Rmu_sc0005733.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005733.1
OG0016065
Physical Location & Seq
Reverse (-)
3004 .. 3978
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005733.1_g000002.1.cds

Sequence Viewer

Length: 975 bp
atgaattggaatctcttgcttcctgaatatccagcatggcaccccgaatggagccaaggagatattcgactaacattcttcaaatgtttaaaatggcaggtagaagaaaccttgaatccaatcgagtgcccttaccactactactgtgatagtgtttatcctggaaactactcacctgttgtggataatctggttcttttcttcgtagtgtctacatacttggcaaccttggtcataatggtaatgcacattgcaggaagagcgcaaagttgtgttcagtcgaaaagatacttgcttccttctggtccaattgcccttccactgatcatcttggccctagccaagggccaccgaatcaacaccacgttccctctctcaagtactggtccggccatcctccaattggttcagatttctgctctaaccttcaccaatggaggtgacaacgacatcaagtatgtgttttttgaggcatcaaccatctctggaattttacatgcaagcatgtacctggatgctgtcatcttaccttactatactggttttgatgctctggtgaaatcaactttttcgggtgagtgtccatcttgtgtatgtcgaaatgaagatttggtagtgggagggaaactggtatcctacacaggatggtccttgaccacttttttggttgtgggtaccctgtgctggagagttgtatgcaggctctatggaaggaaactaggaaagttcatactgattaggtctttgctggagggttcaagttggatcttgatgttaatagattgtgtttatctcaccacaaactcgccaccagagagattgatgttgcgagttgctgcttttggaggcatacttgttttgatttgcctttgtgtaactagagaattatgcacttgtatcacacaactacattctgtgtataaaagtagggcagcagatgtctgcaacagaagcaagatagaaatgacaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

36.26

Weight (kDa)

