Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009625

Physical Location & Seq

Genomic Coordinates Forward (+)

15300693 .. 15308072

Gene Structure 7380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g18300.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1734 bp

ATGCTCACCGGAGTCCAGTACAAATTTTCATATCTCAAGACTTGGAGGGGTGTTAAGCATTACTCAACTGCAGATCCTTTGTATGCTGTCCTTGATATGCCTGCTTTGTCTCCTACTATGAGTCAAGGAAACATTGCAAAATGGAGGAAGAAAGAGGGAGATAAGATTGCAGTGGGTGATGTGCTGTGTGAAATTGAAACTGACAAAGCGACTCTTGAATTTGAAAGTCTTGAGGAAGGGTTTCTAGCCAAGATACTGGTACCTGAAGGCTCAAAGGATGTGCCTGTGGGACAACCTATTGCAGTAACGGTCGAGGATCAAGATGAAATCCAAAACATCCCTGCTAATATTGGGGGTGGATCTGAGGTGAAAGAGGACATACCACAAAATCAGAAAGATGGAGCACAAGATACAAGTTCTGTGGGGATAAACACAGCAGACCTTCCTCCTCACATTGTTGTTGAAATGCCAGCGTTGTCTCCAACAATGAGCCAAGGTAACATTGCTGTGTGGAGAAAGAAAGAAGGAGATAAGATAGAAGTTGGTGATGTGTTGTGTGAGATAGAGACGGACAAAGCAACCCTTGAATTTGAATGCCTTGAAGAGGGATATTTGGCTAAAATACTAGCACCTGAAGGCTCAAAAGATGTGGCTGTTGGCCAACCAATTGCAGTAACAGTTGAGGATGCAGCTGATTTGGAAACTGTAAAGAGTAGTGTCAGTGTTGGTTCAAGTGTCAAAGAAGAAAAACCCATCCATCAGGATACTAAACATGAAAGTGGAGCTGTAAAAACAACCAGCGTCTTAAGGATCAGTCCAGCAGCTAAGATGCTAATTCTAGAACATGGATTGGATAAATCGTCATTGAGGGCATCAGGTGCTCACGGGACACTACTGAAAGGTGATGTTTTAGCTGCAATAAAGTCAGGAATTGGATCTTCAAAAGTTTCATCTAAAGAGAAAGCACCTTCATCTCCTCAAGCACATACAAAGATAGCTTCAGCATCAGCAGATTCAAGGTCCTTAAAGCAGATAGATTTTGAAGAGTTTCCCAACAGTCAAATTCGCAAGGTGATAGCTACTAGGTTGCTGGAATCAAAACAAAACATACCACATTTGTACTTATCCGCAGATGTTATACTGGATCCACTTCTTTCTCTTAGAAAGGATCTTAAAGAGCAGCATAATGTTAAAGTTTCAGTGAATGACATTGTCATTAGAGCTGTAGCTATTGCACTGAGAAATGTACCGGAAGCAAATGCTTACTGGGATGCTGAAAAAGGAGAAGCCATTCTTTGTGATTCTGTTGATATATCAATTGCTGTCGCTACCGACAAGGGTCTGATGACTCCGATTGTGAAAAATGCGGATCAGAAAACAATATCTGCAATCTCCTCAGAGGTCAAGGAGCTAGCTGAGAAGGCACGGGCAGGAAAGCTTAAGCCAATTGAATTCCAAGGAGGGACTTTCAGCATTTCAAATTTGGGGATGTTTCCGGTGGATCACTTCTGTGCAATTATAAATCCACCTCAGGCCAGTATCCTTGCTGTAGGCAGAGGCAACAAAGTTGTTCAACCAGTAATTGGGAGTGATGGAATTGAAAGGCCAGCAGTTGTCACAAAAATGAACTTGACATTATCAGCAGATCATCGTGTTTTTGATGGCAAAGTTGGAGGTTCATTCCTCTCAGCTTTACAATCAAACTTCAGTGACATCCGAAGACTTCTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0045254 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

578

Amino Acids

61.9

Weight (kDa)

