Rh1AG302900

of pyruvate dehydrogenase complex

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
53489905 .. 53497455
7551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG302900.1

Sequence Viewer

Length: 1764 bp
ATGAAATGGATCAGGCCTGCATCTTTGTCCATGCTCACCGGAGTCCAGTATAAATTTTCATACCGCAAGCCTTGGACGGGTGTCAAGCATTACTCAACTGCCGATCCTTTGTATGCTGTCCTTGATATGCCTGCTTTGTCTCCTACAATGAGTCAAGGTAACATTGCGAAATGGAGGAAGAAAGAGGGAGATAAGATTGAAGTGGGTGATGTACTATGTGAAATTGAAACTGACAAAGCTACTCTTGAATTTGAAAGTCTTGAAGAAGGGTTTCTAGCCAAGATACTGGTACCTGAAGGTTCAAAGGATGTGCCTGTGGGACAACCTATTGCAGTAACGGTCGAGGATAAAGATGAAATCCAAAACATCCCTGCTAATATTGTGGGTGGATCTGAGGTGAAAGAGGACATACCACAACATCAGAAAGATGAGGCGCAAGATACAAGTTCTGTGGGGATAAACACAGCAGACCTTCCTCCTCACATTGTTGTTGAAATGCCAGCTTTGTCTCCAACAATGAGCCAAGGAAACATTGCTGTGTGGAGAAAGAAAGAAGGAGATAAGATAGAAGTTGGTGATGTGTTGTGTGAGATAGAGACGGACAAAGCCACCCTTGAATTTGAATGCCTTGAAGAGGGATACTTGGCTAAAATACTAGCACCTGAAGGTTCAAAGGATGTGGCTGTTGGCCAACCAATTGCAGTAACAGTTGAGGATGCAGCTGATTTGGAAACTGTAAAGAATGGTGTCAGTGTTGGTTCAAGTGTCAAAAAGGAAAAACCAATTCATCATGATACTAAACATGAAAGTGGAGCAGTAAAAACAACCAGTGTCAAAAGGATCAGTCCAGCAGCTAAGAATCTAATTCTAGAACACGGATTAGATACATCGTCATTGAGGGCATCAGGTGCTCATGGTACGCTACTGAAAGGGGATGTTTTAGCGGCAATCAAGTCAGGAACTGGATCTTCAAAAGTTTCATCTTCTAAAGAGAAGGCACCTTCATCTTCTCAAGCACATATAAAGATAGCTCCAGCATCTCCAGAGTCAAGGTCTTTACAGACAGATTTTGAAGAGTTTCCCAACAGTCAAATTCGCAAGGTGATAGCTAGTAGGTTGCTGGAATCAAAACAAAACATACCACACTTGTATTTATCCTCAGATGTTATCCTGGATCCTCTTCTTTCTCTTAGAAAGGATCTTAAAGAGCAGCATAATGTTAAAGTTTCAGTGAATGACATTGTCATTAGAGCTGTAGCTATTGCACTGAGAAATGTACCGGAAGCAAATGCTTACTGGGATGCTGAAAAGGGAGAAGTAATTCTTTGTGATTCTGTTGATATATCAATTGCTGTCGCTACCGACAAGGGTCTGATGACTCCAATTGTGAAAAATGCGGATCAGAAAACAATATCAGCAATCTCCTCCGAGGTCAAGGAACTAGCTGAGAAGGCACGGGCAGGAAAGCTTAAGCCAAGTGAATTCCAAGGAGGGACTTTCAGCATTTCAAACTTGGGGATGTTTCCGGTGGATCATTTCTGTGCAATTATAAATCCACCTCAGGCCAGTATCCTTGCTGTAGGCAGAGGCAACAAAGTTGTTGAACCAGTAATTGGAAGTGATGGAATTGAAAGGCCAGCAGTAGTCACAAAAATGCACTTGACGTTATCGGCGGATCATCGTGTTTTTGATGGCAAAGTTGGAGGTACATTCCTCTCAGCTTTACAATCAAACTTCAGTGACATCCGAAGACTTCTTTTGTAA

Protein Analysis

587

Amino Acids

63.26

Weight (kDa)

