FvH4_7g18120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016065
Physical Location & Seq
Forward (+)
15223363 .. 15224079
717 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18120.t1

Sequence Viewer

Length: 717 bp
ATGGTAATGCACATTGCAGGAAGAGCGCAAAGTTGTGTTCAGTCGAAAAGATACTTGCTTCCTTCTGGTCCAATTGGCCTTCCGGTGATCATCTTTGCTCTAGCCAAGGGCCACCGTATCAACACCACATTCCCTCTCTCAAGTATTGGTCCGGCCATCCTGCAACTGGTTCAGATTTCAGCTCTAGCCTTCGCCAATGGAGGTGACAACGACATCAAGTATGTGTTCTTCGAGGCATCAACCATCTCTGGAATTTTACATGCAAGCATGTACCTGGATGCTGTTGTCTTACATTACTACACCGGTCTTGATGCTCTGGTGAAATCAACGTTTTCGGGTGAGTGTCCATCTTGTGTGTGTCGAAATGAAGATTTGGTAGTGGGAGGAACACTGGTGTCCTACAGAGGATGGGGTTTAACCACTTTCTTGGTTGTGGCTACCCTGTGCTGGAGAGTTATAAGCATGCTCTATGGAAGGAAATTAGGAAAGTTCATACTGGTCTCTGCTGGAGAGTTCAAGTTGGATCTTGGAAATCATAGATTGTGTTTATCTCTCCACAAATTCGCCACCAGAGAAGTTGATGTTGCAAGTTGCTGCTTTCGGAGGCATACTTGTTTTGATTTGCCTTTGTGTAATCAGAGAATTATGCACTTGTTTAACACATCTACGTTGTGTATAAAAGTAGGACAGAGGATGTTTGCAACAGAAGCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

26.22

Weight (kDa)

