMAI GTCTC 2 cut(s) 464, 562
BstMBI GATC 2 cut(s) 115, 120
BstMWI GCNNNNNNNGC 1 cut(s) 951
BstNI CCWGG 2 cut(s) 162, 230
BstNSI RCATGY 1 cut(s) 500
BstSCI CCNGG 2 cut(s) 160, 228
BstSFI CTRYAG 1 cut(s) 637
BstSLI GKGCMC 1 cut(s) 677
BstV1I GCAGC 4 cut(s) 44, 218, 221, 823
BstX2I RGATCY 1 cut(s) 115
BstXI CCANNNNNNTGG 1 cut(s) 664
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 2 cut(s) 335, 348
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 650
BtsIMutI CAGTG 1 cut(s) 157
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 4 cut(s) 177, 498, 502, 701
Cfr10I RCCGGY 2 cut(s) 383, 699
Cfr13I GGNCC 4 cut(s) 51, 305, 346, 386
CseI GACGC 2 cut(s) 201, 557
Csp6I GTAC 3 cut(s) 87, 289, 457
CspAI ACCGGT 1 cut(s) 383
CviAII CATG 3 cut(s) 36, 378, 497
CviJI RGCY 5 cut(s) 335, 341, 348, 703, 762
CviKI_1 RGCY 5 cut(s) 335, 341, 348, 703, 762
CviQI GTAC 3 cut(s) 87, 289, 457
DdeI CTNAG 1 cut(s) 337
DpnI GATC 2 cut(s) 117, 122
DpnII GATC 2 cut(s) 115, 120
DraIII CACNNNGTG 1 cut(s) 681
DrdI GACNNNNNNGTC 1 cut(s) 554
DseDI GACNNNNNNGTC 1 cut(s) 554
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco130I CCWWGG 2 cut(s) 111, 342
Eco32I GATATC 1 cut(s) 64
Eco47I GGWCC 3 cut(s) 51, 305, 386
Eco88I CYCGRG 1 cut(s) 749
EcoRII CCWGG 2 cut(s) 160, 228
EcoRV GATATC 1 cut(s) 64
EcoT14I CCWWGG 2 cut(s) 111, 342
ErhI CCWWGG 2 cut(s) 111, 342
FaeI CATG 3 cut(s) 39, 381, 500
FatI CATG 3 cut(s) 35, 377, 496
Fnu4HI GCNGC 4 cut(s) 33, 207, 210, 837
FokI GGATG 1 cut(s) 657
Fsp4HI GCNGC 4 cut(s) 33, 207, 210, 837
FspBI CTAG 1 cut(s) 554
GluI GCNGC 4 cut(s) 33, 207, 210, 837
HaeIII GGCC 2 cut(s) 335, 348
HapII CCGG 5 cut(s) 67, 303, 352, 384, 700
HgaI GACGC 2 cut(s) 201, 557
Hin1II CATG 3 cut(s) 39, 381, 500
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HinfI GANTC 1 cut(s) 515
HpaI GTTAAC 1 cut(s) 72
HpaII CCGG 5 cut(s) 67, 303, 352, 384, 700
HphI GGTGA 2 cut(s) 253, 587
Hpy166II GTNNAC 2 cut(s) 72, 157
Hpy188I TCNGA 3 cut(s) 120, 411, 881
Hpy188III TCNNGA 2 cut(s) 486, 751
Hpy8I GTNNAC 2 cut(s) 72, 157
HpyAV CCTTC 2 cut(s) 309, 436
HpyCH4III ACNGT 2 cut(s) 55, 152
HpyCH4IV ACGT 2 cut(s) 12, 459
HpyCH4V TGCA 8 cut(s) 32, 206, 247, 381, 496, 500, 584, 945
HpyF10VI GCNNNNNNNGC 1 cut(s) 951
HpyF3I CTNAG 1 cut(s) 337
HpySE526I ACGT 2 cut(s) 12, 459
Hsp92II CATG 3 cut(s) 39, 381, 500
KroI GCCGGC 1 cut(s) 699
KroNI GCCGGC 1 cut(s) 701
KspAI GTTAAC 1 cut(s) 72
Kzo9I GATC 2 cut(s) 115, 120
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 1 cut(s) 437
