FvH4_7g18990

Arsenical pump-driving

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0010871
Physical Location & Seq
Reverse (-)
15782985 .. 15787015
4031 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18990.t1

Sequence Viewer

Length: 1239 bp
ATGGCGACTAGTACGTGTATTCCCTCCACCTTCACACCCATTCTTCAGAACTTGACTTCCAGAAACTCCATTGCTATGGTGGGTTTGCTCTCTTATGCACCCAAAACCTTGAGGCCTCTCTCTTATGCCCAGAGCCTCGGTTTCAGTTCACTTTCCACCGCCAGAAAGCATCCCAGGAAATTGCTTCAATTCCAAGTGAGATCAGTGGCCACTCCTGCGGAAGCTGTTGCTGGGTTTGAAGAGATGGTTGCTGGGACACAGCGAAAGTATTACATGTTAGGTGGTAAAGGTGGAGTTGGAAAGACCAGTTGTGCAGCTTCACTTGCTGTGAAGTTTGCTAACAATGGGCATCCCACTCTTGTGGTTTCCACTGATCCAGCACATTCCTTGAGTGATTCCTTTGCTCAGGATTTAACTGGAGGGACGCTTGTACCAGTTGATGGGCCTGATGCTCCACTTTTTGCTCTGGAGATTAACCCTGAGAAGGCAAGGGAAGAATTCAAAACTGCAAGCCAGAAAAATGGTGGAACAGGGGTTAAAGATTTTATGGATGGAATGGGCCTTGGGATGCTTGCTGAACAGTTGGGAGAGCTAAAACTGGGAGAACTGCTAGACACACCTCCTCCTGGTTTGGATGAAGCTATTGCGATTTCCAAGGTGATACAATTTCTCGAATCACCAGAATATAACATGTTTACTCGTATCGTTTTTGATACTGCACCCACGGGCCATACATTGCGACTTTTGTCCTTGCCAGACTTCTTGGATGCATCAATTGGCAAGATCCTGAAGCTTAGACAAAAGATAGCTTCAGCGACCTCAGCCATCAAATCCGTTTTTGGATCAGGGGAAAGTGATTCTGGAGCATCAGACAAATTAGAGAAACTACGGGAGAGAATGATTAAAGTGCGCGAGCTTTTCCGTGATACCGAATCCACAGAATTTGTCATAGTAACAATACCCACGGTCATGGCAGTCAGTGAGTCATCTAGGTTGCATGCCTCTTTGAAGAAGGAATCAGTTCCTGTAAAGCGGCTTATTGTTAATCAGATTCTTCCCCCATCTGCCTCAGACTGCAAATTTTGTTCAATTAAAAGAAAGGACCAGATGCGTGCTCTTGATATGATCCGGAGTGATCCAGAGCTCCTTGGCCTGACATTGATCCAGGCTCCACTAGTTGACATGGAGATCAGAGGAGTGCCTGCCCTTCGATTTCTGGGAGACATGATTTGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArsA_ATPase

Protein Analysis

413

Amino Acids

44.58

Weight (kDa)