5.49

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Biotin_lipoyl	PF00364	85 - 156	3.7e-18	Biotin-requiring enzyme
Biotin_lipoyl	PF00364	208 - 279	4.3e-17	Biotin-requiring enzyme
E3_binding	PF02817	324 - 358	8.1e-07	e3 binding domain
2-oxoacid_dh	PF00198	401 - 611	3.8e-71	2-oxoacid dehydrogenases acyltransferase (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52200 AT3G52200
fragaria_vesca	FvH4_7g18300 FvH4_7g18300 FvH4_7g18300
malus_domestica	MD01G1099700.v1.1 MD07G1166600.v1.1
prunus_persica	Prupe.2G204600_v2.0.a1 Prupe.2G204600_v2.0.a1 Prupe.2G204600_v2.0.a1 Prupe.2G204600_v2.0.a1
pyrus_communis	pycom01g12680 pycom07g16180
rosa_chinensis	RchiOBHm_Chr1g0361921
rosa_laevigata	RLG00000027686
rosa_multiflora	Rmu_sc0008041.1_g000008
rosa_roxburghii	Rroxscaffold_4G00294620
rosa_rugosa	Rorug01G0292400
rosa_samantha	Rh1AG302900 Rh1CG284300 Rh1DG296100
rosa_wichuraiana	Rw1G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1520
Acc65I	GGTACC	1 cut(s)	259
AccB1I	GGYRCC	1 cut(s)	259
AccB7I	CCANNNNNTGG	1 cut(s)	1583
AciI	CCGC	2 cut(s)	1128, 1367
AcoI	YGGCCR	1 cut(s)	658
AcsI	RAATTY	6 cut(s)	23, 218, 587, 1062, 1451, 1480
AcuI	CTGAAG	4 cut(s)	285, 654, 984, 1690
AfaI	GTAC	4 cut(s)	20, 261, 1121, 1248
AfiI	CCNNNNNNNGG	2 cut(s)	604, 1583
AflII	CTTAAG	2 cut(s)	805, 1439
AleI	CACNNNNGTG	1 cut(s)	1509
Alw21I	GWGCWC	2 cut(s)	406, 883
Alw26I	GTCTC	3 cut(s)	114, 483, 560
AoxI	GGCC	3 cut(s)	658, 1533, 1604
ApeKI	GCWGC	4 cut(s)	689, 821, 914, 1180
ApoI	RAATTY	6 cut(s)	23, 218, 587, 1062, 1451, 1480
Asp700I	GAANNNNTTC	3 cut(s)	240, 1047, 1290
Asp718I	GGTACC	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	1020
AsuHPI	GGTGA	5 cut(s)	188, 379, 557, 914, 1084
AsuNHI	GCTAGC	1 cut(s)	1411
AvaII	GGWCC	1 cut(s)	1020
AxyI	CCTNAGG	1 cut(s)	1530
BalI	TGGCCA	1 cut(s)	660
BamHI	GGATCC	1 cut(s)	1144
BanI	GGYRCC	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	1726
Bbv12I	GWGCWC	2 cut(s)	406, 883
BbvI	GCAGC	4 cut(s)	701, 833, 901, 1192
BccI	CCATC	5 cut(s)	392, 761, 765, 1586, 1655
BciVI	GTATCC	2 cut(s)	757, 1550
BcoDI	GTCTC	3 cut(s)	114, 483, 560
BfaI	CTAG	5 cut(s)	245, 626, 839, 1083, 1412
BfmI	CTRYAG	3 cut(s)	69, 1224, 1548
BfrI	CTTAAG	2 cut(s)	805, 1439
BfuI	GTATCC	2 cut(s)	757, 1550
BisI	GCNGC	4 cut(s)	690, 822, 915, 1181
BlsI	GCNGC	4 cut(s)	691, 823, 916, 1182
Bme18I	GGWCC	1 cut(s)	1020
BmgT120I	GGNCC	1 cut(s)	1020
BmiI	GGNNCC	2 cut(s)	261, 1146
BmrI	ACTGGG	1 cut(s)	1276
BmsI	GCATC	5 cut(s)	676, 819, 881, 1013, 1261
BmtI	GCTAGC	1 cut(s)	1415
BmuI	ACTGGG	1 cut(s)	1276