5.72

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Biotin_lipoyl PF00364 41 - 112 1.9e-18 Biotin-requiring enzyme
Biotin_lipoyl PF00364 164 - 235 4.6e-17 Biotin-requiring enzyme
E3_binding PF02817 280 - 314 1.2e-07 e3 binding domain
2-oxoacid_dh PF00198 356 - 586 1.3e-75 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1550
Acc65I GGTACC 1 cut(s) 289
AccB1I GGYRCC 2 cut(s) 289, 997
AccB7I CCANNNNNTGG 1 cut(s) 1613
AciI CCGC 4 cut(s) 64, 944, 1397, 1673
AcoI YGGCCR 1 cut(s) 688
AcsI RAATTY 5 cut(s) 53, 248, 617, 1092, 1481
AcuI CTGAAG 3 cut(s) 315, 684, 1720
AfaI GTAC 5 cut(s) 213, 291, 919, 1278, 1708
AfiI CCNNNNNNNGG 3 cut(s) 77, 634, 1613
AflII CTTAAG 1 cut(s) 1469
AjnI CCWGG 1 cut(s) 1170
AjuI GAANNNNNNNTTGG 2 cut(s) 1596, 1628
Alw21I GWGCWC 1 cut(s) 913
Alw26I GTCTC 3 cut(s) 144, 513, 590
AlwNI CAGNNNCTG 1 cut(s) 962
AoxI GGCC 4 cut(s) 14, 688, 1563, 1634
ApeKI GCWGC 3 cut(s) 719, 851, 1210
ApoI RAATTY 5 cut(s) 53, 248, 617, 1092, 1481
Asp700I GAANNNNTTC 3 cut(s) 270, 1077, 1320
Asp718I GGTACC 1 cut(s) 289
AspLEI GCGC 1 cut(s) 436
AsuHPI GGTGA 5 cut(s) 28, 218, 409, 587, 1114
AxyI CCTNAGG 1 cut(s) 1560
BalI TGGCCA 1 cut(s) 690
BamHI GGATCC 1 cut(s) 1174
BanI GGYRCC 2 cut(s) 289, 997
BbsI GAAGAC 1 cut(s) 1756
Bbv12I GWGCWC 1 cut(s) 913
BbvI GCAGC 3 cut(s) 731, 863, 1222
BccI CCATC 2 cut(s) 1616, 1685
BciT130I CCWGG 1 cut(s) 1172
BciVI GTATCC 2 cut(s) 632, 1580
BcoDI GTCTC 3 cut(s) 144, 513, 590
BfaI CTAG 5 cut(s) 275, 656, 869, 1110, 1442
BfmI CTRYAG 2 cut(s) 1254, 1578
BfrI CTTAAG 1 cut(s) 1469
BfuI GTATCC 2 cut(s) 632, 1580
BisI GCNGC 4 cut(s) 720, 852, 945, 1211
BlsI GCNGC 4 cut(s) 721, 853, 946, 1212
Bme1390I CCNGG 1 cut(s) 1172
BmiI GGNNCC 3 cut(s) 291, 999, 1176
BmrFI CCNGG 1 cut(s) 1172
BmrI ACTGGG 1 cut(s) 1306
BmsI GCATC 5 cut(s) 29, 706, 911, 1046, 1291
BmuI ACTGGG 1 cut(s) 1306
BoxI GACNNNNGTC 2 cut(s) 80, 1368
BpiI GAAGAC 1 cut(s) 1756
BpmI CTGGAG 2 cut(s) 1017, 1026
BpuEI CTTGAG 1 cut(s) 996
BsaJI CCNNGG 4 cut(s) 71, 523, 1428, 1486
BsaWI WCCGGW 3 cut(s) 38, 1279, 1525
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 634, 1613
Bse1I ACTGG 7 cut(s) 46, 291, 828, 967, 1301, 1566, 1607
Bse21I CCTNAGG 1 cut(s) 1560
Bse3DI GCAATG 2 cut(s) 162, 531
BseBI CCWGG 1 cut(s) 1172
BseDI CCNNGG 4 cut(s) 71, 523, 1428, 1486
BseGI GGATG 8 cut(s) 313, 366, 682, 721, 940, 1306, 1524, 1743
BseLI CCNNNNNNNGG 3 cut(s) 77, 634, 1613
BseMI GCAATG 2 cut(s) 162, 531
BseMII CTCAG 6 cut(s) 384, 1173, 1259, 1437, 1574, 1731