8.73

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArsA_ATPase PF02374 89 - 410 1.8e-72 Anion-transporting ATPase
CbiA PF01656 93 - 292 5.1e-08 CobQ/CobB/MinD/ParA nucleotide binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010871)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10350
fragaria_vesca FvH4_7g18990 FvH4_7g18990
malus_domestica MD01G1105500.v1.1 MD07G1171700.v1.1
prunus_persica Prupe.2G211000_v2.0.a1 Prupe.2G211000_v2.0.a1 Prupe.2G211000_v2.0.a1
pyrus_communis pycom01g13230 pycom07g16630
rosa_chinensis RchiOBHm_Chr1g0362921
rosa_laevigata RLG00000027612
rosa_multiflora Rmu_sc0001502.1_g000006
rosa_roxburghii Rroxscaffold_4G00293650
rosa_rugosa Rorug01G0302100
rosa_samantha Rh1AG311600 Rh1BG274700 Rh1CG291900 Rh1DG305400
rosa_wichuraiana Rw1G027610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 440
AccII CGCG 1 cut(s) 912
AccIII TCCGGA 1 cut(s) 1128
AciI CCGC 3 cut(s) 159, 218, 1033
AclWI GGATC 6 cut(s) 368, 778, 850, 1120, 1130, 1156
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 3 cut(s) 497, 941, 1079
AcuI CTGAAG 3 cut(s) 29, 795, 809
AfaI GTAC 2 cut(s) 13, 432
AfiI CCNNNNNNNGG 3 cut(s) 440, 484, 626
AflIII ACRYGT 3 cut(s) 14, 273, 690
AgsI TTSAA 5 cut(s) 188, 239, 502, 1009, 1089
AhlI ACTAGT 2 cut(s) 8, 1174
AjnI CCWGG 3 cut(s) 173, 625, 1164
AleI CACNNNNGTG 1 cut(s) 359
AloI GAACNNNNNNTCC 2 cut(s) 41, 73
AluBI AGCT 8 cut(s) 224, 317, 592, 641, 793, 809, 916, 1144
AluI AGCT 8 cut(s) 224, 317, 592, 641, 793, 809, 916, 1144
Alw21I GWGCWC 2 cut(s) 1117, 1146
Alw26I GTCTC 1 cut(s) 1215
AlwI GGATC 6 cut(s) 368, 778, 850, 1120, 1130, 1156
AlwNI CAGNNNCTG 1 cut(s) 1025
Aor13HI TCCGGA 1 cut(s) 1128
AoxI GGCC 6 cut(s) 113, 207, 443, 559, 727, 1150
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 3 cut(s) 497, 941, 1079
Asp700I GAANNNNTTC 1 cut(s) 1020
AspLEI GCGC 1 cut(s) 912
AspS9I GGNCC 4 cut(s) 443, 559, 727, 1102
AsuHPI GGTGA 2 cut(s) 669, 670
AvaII GGWCC 1 cut(s) 1102
BaeI ACNNNNGTAYC 2 cut(s) 414, 447
BalI TGGCCA 1 cut(s) 209
BanII GRGCYC 1 cut(s) 1146
Bbv12I GWGCWC 2 cut(s) 1117, 1146
BbvCI CCTCAGC 1 cut(s) 820
BbvI GCAGC 1 cut(s) 326
BccI CCATC 5 cut(s) 238, 434, 545, 833, 1069
BciT130I CCWGG 3 cut(s) 175, 627, 1166
BcoDI GTCTC 1 cut(s) 1215
BcuI ACTAGT 2 cut(s) 8, 1174
BfaI CTAG 4 cut(s) 9, 611, 990, 1175
BisI GCNGC 2 cut(s) 315, 1034