BoxI	GACNNNNGTC	1 cut(s)	1338
BpiI	GAAGAC	1 cut(s)	1726
BpuEI	CTTGAG	3 cut(s)	20, 251, 963
BsaJI	CCNNGG	2 cut(s)	493, 1456
BsaWI	WCCGGW	3 cut(s)	8, 1249, 1495
Bsc4I	CCNNNNNNNGG	2 cut(s)	604, 1583
Bse1I	ACTGG	6 cut(s)	16, 261, 1146, 1271, 1536, 1577
Bse21I	CCTNAGG	1 cut(s)	1530
Bse3DI	GCAATG	2 cut(s)	132, 501
BseDI	CCNNGG	2 cut(s)	493, 1456
BseGI	GGATG	7 cut(s)	283, 336, 691, 753, 1276, 1494, 1713
BseLI	CCNNNNNNNGG	2 cut(s)	604, 1583
BseMI	GCAATG	2 cut(s)	132, 501
BseMII	CTCAG	6 cut(s)	354, 1229, 1407, 1410, 1544, 1701
BseNI	ACTGG	6 cut(s)	16, 261, 1146, 1271, 1536, 1577
BseRI	GAGGAG	3 cut(s)	438, 966, 1384
BseXI	GCAGC	4 cut(s)	701, 833, 901, 1192
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	3 cut(s)	660, 1535, 1606
BshNI	GGYRCC	1 cut(s)	259
BsiEI	CGRYCG	1 cut(s)	312
BsiHKAI	GWGCWC	2 cut(s)	406, 883
BsiSI	CCGG	3 cut(s)	9, 1250, 1496
BslFI	GGGAC	3 cut(s)	303, 901, 1477
BslI	CCNNNNNNNGG	2 cut(s)	604, 1583
BsmAI	GTCTC	3 cut(s)	114, 483, 560
BsmBI	CGTCTC	1 cut(s)	560
BsmFI	GGGAC	3 cut(s)	303, 901, 1477
BsmI	GAATGC	1 cut(s)	599
BsnI	GGCC	3 cut(s)	660, 1535, 1606
Bsp1286I	GDGCHC	2 cut(s)	406, 883
BspACI	CCGC	2 cut(s)	1128, 1367
BspANI	GGCC	3 cut(s)	660, 1535, 1606
BspCNI	CTCAG	6 cut(s)	355, 1230, 1408, 1409, 1543, 1700
BspLI	GGNNCC	2 cut(s)	261, 1146
BspMAI	CTGCAG	1 cut(s)	73
BspOI	GCTAGC	1 cut(s)	1415
BspT107I	GGYRCC	1 cut(s)	259
BspTI	CTTAAG	2 cut(s)	805, 1439
BsrDI	GCAATG	2 cut(s)	132, 501
BsrI	ACTGG	6 cut(s)	16, 261, 1146, 1271, 1536, 1577
BssECI	CCNNGG	2 cut(s)	493, 1456
BssT1I	CCWWGG	2 cut(s)	493, 1456
Bst4CI	ACNGT	4 cut(s)	310, 679, 706, 1058
Bst6I	CTCTTC	2 cut(s)	597, 1038
BstAFI	CTTAAG	2 cut(s)	805, 1439
BstAPI	GCANNNNNTGC	1 cut(s)	878
BstC8I	GCNNGC	4 cut(s)	102, 471, 1413, 1608
BstDEI	CTNAG	8 cut(s)	363, 825, 1160, 1238, 1396, 1416, 1530, 1687
BstENI	CCTNNNNNAGG	1 cut(s)	602
BstF5I	GGATG	7 cut(s)	283, 336, 691, 753, 1276, 1494, 1713
BstMAI	GTCTC	3 cut(s)	114, 483, 560
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	2 cut(s)	878, 1421
BstPAI	GACNNNNGTC	1 cut(s)	1338
BstSFI	CTRYAG	3 cut(s)	69, 1224, 1548
BstV1I	GCAGC	4 cut(s)	701, 833, 901, 1192
BstV2I	GAAGAC	1 cut(s)	1726
BstX2I	RGATCY	5 cut(s)	73, 359, 935, 1144, 1168
BstXI	CCANNNNNNTGG	1 cut(s)	256
BstYI	RGATCY	5 cut(s)	73, 359, 935, 1144, 1168
Bsu36I	CCTNAGG	1 cut(s)	1530
BsuI	GTATCC	2 cut(s)	757, 1550
BsuRI	GGCC	3 cut(s)	660, 1535, 1606
BtsCI	GGATG	7 cut(s)	283, 336, 691, 753, 1276, 1494, 1713
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	5 cut(s)	177, 727, 1206, 1235, 1714
Cac8I	GCNNGC	4 cut(s)	102, 471, 1413, 1608
