Rh1CG283000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016065
Physical Location & Seq
Forward (+)
55452664 .. 55453349
686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG283000.1

Sequence Viewer

Length: 402 bp
ATGGCAACCCGAATGGAACCGCGGAGATATTCGACTAACATTCTTCAAATGTTTAAAGTGGCAGGAAGAGCGCAAAGTTGTGTTCAGTCGAAAAGATACTTGCTTCCTTCTGGTCCAATTGCCCTTCCGCTGATCATCTTGGCCCTAGCCAAGGGCCACCGAATCAACACCACGTTCCCTCTCTCAAGTACTGGTCCGGCCATCCTCCAATTGGTTCAGATTTCTGCTCTAACCTTCACCAATGGAGGTGACAACGACATCAAGTATGTGTTTTTCGAGGCATCAACCATCTCTGGAATTTTACATGCAAGCATGTACCTGGATGCTGTCATCTTACCTTACTATACTGGTTTTGATGCTCTGGTGAAATCAACTTTTTCGGGCTCTATGGAAGGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.48

Weight (kDa)

9.41

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41610
fragaria_vesca FvH4_7g18090 FvH4_7g18120
prunus_persica Prupe.2G203300_v2.0.a1
pyrus_communis pycom01g11750
rosa_chinensis RchiOBHm_Chr1g0361741
rosa_laevigata RLG00000027706
rosa_multiflora Rmu_sc0005733.1_g000002
rosa_roxburghii Rroxscaffold_4G00294730
rosa_rugosa Rorug01G0291300
rosa_samantha Rh1AG301700 Rh1BG264400 Rh1CG283000 Rh1DG294400
rosa_wichuraiana Rw1G026730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 22
AciI CCGC 3 cut(s) 20, 22, 128
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 1 cut(s) 297
AfaI GTAC 2 cut(s) 190, 317
AfiI CCNNNNNNNGG 2 cut(s) 151, 211
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 1 cut(s) 318
AoxI GGCC 3 cut(s) 141, 154, 198
ApoI RAATTY 1 cut(s) 297
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 4 cut(s) 113, 142, 154, 194
AsuHPI GGTGA 3 cut(s) 229, 260, 376
AvaII GGWCC 2 cut(s) 113, 194
BanII GRGCYC 1 cut(s) 386
BccI CCATC 2 cut(s) 209, 296
BciT130I CCWGG 1 cut(s) 320
BclI TGATCA 1 cut(s) 132
BfaI CTAG 2 cut(s) 146, 400
BmcAI AGTACT 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 320
Bme18I GGWCC 2 cut(s) 113, 194
BmgT120I GGNCC 4 cut(s) 113, 142, 154, 194
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 320
BmsI GCATC 3 cut(s) 290, 313, 346
BpuEI CTTGAG 1 cut(s) 169
BsaJI CCNNGG 2 cut(s) 20, 150
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 211
Bse1I ACTGG 2 cut(s) 196, 352
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 2 cut(s) 20, 150
BseGI GGATG 2 cut(s) 201, 328
BseLI CCNNNNNNNGG 2 cut(s) 151, 211
BseNI ACTGG 2 cut(s) 196, 352
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 3 cut(s) 143, 156, 200
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 2 cut(s) 151, 211
BsnI GGCC 3 cut(s) 143, 156, 200
Bsp1286I GDGCHC 1 cut(s) 386
Bsp143I GATC 1 cut(s) 132
BspACI CCGC 3 cut(s) 20, 22, 128
BspANI GGCC 3 cut(s) 143, 156, 200
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 18
BspQI GCTCTTC 1 cut(s) 61
BsrI ACTGG 2 cut(s) 196, 352
BssECI CCNNGG 2 cut(s) 20, 150
BssMI GATC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 310
BstDSI CCRYGG 1 cut(s) 20
BstENI CCTNNNNNAGG 1 cut(s) 149
BstF5I GGATG 2 cut(s) 201, 328
BstFNI CGCG 1 cut(s) 22
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 320
BstNSI RCATGY 2 cut(s) 308, 316
BstSCI CCNGG 1 cut(s) 318
BstUI CGCG 1 cut(s) 22
BsuRI GGCC 3 cut(s) 143, 156, 200
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 201, 328
Cac8I GCNNGC 1 cut(s) 310
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 4 cut(s) 113, 142, 154, 194