BseNI ACTGG 7 cut(s) 46, 291, 828, 967, 1301, 1566, 1607
BseRI GAGGAG 2 cut(s) 468, 1414
BseXI GCAGC 3 cut(s) 731, 863, 1222
Bsh1285I CGRYCG 1 cut(s) 342
BshFI GGCC 4 cut(s) 16, 690, 1565, 1636
BshNI GGYRCC 2 cut(s) 289, 997
BsiEI CGRYCG 1 cut(s) 342
BsiHKAI GWGCWC 1 cut(s) 913
BsiSI CCGG 3 cut(s) 39, 1280, 1526
BslFI GGGAC 2 cut(s) 333, 1507
BslI CCNNNNNNNGG 3 cut(s) 77, 634, 1613
BsmAI GTCTC 3 cut(s) 144, 513, 590
BsmBI CGTCTC 1 cut(s) 590
BsmFI GGGAC 2 cut(s) 333, 1507
BsmI GAATGC 1 cut(s) 629
BsnI GGCC 4 cut(s) 16, 690, 1565, 1636
Bsp1286I GDGCHC 1 cut(s) 913
BspACI CCGC 4 cut(s) 64, 944, 1397, 1673
BspANI GGCC 4 cut(s) 16, 690, 1565, 1636
BspCNI CTCAG 6 cut(s) 385, 1172, 1260, 1438, 1573, 1730
BspHI TCATGA 1 cut(s) 790
BspLI GGNNCC 3 cut(s) 291, 999, 1176
BspT107I GGYRCC 2 cut(s) 289, 997
BspTI CTTAAG 1 cut(s) 1469
BsrDI GCAATG 2 cut(s) 162, 531
BsrI ACTGG 7 cut(s) 46, 291, 828, 967, 1301, 1566, 1607
BssECI CCNNGG 4 cut(s) 71, 523, 1428, 1486
BssT1I CCWWGG 3 cut(s) 71, 523, 1486
Bst2UI CCWGG 1 cut(s) 1172
Bst4CI ACNGT 4 cut(s) 340, 709, 736, 1088
Bst6I CTCTTC 3 cut(s) 627, 1068, 1185
BstAFI CTTAAG 1 cut(s) 1469
BstAPI GCANNNNNTGC 1 cut(s) 908
BstC8I GCNNGC 5 cut(s) 18, 68, 132, 501, 1638
BstDEI CTNAG 8 cut(s) 393, 855, 1159, 1190, 1268, 1446, 1560, 1717
BstENI CCTNNNNNAGG 1 cut(s) 632
BstF5I GGATG 8 cut(s) 313, 366, 682, 721, 940, 1306, 1524, 1743
BstHHI GCGC 1 cut(s) 436
BstMAI GTCTC 3 cut(s) 144, 513, 590
BstMCI CGRYCG 1 cut(s) 342
BstMWI GCNNNNNNNGC 2 cut(s) 908, 1451
BstNI CCWGG 1 cut(s) 1172
BstPAI GACNNNNGTC 2 cut(s) 80, 1368
BstSCI CCNGG 1 cut(s) 1170
BstSFI CTRYAG 2 cut(s) 1254, 1578
BstV1I GCAGC 3 cut(s) 731, 863, 1222
BstV2I GAAGAC 1 cut(s) 1756
BstX2I RGATCY 4 cut(s) 389, 965, 1174, 1198
BstXI CCANNNNNNTGG 1 cut(s) 286
BstYI RGATCY 4 cut(s) 389, 965, 1174, 1198
Bsu36I CCTNAGG 1 cut(s) 1560
BsuI GTATCC 2 cut(s) 632, 1580
BsuRI GGCC 4 cut(s) 16, 690, 1565, 1636
BtsCI GGATG 8 cut(s) 313, 366, 682, 721, 940, 1306, 1524, 1743
BtsIMutI CAGTG 5 cut(s) 757, 835, 1236, 1265, 1744
Cac8I GCNNGC 5 cut(s) 18, 68, 132, 501, 1638
CaiI CAGNNNCTG 1 cut(s) 962
CciI TCATGA 1 cut(s) 790
CfoI GCGC 1 cut(s) 436
Csp6I GTAC 5 cut(s) 212, 290, 918, 1277, 1707
CspCI CAANNNNNGTGG 4 cut(s) 432, 467, 660, 695
CviAII CATG 4 cut(s) 31, 791, 803, 914
CviQI GTAC 5 cut(s) 212, 290, 918, 1277, 1707
DdeI CTNAG 8 cut(s) 393, 855, 1159, 1190, 1268, 1446, 1560, 1717
EaeI YGGCCR 1 cut(s) 688
Eam1104I CTCTTC 3 cut(s) 627, 1068, 1185
EarI CTCTTC 3 cut(s) 627, 1068, 1185
EciI GGCGGA 1 cut(s) 1688
