Rroxscaffold_4G00294730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016065
Physical Location & Seq
Reverse (-)
14714621 .. 14715595
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294730.1

Sequence Viewer

Length: 975 bp
ATGAATGGGAATCTCTTGCTTCCTGAATTTCCAGCATGGCAACCCGAATGTAGCCGTGGAGATATTCGACTAACATTCTTCAAATGTTTAAAATGGCAGGTAGAAGAGACCTTGAATCCAATCGAGTGCCCTTACCACTACTACTGTGATAGTGTTTATCCCGGGAACTATTCACCTGTTGTGGATAATCTGGTTCTTTTCTTCGTAGTGTCTACATACTTGGCAACCTTGGTCATAATGGTAATGCACATTGTAGGAAGAGCGCAAAGTTGTGTTCAGTCGAAAAGATACTTGCTTCCCTCTGGTCCAATTGCCCTTCCGCTGATCATCTTGGCCCTAGCCAAGGGCCACCGAATCAACACCACGTTCCCTCTCTCAAGTACTGGTCCGGCCATCCTCCAATTGGTTCAGATTTCGGCTCTAACCTTCACCAATGGAGGTGACAACGACATCAAGTATGTGTTTTTTGAGGCATCAACCATCTCAGGAATTTTACATGCAAGCATGTACCTGGATGCTGTCATCTTACCTTACTATACTGGTTTTGATGCTCTGGTGAAATCAACTTTTTCGGGTGAGTGTCCATCTTGTGTATGTCGAAATGAAGATTTGGTAGTGGGAGGGACACTGGTATCCTACACAGGATGGTCCTTGACCACTTTTTTGGTTGTGGGTACCCTGTGCTGGAGAGTTGTATGCAGGCTCTATGGAAGGAAACTAGGAAAGTTCATACTGATTAGGTCTTTGCTGGAGGGTTCAAGTTGGATCTTGATGATAATAGATTGTGTTTATCTCACCACAAACACGCCACCAGAGAGATTGATGTTGCGAGTTGCTGCATTTGGAGGCATACTTGTTTTGATTTGCCTTTGTGTAATTAGAGAATTATGCACTTGTATCACTCAACTACATTCTGTGTATAAAAGTAGGGCAGCAGATGTCTGCAACAGAAGCAAGATAGAAATGACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

36.08

Weight (kDa)

8.28

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41610
fragaria_vesca FvH4_7g18090 FvH4_7g18120
prunus_persica Prupe.2G203300_v2.0.a1
pyrus_communis pycom01g11750
rosa_chinensis RchiOBHm_Chr1g0361741
rosa_laevigata RLG00000027706
rosa_multiflora Rmu_sc0005733.1_g000002
rosa_roxburghii Rroxscaffold_4G00294730
rosa_rugosa Rorug01G0291300
rosa_samantha Rh1AG301700 Rh1BG264400 Rh1CG283000 Rh1DG294400
rosa_wichuraiana Rw1G026730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 88
Acc65I GGTACC 1 cut(s) 674
AccB1I GGYRCC 1 cut(s) 674
AccI GTMKAC 1 cut(s) 212
AciI CCGC 1 cut(s) 320
AclWI GGATC 1 cut(s) 773
AcoI YGGCCR 1 cut(s) 390
AcsI RAATTY 2 cut(s) 26, 489
AfaI GTAC 3 cut(s) 382, 509, 676
AfiI CCNNNNNNNGG 3 cut(s) 343, 403, 684
AgsI TTSAA 3 cut(s) 82, 115, 759
AjnI CCWGG 1 cut(s) 510
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 1 cut(s) 773
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 3 cut(s) 333, 346, 390
ApeKI GCWGC 2 cut(s) 836, 932
ApoI RAATTY 2 cut(s) 26, 489
ArsI GACNNNNNNTTYG 2 cut(s) 646, 678
Asp718I GGTACC 1 cut(s) 674
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 5 cut(s) 305, 334, 346, 386, 648
AsuC2I CCSGG 2 cut(s) 162, 163