BlsI GCNGC 2 cut(s) 316, 1035
Bme1390I CCNGG 3 cut(s) 175, 627, 1166
Bme18I GGWCC 1 cut(s) 1102
BmgT120I GGNCC 4 cut(s) 443, 559, 727, 1102
BmiI GGNNCC 1 cut(s) 1170
BmrFI CCNGG 3 cut(s) 175, 627, 1166
BmrI ACTGGG 1 cut(s) 608
BmsI GCATC 8 cut(s) 178, 358, 439, 558, 757, 779, 875, 1098
BmuI ACTGGG 1 cut(s) 608
BoxI GACNNNNGTC 1 cut(s) 745
BpmI CTGGAG 3 cut(s) 438, 488, 882
Bpu10I CCTNAGC 2 cut(s) 405, 820
BpuEI CTTGAG 2 cut(s) 130, 409
BsaAI YACGTR 1 cut(s) 15
BsaJI CCNNGG 7 cut(s) 136, 173, 562, 654, 723, 963, 1147
BsaWI WCCGGW 1 cut(s) 1128
BsaXI ACNNNNNCTCC 2 cut(s) 607, 637
Bsc4I CCNNNNNNNGG 3 cut(s) 440, 484, 626
Bse1I ACTGG 4 cut(s) 306, 421, 434, 603
Bse3DI GCAATG 2 cut(s) 69, 734
BseAI TCCGGA 1 cut(s) 1128
BseBI CCWGG 3 cut(s) 175, 627, 1166
BseDI CCNNGG 7 cut(s) 136, 173, 562, 654, 723, 963, 1147
BseGI GGATG 6 cut(s) 169, 349, 556, 573, 640, 772
BseLI CCNNNNNNNGG 3 cut(s) 440, 484, 626
BseMI GCAATG 2 cut(s) 69, 734
BseMII CTCAG 4 cut(s) 419, 471, 834, 1083
BseNI ACTGG 4 cut(s) 306, 421, 434, 603
BseRI GAGGAG 2 cut(s) 612, 1209
BseXI GCAGC 1 cut(s) 326
BseYI CCCAGC 2 cut(s) 230, 251
BsgI GTGCAG 2 cut(s) 333, 702
Bsh1236I CGCG 1 cut(s) 912
BshFI GGCC 6 cut(s) 115, 209, 445, 561, 729, 1152
BsiHKAI GWGCWC 2 cut(s) 1117, 1146
BsiSI CCGG 1 cut(s) 1129
BslFI GGGAC 2 cut(s) 268, 436
BslI CCNNNNNNNGG 3 cut(s) 440, 484, 626
BsmAI GTCTC 1 cut(s) 1215
BsmFI GGGAC 2 cut(s) 268, 436
BsnI GGCC 6 cut(s) 115, 209, 445, 561, 729, 1152
Bsp1286I GDGCHC 2 cut(s) 1117, 1146
Bsp13I TCCGGA 1 cut(s) 1128
Bsp143I GATC 8 cut(s) 200, 373, 783, 842, 1125, 1135, 1161, 1188
BspACI CCGC 3 cut(s) 159, 218, 1033
BspANI GGCC 6 cut(s) 115, 209, 445, 561, 729, 1152
BspCNI CTCAG 4 cut(s) 418, 472, 833, 1082
BspEI TCCGGA 1 cut(s) 1128
BspFNI CGCG 1 cut(s) 912
BspLI GGNNCC 1 cut(s) 1170
BspPI GGATC 6 cut(s) 368, 778, 850, 1120, 1130, 1156
BsrDI GCAATG 2 cut(s) 69, 734
BsrI ACTGG 4 cut(s) 306, 421, 434, 603
BssECI CCNNGG 7 cut(s) 136, 173, 562, 654, 723, 963, 1147
BssMI GATC 8 cut(s) 200, 373, 783, 842, 1125, 1135, 1161, 1188
BssT1I CCWWGG 3 cut(s) 562, 654, 1147
Bst2UI CCWGG 3 cut(s) 175, 627, 1166
Bst4CI ACNGT 2 cut(s) 582, 967
Bst6I CTCTTC 1 cut(s) 234
BstBAI YACGTR 1 cut(s) 15
BstC8I GCNNGC 6 cut(s) 511, 573, 914, 999, 1113, 1203
BstDEI CTNAG 5 cut(s) 405, 480, 794, 820, 1069
BstDSI CCRYGG 2 cut(s) 723, 963