Cfr13I	GGNCC	1 cut(s)	1020
CseI	GACGC	1 cut(s)	790
Csp6I	GTAC	4 cut(s)	19, 260, 1120, 1247
CspCI	CAANNNNNGTGG	4 cut(s)	402, 437, 630, 665
CviAII	CATG	2 cut(s)	773, 845
CviQI	GTAC	4 cut(s)	19, 260, 1120, 1247
DdeI	CTNAG	8 cut(s)	363, 825, 1160, 1238, 1396, 1416, 1530, 1687
EaeI	YGGCCR	1 cut(s)	658
Eam1104I	CTCTTC	2 cut(s)	597, 1038
EarI	CTCTTC	2 cut(s)	597, 1038
Eco130I	CCWWGG	2 cut(s)	493, 1456
Eco47I	GGWCC	1 cut(s)	1020
Eco57I	CTGAAG	4 cut(s)	285, 654, 984, 1690
Eco81I	CCTNAGG	1 cut(s)	1530
EcoNI	CCTNNNNNAGG	1 cut(s)	602
EcoO109I	RGGNCCY	1 cut(s)	1020
EcoRI	GAATTC	1 cut(s)	1451
EcoT14I	CCWWGG	2 cut(s)	493, 1456
ErhI	CCWWGG	2 cut(s)	493, 1456
Esp3I	CGTCTC	1 cut(s)	560
FaeI	CATG	2 cut(s)	776, 848
FalI	AAGNNNNNCTT	6 cut(s)	198, 230, 567, 599, 1278, 1310
FaqI	GGGAC	3 cut(s)	303, 901, 1477
FatI	CATG	2 cut(s)	772, 844
Fnu4HI	GCNGC	4 cut(s)	690, 822, 915, 1181
FokI	GGATG	7 cut(s)	290, 323, 698, 740, 1283, 1501, 1700
Fsp4HI	GCNGC	4 cut(s)	690, 822, 915, 1181
FspBI	CTAG	5 cut(s)	245, 626, 839, 1083, 1412
GluI	GCNGC	4 cut(s)	690, 822, 915, 1181
HaeIII	GGCC	3 cut(s)	660, 1535, 1606
HapII	CCGG	3 cut(s)	9, 1250, 1496
HgaI	GACGC	1 cut(s)	790
Hin1II	CATG	2 cut(s)	776, 848
HindIII	AAGCTT	1 cut(s)	1436
HinfI	GANTC	7 cut(s)	12, 121, 211, 1013, 1094, 1301, 1348
HpaII	CCGG	3 cut(s)	9, 1250, 1496
HphI	GGTGA	5 cut(s)	188, 379, 557, 914, 1084
Hpy188I	TCNGA	7 cut(s)	364, 393, 1344, 1353, 1374, 1399, 1718
Hpy188III	TCNNGA	7 cut(s)	37, 215, 230, 320, 761, 839, 927
HpyAV	CCTTC	7 cut(s)	230, 260, 452, 518, 629, 978, 1414
HpyCH4III	ACNGT	4 cut(s)	310, 679, 706, 1058
HpyF10VI	GCNNNNNNNGC	2 cut(s)	878, 1421
HpyF3I	CTNAG	8 cut(s)	363, 825, 1160, 1238, 1396, 1416, 1530, 1687
Hsp92II	CATG	2 cut(s)	776, 848
KpnI	GGTACC	1 cut(s)	263
LmnI	GCTCC	3 cut(s)	401, 782, 1408
Lsp1109I	GCAGC	4 cut(s)	701, 833, 901, 1192
LweI	GCATC	5 cut(s)	676, 819, 881, 1013, 1261
MaeI	CTAG	5 cut(s)	245, 626, 839, 1083, 1412
MaeIII	GTNAC	5 cut(s)	304, 497, 673, 1615, 1709
MboII	GAAGA	6 cut(s)	160, 614, 755, 930, 1055, 1731
MfeI	CAATTG	3 cut(s)	666, 1317, 1446
MflI	RGATCY	5 cut(s)	73, 359, 935, 1144, 1168
MhlI	GDGCHC	2 cut(s)	406, 883
MlsI	TGGCCA	1 cut(s)	660
MluNI	TGGCCA	1 cut(s)	660
MlyI	GAGTC	4 cut(s)	21, 130, 205, 1342
MmeI	TCCRAC	2 cut(s)	506, 1651
Mox20I	TGGCCA	1 cut(s)	660
MroXI	GAANNNNTTC	3 cut(s)	240, 1047, 1290
MscI	TGGCCA	1 cut(s)	660
MseI	TTAA	6 cut(s)	54, 806, 1025, 1173, 1191, 1440
MslI	CAYNNNNRTG	4 cut(s)	506, 777, 1509, 1622
Msp20I	TGGCCA	1 cut(s)	660
MspA1I	CMGCKG	1 cut(s)	692
MspCI	CTTAAG	2 cut(s)	805, 1439