AsuHPI GGTGA 6 cut(s) 165, 421, 452, 568, 587, 787
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 3 cut(s) 305, 386, 648
BaeGI GKGCMC 1 cut(s) 131
BaeI ACNNNNGTAYC 2 cut(s) 615, 648
BanI GGYRCC 1 cut(s) 674
BbvI GCAGC 2 cut(s) 823, 944
BccI CCATC 4 cut(s) 401, 488, 592, 639
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 512
BciVI GTATCC 1 cut(s) 643
BclI TGATCA 1 cut(s) 324
BcnI CCSGG 2 cut(s) 162, 163
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 2 cut(s) 338, 719
BfuAI ACCTGC 1 cut(s) 88
BfuI GTATCC 1 cut(s) 643
BisI GCNGC 2 cut(s) 837, 933
BlsI GCNGC 2 cut(s) 838, 934
BmcAI AGTACT 1 cut(s) 382
Bme1390I CCNGG 3 cut(s) 162, 163, 512
Bme18I GGWCC 3 cut(s) 305, 386, 648
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 5 cut(s) 305, 334, 346, 386, 648
BmiI GGNNCC 1 cut(s) 676
BmrFI CCNGG 3 cut(s) 162, 163, 512
BmsI GCATC 3 cut(s) 482, 505, 538
BpmI CTGGAG 2 cut(s) 706, 770
BpuEI CTTGAG 1 cut(s) 361
BpuMI CCSGG 2 cut(s) 162, 163
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 4 cut(s) 55, 161, 228, 342
Bsc4I CCNNNNNNNGG 3 cut(s) 343, 403, 684
Bse1I ACTGG 3 cut(s) 388, 544, 633
BseBI CCWGG 1 cut(s) 512
BseDI CCNNGG 4 cut(s) 55, 161, 228, 342
BseGI GGATG 3 cut(s) 393, 520, 650
BseLI CCNNNNNNNGG 3 cut(s) 343, 403, 684
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 3 cut(s) 388, 544, 633
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 2 cut(s) 823, 944
BshFI GGCC 3 cut(s) 335, 348, 392
BshNI GGYRCC 1 cut(s) 674
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 2 cut(s) 162, 389
BslFI GGGAC 1 cut(s) 637
BslI CCNNNNNNNGG 3 cut(s) 343, 403, 684
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 637
BsnI GGCC 3 cut(s) 335, 348, 392
Bso31I GGTCTC 1 cut(s) 101
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 324, 765
BspACI CCGC 1 cut(s) 320
BspANI GGCC 3 cut(s) 335, 348, 392
BspCNI CTCAG 1 cut(s) 497
BspLI GGNNCC 1 cut(s) 676
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 1 cut(s) 773
BspQI GCTCTTC 1 cut(s) 253
BspT107I GGYRCC 1 cut(s) 674
BspTNI GGTCTC 1 cut(s) 101
BsrI ACTGG 3 cut(s) 388, 544, 633
BssECI CCNNGG 4 cut(s) 55, 161, 228, 342
BssMI GATC 2 cut(s) 324, 765
BssT1I CCWWGG 2 cut(s) 228, 342
Bst2UI CCWGG 1 cut(s) 512
Bst4CI ACNGT 1 cut(s) 146
Bst6I CTCTTC 2 cut(s) 99, 253
BstC8I GCNNGC 2 cut(s) 502, 701
BstDEI CTNAG 1 cut(s) 484
BstDSI CCRYGG 1 cut(s) 55
BstENI CCTNNNNNAGG 1 cut(s) 341
BstF5I GGATG 3 cut(s) 393, 520, 650
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 2 cut(s) 327, 768