BstF5I GGATG 6 cut(s) 169, 349, 556, 573, 640, 772
BstFNI CGCG 1 cut(s) 912
BstHHI GCGC 1 cut(s) 912
BstKTI GATC 8 cut(s) 203, 376, 786, 845, 1128, 1138, 1164, 1191
BstMAI GTCTC 1 cut(s) 1215
BstMBI GATC 8 cut(s) 200, 373, 783, 842, 1125, 1135, 1161, 1188
BstMWI GCNNNNNNNGC 3 cut(s) 215, 323, 821
BstNI CCWGG 3 cut(s) 175, 627, 1166
BstNSI RCATGY 3 cut(s) 277, 694, 1001
BstPAI GACNNNNGTC 1 cut(s) 745
BstSCI CCNGG 3 cut(s) 173, 625, 1164
BstUI CGCG 1 cut(s) 912
BstV1I GCAGC 1 cut(s) 326
BstX2I RGATCY 1 cut(s) 783
BstXI CCANNNNNNTGG 4 cut(s) 76, 361, 521, 970
BstYI RGATCY 1 cut(s) 783
BsuRI GGCC 6 cut(s) 115, 209, 445, 561, 729, 1152
BtgI CCRYGG 2 cut(s) 723, 963
BtsCI GGATG 6 cut(s) 169, 349, 556, 573, 640, 772
BtsIMutI CAGTG 3 cut(s) 210, 369, 985
Cac8I GCNNGC 6 cut(s) 511, 573, 914, 999, 1113, 1203
CaiI CAGNNNCTG 1 cut(s) 1025
CfoI GCGC 1 cut(s) 912
Cfr13I GGNCC 4 cut(s) 443, 559, 727, 1102
CseI GACGC 1 cut(s) 433
Csp6I GTAC 2 cut(s) 12, 431
CspCI CAANNNNNGTGG 2 cut(s) 925, 960
CviAII CATG 6 cut(s) 274, 691, 970, 998, 1183, 1225
CviQI GTAC 2 cut(s) 12, 431
DdeI CTNAG 5 cut(s) 405, 480, 794, 820, 1069
DpnI GATC 8 cut(s) 202, 375, 785, 844, 1127, 1137, 1163, 1190
DpnII GATC 8 cut(s) 200, 373, 783, 842, 1125, 1135, 1161, 1188
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 1144
Eco130I CCWWGG 3 cut(s) 562, 654, 1147
Eco147I AGGCCT 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 1146
Eco47I GGWCC 1 cut(s) 1102
Eco53kI GAGCTC 1 cut(s) 1144
Eco57I CTGAAG 3 cut(s) 29, 795, 809
EcoICRI GAGCTC 1 cut(s) 1144
EcoRI GAATTC 1 cut(s) 497
EcoRII CCWGG 3 cut(s) 173, 625, 1164
EcoT14I CCWWGG 3 cut(s) 562, 654, 1147
EcoT22I ATGCAT 1 cut(s) 772
EcoT38I GRGCYC 1 cut(s) 1146
ErhI CCWWGG 3 cut(s) 562, 654, 1147
FaeI CATG 6 cut(s) 277, 694, 973, 1001, 1186, 1228
FaqI GGGAC 2 cut(s) 268, 436
FatI CATG 6 cut(s) 273, 690, 969, 997, 1182, 1224
Fnu4HI GCNGC 2 cut(s) 315, 1034
FokI GGATG 6 cut(s) 156, 336, 563, 580, 647, 779
FriOI GRGCYC 1 cut(s) 1146
Fsp4HI GCNGC 2 cut(s) 315, 1034
FspBI CTAG 4 cut(s) 9, 611, 990, 1175
GlaI GCGC 1 cut(s) 911
GluI GCNGC 2 cut(s) 315, 1034
GsaI CCCAGC 2 cut(s) 234, 255
GsuI CTGGAG 3 cut(s) 438, 488, 882
HaeIII GGCC 6 cut(s) 115, 209, 445, 561, 729, 1152
HapII CCGG 1 cut(s) 1129
HgaI GACGC 1 cut(s) 433
HhaI GCGC 1 cut(s) 912
Hin1II CATG 6 cut(s) 277, 694, 973, 1001, 1186, 1228