8.31

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41610
fragaria_vesca FvH4_7g18090 FvH4_7g18120
prunus_persica Prupe.2G203300_v2.0.a1
pyrus_communis pycom01g11750
rosa_chinensis RchiOBHm_Chr1g0361741
rosa_laevigata RLG00000027706
rosa_multiflora Rmu_sc0005733.1_g000002
rosa_roxburghii Rroxscaffold_4G00294730
rosa_rugosa Rorug01G0291300
rosa_samantha Rh1AG301700 Rh1BG264400 Rh1CG283000 Rh1DG294400
rosa_wichuraiana Rw1G026730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 88
Acc65I GGTACC 1 cut(s) 674
AccB1I GGYRCC 2 cut(s) 39, 674
AccI GTMKAC 1 cut(s) 212
AclWI GGATC 1 cut(s) 773
AcoI YGGCCR 1 cut(s) 390
AcsI RAATTY 1 cut(s) 489
AfaI GTAC 3 cut(s) 382, 509, 676
AfiI CCNNNNNNNGG 3 cut(s) 343, 403, 684
AgsI TTSAA 3 cut(s) 82, 115, 759
AjnI CCWGG 2 cut(s) 160, 510
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AlwI GGATC 1 cut(s) 773
AoxI GGCC 3 cut(s) 333, 346, 390
ApeKI GCWGC 2 cut(s) 836, 932
ApoI RAATTY 1 cut(s) 489
ArsI GACNNNNNNTTYG 2 cut(s) 646, 678
Asp718I GGTACC 1 cut(s) 674
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 5 cut(s) 305, 334, 346, 386, 648
AsuHPI GGTGA 6 cut(s) 165, 421, 452, 568, 587, 787
AvaII GGWCC 3 cut(s) 305, 386, 648
BaeGI GKGCMC 1 cut(s) 131
BanI GGYRCC 2 cut(s) 39, 674
BbvI GCAGC 2 cut(s) 823, 944
BccI CCATC 4 cut(s) 401, 488, 592, 639
BciT130I CCWGG 2 cut(s) 162, 512
BciVI GTATCC 1 cut(s) 643
BclI TGATCA 1 cut(s) 324
BfaI CTAG 3 cut(s) 338, 719, 879
BfuAI ACCTGC 1 cut(s) 88
BfuI GTATCC 1 cut(s) 643
BisI GCNGC 2 cut(s) 837, 933
BlsI GCNGC 2 cut(s) 838, 934
BmcAI AGTACT 1 cut(s) 382
Bme1390I CCNGG 2 cut(s) 162, 512
Bme18I GGWCC 3 cut(s) 305, 386, 648
BmgT120I GGNCC 5 cut(s) 305, 334, 346, 386, 648
BmiI GGNNCC 3 cut(s) 41, 53, 676
BmrFI CCNGG 2 cut(s) 162, 512
BmsI GCATC 3 cut(s) 482, 505, 538
BpmI CTGGAG 2 cut(s) 706, 770
BpuEI CTTGAG 1 cut(s) 361
BsaJI CCNNGG 3 cut(s) 55, 228, 342
Bsc4I CCNNNNNNNGG 3 cut(s) 343, 403, 684
Bse1I ACTGG 3 cut(s) 388, 544, 633
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 2 cut(s) 162, 512
BseDI CCNNGG 3 cut(s) 55, 228, 342
BseGI GGATG 3 cut(s) 393, 520, 650
BseLI CCNNNNNNNGG 3 cut(s) 343, 403, 684
BseMI GCAATG 1 cut(s) 249
BseNI ACTGG 3 cut(s) 388, 544, 633
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 2 cut(s) 823, 944
BshFI GGCC 3 cut(s) 335, 348, 392
BshNI GGYRCC 2 cut(s) 39, 674
BsiSI CCGG 1 cut(s) 389
BslI CCNNNNNNNGG 3 cut(s) 343, 403, 684
BsnI GGCC 3 cut(s) 335, 348, 392
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 324, 765
BspANI GGCC 3 cut(s) 335, 348, 392
BspLI GGNNCC 3 cut(s) 41, 53, 676
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 1 cut(s) 773
BspQI GCTCTTC 1 cut(s) 253
BspT107I GGYRCC 2 cut(s) 39, 674
BsrDI GCAATG 1 cut(s) 249
BsrI ACTGG 3 cut(s) 388, 544, 633
BssECI CCNNGG 3 cut(s) 55, 228, 342
BssMI GATC 2 cut(s) 324, 765
BssT1I CCWWGG 3 cut(s) 55, 228, 342
Bst2UI CCWGG 2 cut(s) 162, 512
Bst4CI ACNGT 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 502, 701
BstENI CCTNNNNNAGG 1 cut(s) 341
BstF5I GGATG 3 cut(s) 393, 520, 650
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 2 cut(s) 327, 768
BstMBI GATC 2 cut(s) 324, 765
BstMWI GCNNNNNNNGC 2 cut(s) 260, 951
BstNI CCWGG 2 cut(s) 162, 512
BstNSI RCATGY 2 cut(s) 500, 508
BstSCI CCNGG 2 cut(s) 160, 510
BstSLI GKGCMC 1 cut(s) 131
BstV1I GCAGC 2 cut(s) 823, 944
BstX2I RGATCY 1 cut(s) 765
BstXI CCANNNNNNTGG 1 cut(s) 664
BstYI RGATCY 1 cut(s) 765
BsuI GTATCC 1 cut(s) 643
BsuRI GGCC 3 cut(s) 335, 348, 392
BtsCI GGATG 3 cut(s) 393, 520, 650
BtsIMutI CAGTG 1 cut(s) 320
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 502, 701
CfoI GCGC 1 cut(s) 265
Cfr13I GGNCC 5 cut(s) 305, 334, 346, 386, 648
Csp6I GTAC 3 cut(s) 381, 508, 675
CviAII CATG 3 cut(s) 36, 497, 505
CviJI RGCY 6 cut(s) 54, 335, 341, 348, 392, 703
CviKI_1 RGCY 6 cut(s) 54, 335, 341, 348, 392, 703
CviQI GTAC 3 cut(s) 381, 508, 675