MspI	CCGG	3 cut(s)	9, 1250, 1496
MunI	CAATTG	3 cut(s)	666, 1317, 1446
Mva1269I	GAATGC	1 cut(s)	599
MwoI	GCNNNNNNNGC	2 cut(s)	878, 1421
NheI	GCTAGC	1 cut(s)	1411
NlaIII	CATG	2 cut(s)	776, 848
NlaIV	GGNNCC	2 cut(s)	261, 1146
NmuCI	GTSAC	2 cut(s)	1615, 1709
OliI	CACNNNNGTG	1 cut(s)	1509
PctI	GAATGC	1 cut(s)	599
PdmI	GAANNNNTTC	3 cut(s)	240, 1047, 1290
PfeI	GAWTC	3 cut(s)	1013, 1094, 1301
PflFI	GACNNNGTC	1 cut(s)	1211
PflMI	CCANNNNNTGG	1 cut(s)	1583
PkrI	GCNGC	4 cut(s)	691, 823, 916, 1182
PleI	GAGTC	4 cut(s)	20, 129, 205, 1342
PpsI	GAGTC	4 cut(s)	20, 129, 205, 1342
PpuMI	RGGWCCY	1 cut(s)	1020
PshAI	GACNNNNGTC	1 cut(s)	1338
PsiI	TTATAA	1 cut(s)	1520
Psp5II	RGGWCCY	1 cut(s)	1020
PspN4I	GGNNCC	2 cut(s)	261, 1146
PspPI	GGNCC	1 cut(s)	1020
PspPPI	RGGWCCY	1 cut(s)	1020
PstI	CTGCAG	1 cut(s)	73
PsuI	RGATCY	5 cut(s)	73, 359, 935, 1144, 1168
PsyI	GACNNNGTC	1 cut(s)	1211
PvuII	CAGCTG	1 cut(s)	692
RsaI	GTAC	4 cut(s)	20, 261, 1121, 1248
RsaNI	GTAC	4 cut(s)	19, 260, 1120, 1247
RseI	CAYNNNNRTG	4 cut(s)	506, 777, 1509, 1622
SaqAI	TTAA	6 cut(s)	54, 806, 1025, 1173, 1191, 1440
SatI	GCNGC	4 cut(s)	690, 822, 915, 1181
Sau96I	GGNCC	1 cut(s)	1020
SchI	GAGTC	4 cut(s)	21, 130, 205, 1342
SduI	GDGCHC	2 cut(s)	406, 883
SfaNI	GCATC	5 cut(s)	676, 819, 881, 1013, 1261
SfcI	CTRYAG	3 cut(s)	69, 1224, 1548
SinI	GGWCC	1 cut(s)	1020
SmiMI	CAYNNNNRTG	4 cut(s)	506, 777, 1509, 1622
SmlI	CTYRAG	5 cut(s)	35, 230, 805, 978, 1439
SmoI	CTYRAG	5 cut(s)	35, 230, 805, 978, 1439
SsiI	CCGC	2 cut(s)	1128, 1367
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	5 cut(s)	245, 626, 839, 1083, 1412
StyI	CCWWGG	2 cut(s)	493, 1456
TaaI	ACNGT	4 cut(s)	310, 679, 706, 1058
TaqI	TCGA	1 cut(s)	312
TatI	WGTACW	2 cut(s)	18, 1119
TfiI	GAWTC	3 cut(s)	1013, 1094, 1301
Tru1I	TTAA	6 cut(s)	54, 806, 1025, 1173, 1191, 1440
Tru9I	TTAA	6 cut(s)	54, 806, 1025, 1173, 1191, 1440
TscAI	CASTG	5 cut(s)	177, 727, 1206, 1242, 1714
TseFI	GTSAC	2 cut(s)	1615, 1709
TseI	GCWGC	4 cut(s)	689, 821, 914, 1180
Tsp45I	GTSAC	2 cut(s)	1615, 1709
TspDTI	ATGAA	7 cut(s)	18, 339, 789, 939, 960, 1640, 1668
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	5 cut(s)	177, 727, 1206, 1242, 1714
Tth111I	GACNNNGTC	1 cut(s)	1211
Van91I	CCANNNNNTGG	1 cut(s)	1583
Vha464I	CTTAAG	2 cut(s)	805, 1439
VpaK11BI	GGWCC	1 cut(s)	1020
XagI	CCTNNNNNAGG	1 cut(s)	602
XapI	RAATTY	6 cut(s)	23, 218, 587, 1062, 1451, 1480
XbaI	TCTAGA	1 cut(s)	838
XmnI	GAANNNNTTC	3 cut(s)	240, 1047, 1290
XspI	CTAG	5 cut(s)	245, 626, 839, 1083, 1412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.