Hin6I GCGC 1 cut(s) 910
HinP1I GCGC 1 cut(s) 910
HincII GTYRAC 1 cut(s) 1180
HindII GTYRAC 1 cut(s) 1180
HindIII AAGCTT 1 cut(s) 791
HinfI GANTC 7 cut(s) 395, 674, 857, 932, 983, 1016, 1051
HpaII CCGG 1 cut(s) 1129
HphI GGTGA 2 cut(s) 669, 670
Hpy166II GTNNAC 3 cut(s) 149, 696, 1180
Hpy188I TCNGA 5 cut(s) 48, 871, 1050, 1072, 1193
Hpy188III TCNNGA 9 cut(s) 60, 407, 467, 671, 787, 861, 1118, 1129, 1139
Hpy8I GTNNAC 3 cut(s) 149, 696, 1180
HpyAV CCTTC 4 cut(s) 40, 478, 1006, 1217
HpyCH4III ACNGT 2 cut(s) 582, 967
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 7 cut(s) 98, 314, 509, 719, 770, 997, 1077
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 323, 821
HpyF3I CTNAG 5 cut(s) 405, 480, 794, 820, 1069
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 6 cut(s) 277, 694, 973, 1001, 1186, 1228
HspAI GCGC 1 cut(s) 910
Kpn2I TCCGGA 1 cut(s) 1128
Kzo9I GATC 8 cut(s) 200, 373, 783, 842, 1125, 1135, 1161, 1188
LmnI GCTCC 4 cut(s) 457, 863, 1149, 1174
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 8 cut(s) 178, 358, 439, 558, 757, 779, 875, 1098
MaeI CTAG 4 cut(s) 9, 611, 990, 1175
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 952
MalI GATC 8 cut(s) 202, 375, 785, 844, 1127, 1137, 1163, 1190
MboI GATC 8 cut(s) 200, 373, 783, 842, 1125, 1135, 1161, 1188
MboII GAAGA 5 cut(s) 35, 251, 506, 1021, 1046
MfeI CAATTG 1 cut(s) 774
MflI RGATCY 1 cut(s) 783
MhlI GDGCHC 2 cut(s) 1117, 1146
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 9 cut(s) 179, 188, 497, 665, 774, 875, 941, 1079, 1089
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 1 cut(s) 992
MmeI TCCRAC 1 cut(s) 277
Mox20I TGGCCA 1 cut(s) 209
Mph1103I ATGCAT 1 cut(s) 772
MroI TCCGGA 1 cut(s) 1128
MroXI GAANNNNTTC 1 cut(s) 1020
MscI TGGCCA 1 cut(s) 209
MseI TTAA 6 cut(s) 413, 474, 537, 903, 1044, 1092
MslI CAYNNNNRTG 3 cut(s) 74, 359, 968
Msp20I TGGCCA 1 cut(s) 209
MspI CCGG 1 cut(s) 1129
MspR9I CCNGG 3 cut(s) 175, 627, 1166
MunI CAATTG 1 cut(s) 774
MvaI CCWGG 3 cut(s) 175, 627, 1166
MvnI CGCG 1 cut(s) 912
MwoI GCNNNNNNNGC 3 cut(s) 215, 323, 821
NdeII GATC 8 cut(s) 200, 373, 783, 842, 1125, 1135, 1161, 1188
NlaIII CATG 6 cut(s) 277, 694, 973, 1001, 1186, 1228
NlaIV GGNNCC 1 cut(s) 1170
NsiI ATGCAT 1 cut(s) 772
NspI RCATGY 3 cut(s) 277, 694, 1001
OliI CACNNNNGTG 1 cut(s) 359
PaeI GCATGC 1 cut(s) 1001
