Rh1DG305400

Arsenical pump-driving

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0010871
Physical Location & Seq
Reverse (-)
53269884 .. 53273906
4023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG305400.1

Sequence Viewer

Length: 1134 bp
ATGTTACCAGAAAACAATCAAATGGCGACTAGTACGTGTATTCCCTCCACCTTCACACCCATTCTTCAAAACTTGACTTCCAGAAACTCCATTGCTATGGTGGGTTTGCTCTCTTATGCTCCCAAAACCTTGAAGCCTCTCTCTTATGCCCAGAGCTTCGGTTTCAGTTCACTTTCCACCGCCAGAAAACCGCCCAGAAAATTGCTTCAATTCCAAGTGAGATCAGTGGCCACTCCTGCGGAAGCTGTTGCCGGGTTTGAAGAGATGGTTGCTGGGACTCAGCGAAAGTATTACATGCTAGGTGGTAAAGGTGGAGTTGGAAAGACGAGCTGTGCTGCTTCACTTGCTGTAAAGTTTGCTAACAATGGGCATCCCACTCTTGTGGTTTCCACTGATCCAGCACATTCCTTGAGTGATTCCTTTGCTCAGGATTTGACTGGAGGCACGCTTGTACCAGTTGATGGGCCTGATGCTCCACTTTTTGCTCTGGAGATAAACCCCGAGAAGGCAAGGGAAGAATTCAAAACTGCAAGTAAGAAAAATGGTGGAACAGGGGTCAAAGATTTTATGGATGGAATGGGCCTTGGGATGCTTGCTGAACAGTTGGGAGAGTTAAAACTGGGAGAACTGCTAGACACACCTCCTCCTGGTTTGGATGAAGCTATTGCGATTTCTAAGGTGATACAATTTCTCGAATCACCAGAATATAACATGTTTACTCGTATCGTCTTTGATACTGCACCCACGGGCCATACATTGCGACTTTTATCCTTGCCAGACTTCTTGGATGCATCAATTGGCAAGATATTGAAGCTTAGACAAAAGATATCTTCTGCCACCTCAGCCATCAAATCCGTTTTTGGGTCAGAGGAAAGCAATTCTGGAGCATCAGACAAATTAGAGAAACTACGGGAGAGGATGATTAAAGTGCGGGAGCTTTTTCGTGATACCGATTCCACAGAATTTGTCATAGTAACAATACCCACGGTCATGGCAGTCAGTGAGTCATCTAGGTTGCATGCCTCTTTGAAGAAGGAAACTGTTCCTGTGAAGCGACTTATTGTTAATCAGATTCTTCCCCCATCTGCCTCAGACTGCAAATTTTGTTCAATAAAAAGAAAGGTAAGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArsA_ATPase

Protein Analysis

377

Amino Acids

40.7

Weight (kDa)