Eco130I CCWWGG 3 cut(s) 71, 523, 1486
Eco147I AGGCCT 1 cut(s) 16
Eco57I CTGAAG 3 cut(s) 315, 684, 1720
Eco81I CCTNAGG 1 cut(s) 1560
EcoNI CCTNNNNNAGG 1 cut(s) 632
EcoRI GAATTC 1 cut(s) 1481
EcoRII CCWGG 1 cut(s) 1170
EcoT14I CCWWGG 3 cut(s) 71, 523, 1486
ErhI CCWWGG 3 cut(s) 71, 523, 1486
Esp3I CGTCTC 1 cut(s) 590
FaeI CATG 4 cut(s) 34, 794, 806, 917
FalI AAGNNNNNCTT 6 cut(s) 228, 260, 597, 629, 1308, 1340
FaqI GGGAC 2 cut(s) 333, 1507
FatI CATG 4 cut(s) 30, 790, 802, 913
Fnu4HI GCNGC 4 cut(s) 720, 852, 945, 1211
FokI GGATG 8 cut(s) 320, 353, 689, 728, 947, 1313, 1531, 1730
Fsp4HI GCNGC 4 cut(s) 720, 852, 945, 1211
FspBI CTAG 5 cut(s) 275, 656, 869, 1110, 1442
GlaI GCGC 1 cut(s) 435
GluI GCNGC 4 cut(s) 720, 852, 945, 1211
GsuI CTGGAG 2 cut(s) 1017, 1026
HaeIII GGCC 4 cut(s) 16, 690, 1565, 1636
HapII CCGG 3 cut(s) 39, 1280, 1526
HhaI GCGC 1 cut(s) 436
Hin1II CATG 4 cut(s) 34, 794, 806, 917
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HindIII AAGCTT 1 cut(s) 1466
HinfI GANTC 7 cut(s) 42, 151, 859, 1046, 1124, 1331, 1378
HpaII CCGG 3 cut(s) 39, 1280, 1526
HphI GGTGA 5 cut(s) 28, 218, 409, 587, 1114
Hpy188I TCNGA 7 cut(s) 394, 423, 1162, 1374, 1404, 1429, 1748
Hpy188III TCNNGA 6 cut(s) 245, 260, 791, 869, 957, 1043
HpyAV CCTTC 8 cut(s) 260, 290, 482, 548, 659, 988, 1011, 1444
HpyCH4III ACNGT 4 cut(s) 340, 709, 736, 1088
HpyCH4IV ACGT 1 cut(s) 1664
HpyCH4V TGCA 7 cut(s) 20, 332, 701, 719, 1265, 1544, 1657
HpyF10VI GCNNNNNNNGC 2 cut(s) 908, 1451
HpyF3I CTNAG 8 cut(s) 393, 855, 1159, 1190, 1268, 1446, 1560, 1717
HpySE526I ACGT 1 cut(s) 1664
Hsp92II CATG 4 cut(s) 34, 794, 806, 917
HspAI GCGC 1 cut(s) 434
KpnI GGTACC 1 cut(s) 293
LmnI GCTCC 2 cut(s) 812, 1036
Lsp1109I GCAGC 3 cut(s) 731, 863, 1222
LweI GCATC 5 cut(s) 29, 706, 911, 1046, 1291
MaeI CTAG 5 cut(s) 275, 656, 869, 1110, 1442
MaeII ACGT 1 cut(s) 1664
MaeIII GTNAC 5 cut(s) 158, 334, 703, 1645, 1739
MboII GAAGA 9 cut(s) 190, 275, 644, 960, 975, 999, 1085, 1172, 1761
MfeI CAATTG 3 cut(s) 696, 1347, 1383
MflI RGATCY 4 cut(s) 389, 965, 1174, 1198
MhlI GDGCHC 1 cut(s) 913
MlsI TGGCCA 1 cut(s) 690
MluNI TGGCCA 1 cut(s) 690
MlyI GAGTC 4 cut(s) 51, 160, 1055, 1372
MmeI TCCRAC 2 cut(s) 536, 1681
Mox20I TGGCCA 1 cut(s) 690
MroXI GAANNNNTTC 3 cut(s) 270, 1077, 1320
MscI TGGCCA 1 cut(s) 690
MseI TTAA 3 cut(s) 1203, 1221, 1470
MslI CAYNNNNRTG 4 cut(s) 536, 807, 1539, 1652
Msp20I TGGCCA 1 cut(s) 690
MspA1I CMGCKG 1 cut(s) 722
MspCI CTTAAG 1 cut(s) 1469
MspI CCGG 3 cut(s) 39, 1280, 1526
MspR9I CCNGG 1 cut(s) 1172