Lsp1109I GCAGC 4 cut(s) 44, 218, 221, 823
LweI GCATC 2 cut(s) 234, 593
MaeI CTAG 1 cut(s) 554
MaeII ACGT 2 cut(s) 12, 459
MaeIII GTNAC 1 cut(s) 146
MalI GATC 2 cut(s) 117, 122
MboI GATC 2 cut(s) 115, 120
MboII GAAGA 2 cut(s) 71, 308
MfeI CAATTG 2 cut(s) 124, 309
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 677
MluCI AATT 5 cut(s) 4, 124, 309, 489, 905
MmeI TCCRAC 1 cut(s) 665
MnlI CCTC 9 cut(s) 97, 254, 381, 407, 598, 614, 681, 713, 839
MroNI GCCGGC 1 cut(s) 699
MseI TTAA 2 cut(s) 71, 629
MspI CCGG 5 cut(s) 67, 303, 352, 384, 700
MspR9I CCNGG 2 cut(s) 162, 230
MunI CAATTG 2 cut(s) 124, 309
Mva1269I GAATGC 1 cut(s) 887
MvaI CCWGG 2 cut(s) 162, 230
MwoI GCNNNNNNNGC 1 cut(s) 951
NaeI GCCGGC 1 cut(s) 701
NdeII GATC 2 cut(s) 115, 120
NgoMIV GCCGGC 1 cut(s) 699
NlaIII CATG 3 cut(s) 39, 381, 500
NlaIV GGNNCC 2 cut(s) 117, 676
NmuCI GTSAC 1 cut(s) 146
NspI RCATGY 1 cut(s) 500
PaeI GCATGC 1 cut(s) 500
PaqCI CACCTGC 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 321
PctI GAATGC 1 cut(s) 887
PdiI GCCGGC 1 cut(s) 701
PfeI GAWTC 1 cut(s) 515
PinAI ACCGGT 1 cut(s) 383
PkrI GCNGC 4 cut(s) 34, 208, 211, 838
Ppu21I YACGTR 1 cut(s) 460
PshBI ATTAAT 1 cut(s) 629
Psp6I CCWGG 2 cut(s) 160, 228
PspGI CCWGG 2 cut(s) 160, 228
PspN4I GGNNCC 2 cut(s) 117, 676
PspPI GGNCC 4 cut(s) 51, 305, 346, 386
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 3 cut(s) 88, 290, 458
RsaNI GTAC 3 cut(s) 87, 289, 457
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 2 cut(s) 71, 629
SatI GCNGC 4 cut(s) 33, 207, 210, 837
Sau3AI GATC 2 cut(s) 115, 120
Sau96I GGNCC 4 cut(s) 51, 305, 346, 386
ScrFI CCNGG 2 cut(s) 162, 230
SduI GDGCHC 1 cut(s) 677
SfaNI GCATC 2 cut(s) 234, 593
SfcI CTRYAG 1 cut(s) 637
SinI GGWCC 3 cut(s) 51, 305, 386
SphI GCATGC 1 cut(s) 500
Sse9I AATT 5 cut(s) 4, 124, 309, 489, 905
SspMI CTAG 1 cut(s) 554
StyD4I CCNGG 2 cut(s) 160, 228
StyI CCWWGG 2 cut(s) 111, 342
TaaI ACNGT 2 cut(s) 55, 152
TaiI ACGT 2 cut(s) 15, 462
TaqI TCGA 1 cut(s) 429
TasI AATT 5 cut(s) 4, 124, 309, 489, 905
TatI WGTACW 1 cut(s) 86
TfiI GAWTC 1 cut(s) 515
Tru1I TTAA 2 cut(s) 71, 629
Tru9I TTAA 2 cut(s) 71, 629
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 4 cut(s) 32, 206, 209, 836
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 2 cut(s) 17, 718
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 3 cut(s) 51, 305, 386
VspI ATTAAT 1 cut(s) 629
XapI RAATTY 1 cut(s) 489
XceI RCATGY 1 cut(s) 500
XspI CTAG 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.