9.11

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArsA_ATPase PF02374 96 - 375 1.4e-65 Anion-transporting ATPase
CbiA PF01656 100 - 299 4.8e-08 CobQ/CobB/MinD/ParA nucleotide binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010871)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10350
fragaria_vesca FvH4_7g18990 FvH4_7g18990
malus_domestica MD01G1105500.v1.1 MD07G1171700.v1.1
prunus_persica Prupe.2G211000_v2.0.a1 Prupe.2G211000_v2.0.a1 Prupe.2G211000_v2.0.a1
pyrus_communis pycom01g13230 pycom07g16630
rosa_chinensis RchiOBHm_Chr1g0362921
rosa_laevigata RLG00000027612
rosa_multiflora Rmu_sc0001502.1_g000006
rosa_roxburghii Rroxscaffold_4G00293650
rosa_rugosa Rorug01G0302100
rosa_samantha Rh1AG311600 Rh1BG274700 Rh1CG291900 Rh1DG305400
rosa_wichuraiana Rw1G027610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 461
AciI CCGC 4 cut(s) 180, 191, 239, 931
AclWI GGATC 1 cut(s) 389
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 3 cut(s) 518, 962, 1100
AfaI GTAC 2 cut(s) 34, 453
AfiI CCNNNNNNNGG 4 cut(s) 461, 505, 647, 861
AflIII ACRYGT 2 cut(s) 35, 711
AgsI TTSAA 8 cut(s) 68, 133, 209, 260, 523, 811, 1030, 1110
AhlI ACTAGT 1 cut(s) 29
AjnI CCWGG 1 cut(s) 646
AleI CACNNNNGTG 1 cut(s) 380
AluBI AGCT 6 cut(s) 156, 245, 330, 662, 814, 937
AluI AGCT 6 cut(s) 156, 245, 330, 662, 814, 937
AlwI GGATC 1 cut(s) 389
Ama87I CYCGRG 1 cut(s) 500
AoxI GGCC 4 cut(s) 228, 464, 580, 748
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 3 cut(s) 518, 962, 1100
Asp700I GAANNNNTTC 1 cut(s) 1041
AspS9I GGNCC 3 cut(s) 464, 580, 748
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 690, 691
AvaI CYCGRG 1 cut(s) 500
BaeI ACNNNNGTAYC 2 cut(s) 435, 468
BalI TGGCCA 1 cut(s) 230
BbvCI CCTCAGC 1 cut(s) 841
BbvI GCAGC 1 cut(s) 322
BccI CCATC 5 cut(s) 259, 455, 566, 854, 1090
BciT130I CCWGG 1 cut(s) 648
BcnI CCSGG 1 cut(s) 253
BcuI ACTAGT 1 cut(s) 29
BfaI CTAG 4 cut(s) 30, 299, 632, 1011
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 2 cut(s) 253, 648
BmeT110I CYCGRG 1 cut(s) 500
BmgT120I GGNCC 3 cut(s) 464, 580, 748
BmrFI CCNGG 2 cut(s) 253, 648
BmrI ACTGGG 1 cut(s) 629
BmsI GCATC 6 cut(s) 379, 460, 579, 778, 800, 896
BmuI ACTGGG 1 cut(s) 629
BpmI CTGGAG 3 cut(s) 459, 509, 903
Bpu10I CCTNAGC 2 cut(s) 426, 841
BpuEI CTTGAG 1 cut(s) 430
BpuMI CCSGG 1 cut(s) 253
BsaAI YACGTR 1 cut(s) 36
BsaJI CCNNGG 3 cut(s) 583, 744, 984
BsaXI ACNNNNNCTCC 2 cut(s) 628, 658
Bsc4I CCNNNNNNNGG 4 cut(s) 461, 505, 647, 861
Bse1I ACTGG 3 cut(s) 442, 455, 624
Bse3DI GCAATG 2 cut(s) 90, 755
BseBI CCWGG 1 cut(s) 648
BseDI CCNNGG 3 cut(s) 583, 744, 984
BseGI GGATG 6 cut(s) 370, 577, 594, 661, 793, 924
BseLI CCNNNNNNNGG 4 cut(s) 461, 505, 647, 861
BseMI GCAATG 2 cut(s) 90, 755
BseMII CTCAG 4 cut(s) 293, 440, 855, 1104
BseNI ACTGG 3 cut(s) 442, 455, 624
BseRI GAGGAG 1 cut(s) 633
BseXI GCAGC 1 cut(s) 322
BseYI CCCAGC 1 cut(s) 272
BsgI GTGCAG 1 cut(s) 723
BshFI GGCC 4 cut(s) 230, 466, 582, 750
BsiHKCI CYCGRG 1 cut(s) 500