9.11

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41610
fragaria_vesca FvH4_7g18090 FvH4_7g18120
prunus_persica Prupe.2G203300_v2.0.a1
pyrus_communis pycom01g11750
rosa_chinensis RchiOBHm_Chr1g0361741
rosa_laevigata RLG00000027706
rosa_multiflora Rmu_sc0005733.1_g000002
rosa_roxburghii Rroxscaffold_4G00294730
rosa_rugosa Rorug01G0291300
rosa_samantha Rh1AG301700 Rh1BG264400 Rh1CG283000 Rh1DG294400
rosa_wichuraiana Rw1G026730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 458
AclI AACGTT 1 cut(s) 329
AclWI GGATC 1 cut(s) 531
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 2 cut(s) 252, 560
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 2 cut(s) 166, 447
AgeI ACCGGT 1 cut(s) 302
AgsI TTSAA 1 cut(s) 517
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw26I GTCTC 1 cut(s) 505
AlwI GGATC 1 cut(s) 531
AoxI GGCC 3 cut(s) 76, 109, 153
ApeKI GCWGC 1 cut(s) 594
ApoI RAATTY 2 cut(s) 252, 560
AsiGI ACCGGT 1 cut(s) 302
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 3 cut(s) 68, 109, 149
AsuHPI GGTGA 4 cut(s) 97, 215, 331, 350
AvaII GGWCC 2 cut(s) 68, 149
BarI GAAGNNNNNNTAC 2 cut(s) 212, 244
BbvI GCAGC 1 cut(s) 581
BccI CCATC 4 cut(s) 164, 251, 355, 402
BciT130I CCWGG 1 cut(s) 275
BclI TGATCA 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 505
BfaI CTAG 2 cut(s) 101, 185
BfmI CTRYAG 1 cut(s) 400
BisI GCNGC 1 cut(s) 595
BlsI GCNGC 1 cut(s) 596
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 2 cut(s) 68, 149
BmgT120I GGNCC 3 cut(s) 68, 109, 149
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 3 cut(s) 245, 268, 301
BpmI CTGGAG 2 cut(s) 469, 528
BpuEI CTTGAG 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 505
BsaJI CCNNGG 1 cut(s) 105
BsaWI WCCGGW 2 cut(s) 82, 302
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 447
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 3 cut(s) 171, 396, 501
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 4 cut(s) 156, 283, 413, 699
BseLI CCNNNNNNNGG 2 cut(s) 166, 447
BseMI GCAATG 1 cut(s) 12
BseNI ACTGG 3 cut(s) 171, 396, 501
BseXI GCAGC 1 cut(s) 581
BshFI GGCC 3 cut(s) 78, 111, 155
BshTI ACCGGT 1 cut(s) 302
BsiSI CCGG 3 cut(s) 83, 152, 303
BslI CCNNNNNNNGG 2 cut(s) 166, 447
BsmAI GTCTC 1 cut(s) 505
BsnI GGCC 3 cut(s) 78, 111, 155
Bso31I GGTCTC 1 cut(s) 505
Bsp143I GATC 2 cut(s) 87, 523
BspANI GGCC 3 cut(s) 78, 111, 155
BspPI GGATC 1 cut(s) 531
BspQI GCTCTTC 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 505
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 3 cut(s) 171, 396, 501
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 2 cut(s) 87, 523
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 265, 464
BstF5I GGATG 4 cut(s) 156, 283, 413, 699
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 90, 526
BstMAI GTCTC 1 cut(s) 505
BstMBI GATC 2 cut(s) 87, 523
BstMWI GCNNNNNNNGC 2 cut(s) 23, 707
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 3 cut(s) 263, 271, 466
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 1 cut(s) 400
BstV1I GCAGC 1 cut(s) 581
BstX2I RGATCY 1 cut(s) 523
BstXI CCANNNNNNTGG 1 cut(s) 427
BstYI RGATCY 1 cut(s) 523
BsuRI GGCC 3 cut(s) 78, 111, 155
BtsCI GGATG 4 cut(s) 156, 283, 413, 699
BtsIMutI CAGTG 1 cut(s) 389
Cac8I GCNNGC 2 cut(s) 265, 464
CfoI GCGC 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 3 cut(s) 68, 109, 149
Csp6I GTAC 1 cut(s) 271
CspAI ACCGGT 1 cut(s) 302
CviAII CATG 3 cut(s) 260, 268, 463
CviJI RGCY 7 cut(s) 78, 104, 111, 155, 182, 188, 437
CviKI_1 RGCY 7 cut(s) 78, 104, 111, 155, 182, 188, 437
CviQI GTAC 1 cut(s) 271
DpnI GATC 2 cut(s) 89, 525
DpnII GATC 2 cut(s) 87, 523
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 505
Eco47I GGWCC 2 cut(s) 68, 149
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 3 cut(s) 263, 271, 466
FatI CATG 3 cut(s) 259, 267, 462
FbaI TGATCA 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 595
FokI GGATG 4 cut(s) 143, 290, 420, 706
Fsp4HI GCNGC 1 cut(s) 595
FspBI CTAG 2 cut(s) 101, 185
GlaI GCGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 595
GsuI CTGGAG 2 cut(s) 469, 528
HaeIII GGCC 3 cut(s) 78, 111, 155
HapII CCGG 3 cut(s) 83, 152, 303
HhaI GCGC 1 cut(s) 28
Hin1II CATG 3 cut(s) 263, 271, 466
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HpaII CCGG 3 cut(s) 83, 152, 303
HphI GGTGA 4 cut(s) 97, 215, 331, 350
Hpy188I TCNGA 3 cut(s) 174, 603, 639
Hpy188III TCNNGA 2 cut(s) 249, 308
HpyAV CCTTC 4 cut(s) 72, 89, 199, 468
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 2 cut(s) 329, 668
HpyCH4V TGCA 7 cut(s) 10, 17, 163, 263, 587, 649, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 707
HpySE526I ACGT 2 cut(s) 329, 668
Hsp92II CATG 3 cut(s) 263, 271, 466
HspAI GCGC 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 87
Kzo9I GATC 2 cut(s) 87, 523
LguI GCTCTTC 1 cut(s) 16
Lsp1109I GCAGC 1 cut(s) 581
LweI GCATC 3 cut(s) 245, 268, 301
MaeI CTAG 2 cut(s) 101, 185
MaeII ACGT 2 cut(s) 329, 668
MaeIII GTNAC 1 cut(s) 203
MalI GATC 2 cut(s) 89, 525
MboI GATC 2 cut(s) 87, 523
MboII GAAGA 3 cut(s) 33, 220, 380
MfeI CAATTG 1 cut(s) 72
MflI RGATCY 1 cut(s) 523
MluCI AATT 5 cut(s) 72, 252, 479, 560, 642
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 7 cut(s) 144, 194, 226, 377, 398, 597, 684
MseI TTAA 2 cut(s) 416, 657
MspI CCGG 3 cut(s) 83, 152, 303
MspR9I CCNGG 1 cut(s) 275
MunI CAATTG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 23, 707
NdeII GATC 2 cut(s) 87, 523
NlaIII CATG 3 cut(s) 263, 271, 466
NmuCI GTSAC 1 cut(s) 203
NspI RCATGY 3 cut(s) 263, 271, 466
PaeI GCATGC 1 cut(s) 466
PciSI GCTCTTC 1 cut(s) 16
PinAI ACCGGT 1 cut(s) 302
PkrI GCNGC 1 cut(s) 596
PsiI TTATAA 1 cut(s) 458
Psp1406I AACGTT 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspPI GGNCC 3 cut(s) 68, 109, 149
PsuI RGATCY 1 cut(s) 523
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SapI GCTCTTC 1 cut(s) 16
SaqAI TTAA 2 cut(s) 416, 657
SatI GCNGC 1 cut(s) 595
Sau3AI GATC 2 cut(s) 87, 523
Sau96I GGNCC 3 cut(s) 68, 109, 149
ScrFI CCNGG 1 cut(s) 275
SetI ASST 5 cut(s) 184, 205, 276, 332, 671
SfaNI GCATC 3 cut(s) 245, 268, 301
SfcI CTRYAG 1 cut(s) 400
SinI GGWCC 2 cut(s) 68, 149
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
SphI GCATGC 1 cut(s) 466
Sse9I AATT 5 cut(s) 72, 252, 479, 560, 642
SspMI CTAG 2 cut(s) 101, 185
StyD4I CCNGG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 2 cut(s) 332, 671
TaqI TCGA 3 cut(s) 44, 231, 361
TasI AATT 5 cut(s) 72, 252, 479, 560, 642
Tru1I TTAA 2 cut(s) 416, 657
Tru9I TTAA 2 cut(s) 416, 657
TscAI CASTG 1 cut(s) 396
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 594
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 2 cut(s) 381, 481
TspRI CASTG 1 cut(s) 396
VpaK11BI GGWCC 2 cut(s) 68, 149
XapI RAATTY 2 cut(s) 252, 560
XceI RCATGY 3 cut(s) 263, 271, 466
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 2 cut(s) 101, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.