PceI AGGCCT 1 cut(s) 115
PciI ACATGT 2 cut(s) 273, 690
PdmI GAANNNNTTC 1 cut(s) 1020
PfeI GAWTC 6 cut(s) 395, 674, 857, 932, 1016, 1051
PflMI CCANNNNNTGG 1 cut(s) 440
PkrI GCNGC 2 cut(s) 316, 1035
PleI GAGTC 1 cut(s) 991
PpsI GAGTC 1 cut(s) 991
Ppu21I YACGTR 1 cut(s) 15
PscI ACATGT 2 cut(s) 273, 690
PshAI GACNNNNGTC 1 cut(s) 745
Psp124BI GAGCTC 1 cut(s) 1146
Psp6I CCWGG 3 cut(s) 173, 625, 1164
PspFI CCCAGC 2 cut(s) 230, 251
PspGI CCWGG 3 cut(s) 173, 625, 1164
PspN4I GGNNCC 1 cut(s) 1170
PspPI GGNCC 4 cut(s) 443, 559, 727, 1102
PstNI CAGNNNCTG 1 cut(s) 1025
PsuI RGATCY 1 cut(s) 783
RsaI GTAC 2 cut(s) 13, 432
RsaNI GTAC 2 cut(s) 12, 431
RseI CAYNNNNRTG 3 cut(s) 74, 359, 968
SacI GAGCTC 1 cut(s) 1146
SaqAI TTAA 6 cut(s) 413, 474, 537, 903, 1044, 1092
SatI GCNGC 2 cut(s) 315, 1034
Sau3AI GATC 8 cut(s) 200, 373, 783, 842, 1125, 1135, 1161, 1188
Sau96I GGNCC 4 cut(s) 443, 559, 727, 1102
SchI GAGTC 1 cut(s) 992
ScrFI CCNGG 3 cut(s) 175, 627, 1166
SduI GDGCHC 2 cut(s) 1117, 1146
SfaNI GCATC 8 cut(s) 178, 358, 439, 558, 757, 779, 875, 1098
SinI GGWCC 1 cut(s) 1102
SmiMI CAYNNNNRTG 3 cut(s) 74, 359, 968
SmlI CTYRAG 2 cut(s) 109, 388
SmoI CTYRAG 2 cut(s) 109, 388
SpeI ACTAGT 2 cut(s) 8, 1174
SphI GCATGC 1 cut(s) 1001
Sse9I AATT 9 cut(s) 179, 188, 497, 665, 774, 875, 941, 1079, 1089
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 3 cut(s) 159, 218, 1033
SspMI CTAG 4 cut(s) 9, 611, 990, 1175
SstI GAGCTC 1 cut(s) 1146
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 3 cut(s) 173, 625, 1164
StyI CCWWGG 3 cut(s) 562, 654, 1147
TaaI ACNGT 2 cut(s) 582, 967
TaiI ACGT 1 cut(s) 17
TaqI TCGA 2 cut(s) 672, 1210
TasI AATT 9 cut(s) 179, 188, 497, 665, 774, 875, 941, 1079, 1089
TauI GCSGC 1 cut(s) 1036
TfiI GAWTC 6 cut(s) 395, 674, 857, 932, 1016, 1051
Tru1I TTAA 6 cut(s) 413, 474, 537, 903, 1044, 1092
Tru9I TTAA 6 cut(s) 413, 474, 537, 903, 1044, 1092
TscAI CASTG 3 cut(s) 210, 376, 985
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 651
TspGWI ACGGA 2 cut(s) 823, 911
TspRI CASTG 3 cut(s) 210, 376, 985
Van91I CCANNNNNTGG 1 cut(s) 440
VpaK11BI GGWCC 1 cut(s) 1102
XapI RAATTY 3 cut(s) 497, 941, 1079
XceI RCATGY 3 cut(s) 277, 694, 1001
XcmI CCANNNNNNNNNTGG 2 cut(s) 76, 521
XmnI GAANNNNTTC 1 cut(s) 1020
XspI CTAG 4 cut(s) 9, 611, 990, 1175
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.