MunI CAATTG 3 cut(s) 696, 1347, 1383
Mva1269I GAATGC 1 cut(s) 629
MvaI CCWGG 1 cut(s) 1172
MwoI GCNNNNNNNGC 2 cut(s) 908, 1451
NlaIII CATG 4 cut(s) 34, 794, 806, 917
NlaIV GGNNCC 3 cut(s) 291, 999, 1176
NmuCI GTSAC 2 cut(s) 1645, 1739
PagI TCATGA 1 cut(s) 790
PceI AGGCCT 1 cut(s) 16
PctI GAATGC 1 cut(s) 629
PdmI GAANNNNTTC 3 cut(s) 270, 1077, 1320
PfeI GAWTC 3 cut(s) 859, 1124, 1331
PflFI GACNNNGTC 1 cut(s) 1241
PflMI CCANNNNNTGG 1 cut(s) 1613
PfoI TCCNGGA 1 cut(s) 1170
PkrI GCNGC 4 cut(s) 721, 853, 946, 1212
PleI GAGTC 4 cut(s) 50, 159, 1054, 1372
PpsI GAGTC 4 cut(s) 50, 159, 1054, 1372
PshAI GACNNNNGTC 2 cut(s) 80, 1368
PsiI TTATAA 1 cut(s) 1550
Psp6I CCWGG 1 cut(s) 1170
PspGI CCWGG 1 cut(s) 1170
PspN4I GGNNCC 3 cut(s) 291, 999, 1176
PstNI CAGNNNCTG 1 cut(s) 962
PsuI RGATCY 4 cut(s) 389, 965, 1174, 1198
PsyI GACNNNGTC 1 cut(s) 1241
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 5 cut(s) 213, 291, 919, 1278, 1708
RsaNI GTAC 5 cut(s) 212, 290, 918, 1277, 1707
RseI CAYNNNNRTG 4 cut(s) 536, 807, 1539, 1652
SaqAI TTAA 3 cut(s) 1203, 1221, 1470
SatI GCNGC 4 cut(s) 720, 852, 945, 1211
SchI GAGTC 4 cut(s) 51, 160, 1055, 1372
ScrFI CCNGG 1 cut(s) 1172
SduI GDGCHC 1 cut(s) 913
SfaNI GCATC 5 cut(s) 29, 706, 911, 1046, 1291
SfcI CTRYAG 2 cut(s) 1254, 1578
SmiMI CAYNNNNRTG 4 cut(s) 536, 807, 1539, 1652
SmlI CTYRAG 2 cut(s) 1011, 1469
SmoI CTYRAG 2 cut(s) 1011, 1469
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 4 cut(s) 64, 944, 1397, 1673
SspI AATATT 1 cut(s) 379
SspMI CTAG 5 cut(s) 275, 656, 869, 1110, 1442
StuI AGGCCT 1 cut(s) 16
StyD4I CCNGG 1 cut(s) 1170
StyI CCWWGG 3 cut(s) 71, 523, 1486
TaaI ACNGT 4 cut(s) 340, 709, 736, 1088
TaiI ACGT 1 cut(s) 1667
TaqI TCGA 1 cut(s) 342
TatI WGTACW 1 cut(s) 211
TauI GCSGC 1 cut(s) 947
TfiI GAWTC 3 cut(s) 859, 1124, 1331
Tru1I TTAA 3 cut(s) 1203, 1221, 1470
Tru9I TTAA 3 cut(s) 1203, 1221, 1470
TscAI CASTG 5 cut(s) 757, 835, 1236, 1272, 1744
TseFI GTSAC 2 cut(s) 1645, 1739
TseI GCWGC 3 cut(s) 719, 851, 1210
Tsp45I GTSAC 2 cut(s) 1645, 1739
TspDTI ATGAA 7 cut(s) 17, 48, 369, 776, 819, 969, 993
TspGWI ACGGA 2 cut(s) 614, 891
TspRI CASTG 5 cut(s) 757, 835, 1236, 1272, 1744
Tth111I GACNNNGTC 1 cut(s) 1241
Van91I CCANNNNNTGG 1 cut(s) 1613
Vha464I CTTAAG 1 cut(s) 1469
XagI CCTNNNNNAGG 1 cut(s) 632
XapI RAATTY 5 cut(s) 53, 248, 617, 1092, 1481
XbaI TCTAGA 1 cut(s) 868
XmnI GAANNNNTTC 3 cut(s) 270, 1077, 1320
XspI CTAG 5 cut(s) 275, 656, 869, 1110, 1442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.