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 2 cut(s) 324, 765
BstMWI GCNNNNNNNGC 1 cut(s) 951
BstNI CCWGG 1 cut(s) 512
BstNSI RCATGY 2 cut(s) 500, 508
BstSCI CCNGG 3 cut(s) 160, 161, 510
BstSLI GKGCMC 1 cut(s) 131
BstV1I GCAGC 2 cut(s) 823, 944
BstX2I RGATCY 1 cut(s) 765
BstXI CCANNNNNNTGG 1 cut(s) 664
BstYI RGATCY 1 cut(s) 765
BsuI GTATCC 1 cut(s) 643
BsuRI GGCC 3 cut(s) 335, 348, 392
BtgI CCRYGG 1 cut(s) 55
BtsCI GGATG 3 cut(s) 393, 520, 650
BtsIMutI CAGTG 1 cut(s) 626
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 502, 701
CfoI GCGC 1 cut(s) 265
Cfr13I GGNCC 5 cut(s) 305, 334, 346, 386, 648
Cfr9I CCCGGG 1 cut(s) 161
Csp6I GTAC 3 cut(s) 381, 508, 675
CviAII CATG 3 cut(s) 36, 497, 505
CviJI RGCY 7 cut(s) 54, 335, 341, 348, 392, 419, 703
CviKI_1 RGCY 7 cut(s) 54, 335, 341, 348, 392, 419, 703
CviQI GTAC 3 cut(s) 381, 508, 675
DdeI CTNAG 1 cut(s) 484
DpnI GATC 2 cut(s) 326, 767
DpnII GATC 2 cut(s) 324, 765
DraI TTTAAA 1 cut(s) 90
EaeI YGGCCR 1 cut(s) 390
Eam1104I CTCTTC 2 cut(s) 99, 253
EarI CTCTTC 2 cut(s) 99, 253
Eco130I CCWWGG 2 cut(s) 228, 342
Eco31I GGTCTC 1 cut(s) 101
Eco47I GGWCC 3 cut(s) 305, 386, 648
Eco88I CYCGRG 1 cut(s) 161
EcoNI CCTNNNNNAGG 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 510
EcoT14I CCWWGG 2 cut(s) 228, 342
ErhI CCWWGG 2 cut(s) 228, 342
FaeI CATG 3 cut(s) 39, 500, 508
FaqI GGGAC 1 cut(s) 637
FatI CATG 3 cut(s) 35, 496, 504
FbaI TGATCA 1 cut(s) 324
FblI GTMKAC 1 cut(s) 212
Fnu4HI GCNGC 2 cut(s) 837, 933
FokI GGATG 3 cut(s) 380, 527, 657
Fsp4HI GCNGC 2 cut(s) 837, 933
FspBI CTAG 2 cut(s) 338, 719
GlaI GCGC 1 cut(s) 264
GluI GCNGC 2 cut(s) 837, 933
GsuI CTGGAG 2 cut(s) 706, 770
HaeIII GGCC 3 cut(s) 335, 348, 392
HapII CCGG 2 cut(s) 162, 389
HhaI GCGC 1 cut(s) 265
Hin1II CATG 3 cut(s) 39, 500, 508
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HinfI GANTC 3 cut(s) 10, 115, 354
HpaII CCGG 2 cut(s) 162, 389
HphI GGTGA 6 cut(s) 165, 421, 452, 568, 587, 787
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 1 cut(s) 411
Hpy188III TCNNGA 3 cut(s) 23, 486, 769
Hpy8I GTNNAC 1 cut(s) 213
HpyAV CCTTC 3 cut(s) 326, 436, 705
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 365
HpyCH4V TGCA 6 cut(s) 247, 500, 699, 839, 891, 945
HpyF10VI GCNNNNNNNGC 1 cut(s) 951
HpyF3I CTNAG 1 cut(s) 484
HpySE526I ACGT 1 cut(s) 365
Hsp92II CATG 3 cut(s) 39, 500, 508
HspAI GCGC 1 cut(s) 263
KpnI GGTACC 1 cut(s) 678
Ksp22I TGATCA 1 cut(s) 324
Kzo9I GATC 2 cut(s) 324, 765
LguI GCTCTTC 1 cut(s) 253
Lsp1109I GCAGC 2 cut(s) 823, 944