Cfr42I CCGCGG 1 cut(s) 23
Csp6I GTAC 2 cut(s) 189, 316
CviAII CATG 2 cut(s) 305, 313
CviJI RGCY 5 cut(s) 143, 149, 156, 200, 384
CviKI_1 RGCY 5 cut(s) 143, 149, 156, 200, 384
CviQI GTAC 2 cut(s) 189, 316
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
DraI TTTAAA 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 386
Eco47I GGWCC 2 cut(s) 113, 194
EcoNI CCTNNNNNAGG 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 386
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 2 cut(s) 308, 316
FaiI YATR 5 cut(s) 267, 306, 314, 345, 389
FatI CATG 2 cut(s) 304, 312
FbaI TGATCA 1 cut(s) 132
FokI GGATG 2 cut(s) 188, 335
FriOI GRGCYC 1 cut(s) 386
FspBI CTAG 2 cut(s) 146, 400
GlaI GCGC 1 cut(s) 72
HaeIII GGCC 3 cut(s) 143, 156, 200
HapII CCGG 1 cut(s) 197
HhaI GCGC 1 cut(s) 73
Hin1II CATG 2 cut(s) 308, 316
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 1 cut(s) 162
HpaII CCGG 1 cut(s) 197
HphI GGTGA 3 cut(s) 229, 260, 376
Hpy188I TCNGA 1 cut(s) 219
Hpy188III TCNNGA 1 cut(s) 294
HpyAV CCTTC 4 cut(s) 117, 134, 244, 386
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 173
Hsp92II CATG 2 cut(s) 308, 316
HspAI GCGC 1 cut(s) 71
Ksp22I TGATCA 1 cut(s) 132
KspI CCGCGG 1 cut(s) 23
Kzo9I GATC 1 cut(s) 132
LguI GCTCTTC 1 cut(s) 61
LpnPI CCDG 9 cut(s) 48, 96, 177, 210, 279, 305, 332, 333, 347
LweI GCATC 3 cut(s) 290, 313, 346
MaeI CTAG 2 cut(s) 146, 400
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 248
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 2 cut(s) 35, 78
MfeI CAATTG 2 cut(s) 117, 209
MhlI GDGCHC 1 cut(s) 386
MluCI AATT 3 cut(s) 117, 209, 297
MnlI CCTC 4 cut(s) 189, 215, 239, 271
MseI TTAA 1 cut(s) 54
MspA1I CMGCKG 2 cut(s) 22, 130
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 320
MunI CAATTG 2 cut(s) 117, 209
MvaI CCWGG 1 cut(s) 320
MvnI CGCG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 1 cut(s) 132
NlaIII CATG 2 cut(s) 308, 316
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 248
NspI RCATGY 2 cut(s) 308, 316
PciSI GCTCTTC 1 cut(s) 61
PfeI GAWTC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 318
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 4 cut(s) 113, 142, 154, 194
RsaI GTAC 2 cut(s) 190, 317
RsaNI GTAC 2 cut(s) 189, 316
SacII CCGCGG 1 cut(s) 23
SapI GCTCTTC 1 cut(s) 61
SaqAI TTAA 1 cut(s) 54
Sau3AI GATC 1 cut(s) 132
Sau96I GGNCC 4 cut(s) 113, 142, 154, 194
ScaI AGTACT 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 320
SduI GDGCHC 1 cut(s) 386
SetI ASST 5 cut(s) 176, 236, 250, 321, 340
SfaNI GCATC 3 cut(s) 290, 313, 346
Sfr303I CCGCGG 1 cut(s) 23
SgrBI CCGCGG 1 cut(s) 23
SinI GGWCC 2 cut(s) 113, 194
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 3 cut(s) 117, 209, 297
SsiI CCGC 3 cut(s) 20, 22, 128
SspMI CTAG 2 cut(s) 146, 400
StyD4I CCNGG 1 cut(s) 318
StyI CCWWGG 1 cut(s) 150
TaiI ACGT 1 cut(s) 176
TaqI TCGA 3 cut(s) 32, 89, 276
TasI AATT 3 cut(s) 117, 209, 297
TatI WGTACW 1 cut(s) 188
TfiI GAWTC 1 cut(s) 162
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseFI GTSAC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 113, 194
XagI CCTNNNNNAGG 1 cut(s) 149
XapI RAATTY 1 cut(s) 297
XceI RCATGY 2 cut(s) 308, 316
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XspI CTAG 2 cut(s) 146, 400
ZrmI AGTACT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.