DpnI GATC 2 cut(s) 326, 767
DpnII GATC 2 cut(s) 324, 765
DraI TTTAAA 1 cut(s) 90
EaeI YGGCCR 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 253
Eco130I CCWWGG 3 cut(s) 55, 228, 342
Eco47I GGWCC 3 cut(s) 305, 386, 648
EcoNI CCTNNNNNAGG 1 cut(s) 341
EcoRII CCWGG 2 cut(s) 160, 510
EcoT14I CCWWGG 3 cut(s) 55, 228, 342
ErhI CCWWGG 3 cut(s) 55, 228, 342
FaeI CATG 3 cut(s) 39, 500, 508
FatI CATG 3 cut(s) 35, 496, 504
FbaI TGATCA 1 cut(s) 324
FblI GTMKAC 1 cut(s) 212
Fnu4HI GCNGC 2 cut(s) 837, 933
FokI GGATG 3 cut(s) 380, 527, 657
Fsp4HI GCNGC 2 cut(s) 837, 933
FspBI CTAG 3 cut(s) 338, 719, 879
GlaI GCGC 1 cut(s) 264
GluI GCNGC 2 cut(s) 837, 933
GsuI CTGGAG 2 cut(s) 706, 770
HaeIII GGCC 3 cut(s) 335, 348, 392
HapII CCGG 1 cut(s) 389
HhaI GCGC 1 cut(s) 265
Hin1II CATG 3 cut(s) 39, 500, 508
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HinfI GANTC 3 cut(s) 10, 115, 354
HpaII CCGG 1 cut(s) 389
HphI GGTGA 6 cut(s) 165, 421, 452, 568, 587, 787
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 1 cut(s) 411
Hpy188III TCNNGA 3 cut(s) 23, 486, 769
Hpy8I GTNNAC 1 cut(s) 213
HpyAV CCTTC 4 cut(s) 309, 326, 436, 705
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 365
HpyCH4V TGCA 6 cut(s) 247, 254, 500, 699, 891, 945
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 951
HpySE526I ACGT 1 cut(s) 365
Hsp92II CATG 3 cut(s) 39, 500, 508
HspAI GCGC 1 cut(s) 263
KpnI GGTACC 1 cut(s) 678
Ksp22I TGATCA 1 cut(s) 324
Kzo9I GATC 2 cut(s) 324, 765
LguI GCTCTTC 1 cut(s) 253
LmnI GCTCC 1 cut(s) 51
Lsp1109I GCAGC 2 cut(s) 823, 944
LweI GCATC 3 cut(s) 482, 505, 538
MaeI CTAG 3 cut(s) 338, 719, 879
MaeII ACGT 1 cut(s) 365
MaeIII GTNAC 2 cut(s) 440, 874
MalI GATC 2 cut(s) 326, 767
MboI GATC 2 cut(s) 324, 765
MboII GAAGA 5 cut(s) 70, 116, 193, 270, 617
MfeI CAATTG 2 cut(s) 309, 401
MflI RGATCY 1 cut(s) 765
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 5 cut(s) 4, 309, 401, 489, 884
MmeI TCCRAC 1 cut(s) 743
MnlI CCTC 7 cut(s) 381, 407, 431, 463, 614, 745, 839
MseI TTAA 2 cut(s) 89, 776
MspI CCGG 1 cut(s) 389
MspR9I CCNGG 2 cut(s) 162, 512
MunI CAATTG 2 cut(s) 309, 401
MvaI CCWGG 2 cut(s) 162, 512
MwoI GCNNNNNNNGC 2 cut(s) 260, 951
NdeII GATC 2 cut(s) 324, 765
NlaIII CATG 3 cut(s) 39, 500, 508
NlaIV GGNNCC 3 cut(s) 41, 53, 676
NmuCI GTSAC 1 cut(s) 440
NspI RCATGY 2 cut(s) 500, 508
PciSI GCTCTTC 1 cut(s) 253
PfeI GAWTC 3 cut(s) 10, 115, 354
PfoI TCCNGGA 1 cut(s) 160
PkrI GCNGC 2 cut(s) 838, 934
Psp6I CCWGG 2 cut(s) 160, 510
PspGI CCWGG 2 cut(s) 160, 510
PspN4I GGNNCC 3 cut(s) 41, 53, 676
PspPI GGNCC 5 cut(s) 305, 334, 346, 386, 648
PsuI RGATCY 1 cut(s) 765
RsaI GTAC 3 cut(s) 382, 509, 676
RsaNI GTAC 3 cut(s) 381, 508, 675
SapI GCTCTTC 1 cut(s) 253
SaqAI TTAA 2 cut(s) 89, 776
SatI GCNGC 2 cut(s) 837, 933
Sau3AI GATC 2 cut(s) 324, 765
Sau96I GGNCC 5 cut(s) 305, 334, 346, 386, 648
ScaI AGTACT 1 cut(s) 382
ScrFI CCNGG 2 cut(s) 162, 512
SduI GDGCHC 1 cut(s) 131
SfaNI GCATC 3 cut(s) 482, 505, 538
SinI GGWCC 3 cut(s) 305, 386, 648
SmlI CTYRAG 1 cut(s) 376
SmoI CTYRAG 1 cut(s) 376
Sse9I AATT 5 cut(s) 4, 309, 401, 489, 884
SspMI CTAG 3 cut(s) 338, 719, 879
StyD4I CCNGG 2 cut(s) 160, 510
StyI CCWWGG 3 cut(s) 55, 228, 342
TaaI ACNGT 1 cut(s) 146
TaiI ACGT 1 cut(s) 368
TaqI TCGA 4 cut(s) 67, 123, 281, 598
TasI AATT 5 cut(s) 4, 309, 401, 489, 884
TatI WGTACW 1 cut(s) 380
TfiI GAWTC 3 cut(s) 10, 115, 354
Tru1I TTAA 2 cut(s) 89, 776
Tru9I TTAA 2 cut(s) 89, 776
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 2 cut(s) 836, 932
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 3 cut(s) 17, 618, 718
TspRI CASTG 1 cut(s) 327
VpaK11BI GGWCC 3 cut(s) 305, 386, 648
XagI CCTNNNNNAGG 1 cut(s) 341
XapI RAATTY 1 cut(s) 489
XceI RCATGY 2 cut(s) 500, 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 212
XspI CTAG 3 cut(s) 338, 719, 879
ZrmI AGTACT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.