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 4 cut(s) 461, 505, 647, 861
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 4 cut(s) 230, 466, 582, 750
BsoBI CYCGRG 1 cut(s) 500
Bsp143I GATC 2 cut(s) 221, 394
BspACI CCGC 4 cut(s) 180, 191, 239, 931
BspANI GGCC 4 cut(s) 230, 466, 582, 750
BspCNI CTCAG 4 cut(s) 292, 439, 854, 1103
BspPI GGATC 1 cut(s) 389
BsrDI GCAATG 2 cut(s) 90, 755
BsrI ACTGG 3 cut(s) 442, 455, 624
BssECI CCNNGG 3 cut(s) 583, 744, 984
BssMI GATC 2 cut(s) 221, 394
BssT1I CCWWGG 1 cut(s) 583
Bst2UI CCWGG 1 cut(s) 648
Bst4CI ACNGT 3 cut(s) 603, 988, 1042
Bst6I CTCTTC 1 cut(s) 255
BstBAI YACGTR 1 cut(s) 36
BstC8I GCNNGC 3 cut(s) 446, 594, 1020
BstDEI CTNAG 6 cut(s) 279, 426, 675, 815, 841, 1090
BstDSI CCRYGG 2 cut(s) 744, 984
BstF5I GGATG 6 cut(s) 370, 577, 594, 661, 793, 924
BstKTI GATC 2 cut(s) 224, 397
BstMBI GATC 2 cut(s) 221, 394
BstMWI GCNNNNNNNGC 3 cut(s) 236, 344, 842
BstNI CCWGG 1 cut(s) 648
BstNSI RCATGY 3 cut(s) 298, 715, 1022
BstSCI CCNGG 2 cut(s) 251, 646
BstV1I GCAGC 1 cut(s) 322
BstXI CCANNNNNNTGG 3 cut(s) 97, 382, 991
BsuRI GGCC 4 cut(s) 230, 466, 582, 750
BtgI CCRYGG 2 cut(s) 744, 984
BtsCI GGATG 6 cut(s) 370, 577, 594, 661, 793, 924
BtsIMutI CAGTG 3 cut(s) 231, 390, 1006
Cac8I GCNNGC 3 cut(s) 446, 594, 1020
Cfr13I GGNCC 3 cut(s) 464, 580, 748
Csp6I GTAC 2 cut(s) 33, 452
CspCI CAANNNNNGTGG 2 cut(s) 946, 981
CviAII CATG 4 cut(s) 295, 712, 991, 1019
CviQI GTAC 2 cut(s) 33, 452
DdeI CTNAG 6 cut(s) 279, 426, 675, 815, 841, 1090
DpnI GATC 2 cut(s) 223, 396
DpnII GATC 2 cut(s) 221, 394
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 583
Eco32I GATATC 1 cut(s) 828
Eco88I CYCGRG 1 cut(s) 500
EcoRI GAATTC 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 646
EcoRV GATATC 1 cut(s) 828
EcoT14I CCWWGG 1 cut(s) 583
EcoT22I ATGCAT 1 cut(s) 793
ErhI CCWWGG 1 cut(s) 583
FaeI CATG 4 cut(s) 298, 715, 994, 1022
FaqI GGGAC 1 cut(s) 289
FatI CATG 4 cut(s) 294, 711, 990, 1018
FauI CCCGC 1 cut(s) 924
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 6 cut(s) 357, 584, 601, 668, 800, 931
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 4 cut(s) 30, 299, 632, 1011
GluI GCNGC 1 cut(s) 336
GsaI CCCAGC 1 cut(s) 276
GsuI CTGGAG 3 cut(s) 459, 509, 903
HaeIII GGCC 4 cut(s) 230, 466, 582, 750
HapII CCGG 1 cut(s) 252
Hin1II CATG 4 cut(s) 298, 715, 994, 1022
HindIII AAGCTT 1 cut(s) 812
HinfI GANTC 6 cut(s) 277, 416, 695, 953, 1004, 1072
HpaII CCGG 1 cut(s) 252
HphI GGTGA 2 cut(s) 690, 691
Hpy166II GTNNAC 2 cut(s) 170, 717
Hpy188I TCNGA 4 cut(s) 868, 892, 1071, 1093
Hpy188III TCNNGA 6 cut(s) 81, 428, 488, 692, 882, 944
Hpy8I GTNNAC 2 cut(s) 170, 717
HpyAV CCTTC 3 cut(s) 61, 499, 1027
HpyCH4III ACNGT 3 cut(s) 603, 988, 1042
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 5 cut(s) 530, 740, 791, 1018, 1098
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 344, 842
HpyF3I CTNAG 6 cut(s) 279, 426, 675, 815, 841, 1090
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 4 cut(s) 298, 715, 994, 1022