LweI GCATC 3 cut(s) 482, 505, 538
MaeI CTAG 2 cut(s) 338, 719
MaeII ACGT 1 cut(s) 365
MaeIII GTNAC 1 cut(s) 440
MalI GATC 2 cut(s) 326, 767
MboI GATC 2 cut(s) 324, 765
MboII GAAGA 5 cut(s) 70, 116, 193, 270, 617
MfeI CAATTG 2 cut(s) 309, 401
MflI RGATCY 1 cut(s) 765
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 6 cut(s) 26, 309, 401, 489, 876, 884
MmeI TCCRAC 1 cut(s) 743
MnlI CCTC 8 cut(s) 310, 381, 407, 431, 463, 614, 745, 839
MseI TTAA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 2 cut(s) 162, 389
MspR9I CCNGG 3 cut(s) 162, 163, 512
MunI CAATTG 2 cut(s) 309, 401
MvaI CCWGG 1 cut(s) 512
MwoI GCNNNNNNNGC 1 cut(s) 951
NciI CCSGG 2 cut(s) 162, 163
NdeII GATC 2 cut(s) 324, 765
NlaIII CATG 3 cut(s) 39, 500, 508
NlaIV GGNNCC 1 cut(s) 676
NmuCI GTSAC 1 cut(s) 440
NspI RCATGY 2 cut(s) 500, 508
PciSI GCTCTTC 1 cut(s) 253
PfeI GAWTC 3 cut(s) 10, 115, 354
PkrI GCNGC 2 cut(s) 838, 934
Psp6I CCWGG 1 cut(s) 510
PspGI CCWGG 1 cut(s) 510
PspN4I GGNNCC 1 cut(s) 676
PspPI GGNCC 5 cut(s) 305, 334, 346, 386, 648
PsuI RGATCY 1 cut(s) 765
RsaI GTAC 3 cut(s) 382, 509, 676
RsaNI GTAC 3 cut(s) 381, 508, 675
SapI GCTCTTC 1 cut(s) 253
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 2 cut(s) 837, 933
Sau3AI GATC 2 cut(s) 324, 765
Sau96I GGNCC 5 cut(s) 305, 334, 346, 386, 648
ScaI AGTACT 1 cut(s) 382
ScrFI CCNGG 3 cut(s) 162, 163, 512
SduI GDGCHC 1 cut(s) 131
SfaNI GCATC 3 cut(s) 482, 505, 538
SinI GGWCC 3 cut(s) 305, 386, 648
SmaI CCCGGG 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 376
SmoI CTYRAG 1 cut(s) 376
Sse9I AATT 6 cut(s) 26, 309, 401, 489, 876, 884
SsiI CCGC 1 cut(s) 320
SspMI CTAG 2 cut(s) 338, 719
StyD4I CCNGG 3 cut(s) 160, 161, 510
StyI CCWWGG 2 cut(s) 228, 342
TaaI ACNGT 1 cut(s) 146
TaiI ACGT 1 cut(s) 368
TaqI TCGA 4 cut(s) 67, 123, 281, 598
TasI AATT 6 cut(s) 26, 309, 401, 489, 876, 884
TatI WGTACW 1 cut(s) 380
TfiI GAWTC 3 cut(s) 10, 115, 354
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TscAI CASTG 1 cut(s) 633
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 2 cut(s) 836, 932
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 3 cut(s) 17, 618, 718
TspMI CCCGGG 1 cut(s) 161
TspRI CASTG 1 cut(s) 633
VpaK11BI GGWCC 3 cut(s) 305, 386, 648
XagI CCTNNNNNAGG 1 cut(s) 341
XapI RAATTY 2 cut(s) 26, 489
XceI RCATGY 2 cut(s) 500, 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XmaI CCCGGG 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 212
XspI CTAG 2 cut(s) 338, 719
ZrmI AGTACT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.