Kzo9I GATC 2 cut(s) 221, 394
LmnI GCTCC 4 cut(s) 124, 478, 884, 934
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 6 cut(s) 379, 460, 579, 778, 800, 896
MaeI CTAG 4 cut(s) 30, 299, 632, 1011
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 2 cut(s) 3, 973
MalI GATC 2 cut(s) 223, 396
MboI GATC 2 cut(s) 221, 394
MboII GAAGA 6 cut(s) 56, 272, 527, 822, 1042, 1067
MfeI CAATTG 1 cut(s) 795
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 9 cut(s) 200, 209, 518, 686, 795, 877, 896, 962, 1100
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 2 cut(s) 271, 1013
MmeI TCCRAC 1 cut(s) 298
Mox20I TGGCCA 1 cut(s) 230
Mph1103I ATGCAT 1 cut(s) 793
MroXI GAANNNNTTC 1 cut(s) 1041
MscI TGGCCA 1 cut(s) 230
MseI TTAA 3 cut(s) 614, 924, 1065
MslI CAYNNNNRTG 3 cut(s) 95, 380, 989
Msp20I TGGCCA 1 cut(s) 230
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 2 cut(s) 253, 648
MunI CAATTG 1 cut(s) 795
MvaI CCWGG 1 cut(s) 648
MwoI GCNNNNNNNGC 3 cut(s) 236, 344, 842
NciI CCSGG 1 cut(s) 253
NdeII GATC 2 cut(s) 221, 394
NlaIII CATG 4 cut(s) 298, 715, 994, 1022
NsiI ATGCAT 1 cut(s) 793
NspI RCATGY 3 cut(s) 298, 715, 1022
OliI CACNNNNGTG 1 cut(s) 380
PaeI GCATGC 1 cut(s) 1022
PciI ACATGT 1 cut(s) 711
PdmI GAANNNNTTC 1 cut(s) 1041
PfeI GAWTC 4 cut(s) 416, 695, 953, 1072
PflMI CCANNNNNTGG 1 cut(s) 461
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 2 cut(s) 271, 1012
PpsI GAGTC 2 cut(s) 271, 1012
Ppu21I YACGTR 1 cut(s) 36
PscI ACATGT 1 cut(s) 711
Psp6I CCWGG 1 cut(s) 646
PspFI CCCAGC 1 cut(s) 272
PspGI CCWGG 1 cut(s) 646
PspPI GGNCC 3 cut(s) 464, 580, 748
RsaI GTAC 2 cut(s) 34, 453
RsaNI GTAC 2 cut(s) 33, 452
RseI CAYNNNNRTG 3 cut(s) 95, 380, 989
SaqAI TTAA 3 cut(s) 614, 924, 1065
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 2 cut(s) 221, 394
Sau96I GGNCC 3 cut(s) 464, 580, 748
SchI GAGTC 2 cut(s) 271, 1013
ScrFI CCNGG 2 cut(s) 253, 648
SfaNI GCATC 6 cut(s) 379, 460, 579, 778, 800, 896
SmiMI CAYNNNNRTG 3 cut(s) 95, 380, 989
SmlI CTYRAG 1 cut(s) 409
SmoI CTYRAG 1 cut(s) 409
SpeI ACTAGT 1 cut(s) 29
SphI GCATGC 1 cut(s) 1022
Sse9I AATT 9 cut(s) 200, 209, 518, 686, 795, 877, 896, 962, 1100
SsiI CCGC 4 cut(s) 180, 191, 239, 931
SspMI CTAG 4 cut(s) 30, 299, 632, 1011
StyD4I CCNGG 2 cut(s) 251, 646
StyI CCWWGG 1 cut(s) 583
TaaI ACNGT 3 cut(s) 603, 988, 1042
TaiI ACGT 1 cut(s) 38
TaqI TCGA 1 cut(s) 693
TasI AATT 9 cut(s) 200, 209, 518, 686, 795, 877, 896, 962, 1100
TfiI GAWTC 4 cut(s) 416, 695, 953, 1072
Tru1I TTAA 3 cut(s) 614, 924, 1065
Tru9I TTAA 3 cut(s) 614, 924, 1065
TscAI CASTG 3 cut(s) 231, 397, 1006
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 1 cut(s) 672
TspGWI ACGGA 1 cut(s) 844
TspRI CASTG 3 cut(s) 231, 397, 1006
Van91I CCANNNNNTGG 1 cut(s) 461
XapI RAATTY 3 cut(s) 518, 962, 1100
XceI RCATGY 3 cut(s) 298, 715, 1022
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XmnI GAANNNNTTC 1 cut(s) 1041
XspI CTAG 4 cut(s) 30, 299, 632, 1011
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.