Rh1BG274700

Arsenical pump-driving

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0010871
Physical Location & Seq
Reverse (-)
41106072 .. 41109760
3689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG274700.1

Sequence Viewer

Length: 1260 bp
ATGTTACCAGAAAACAATCAAATGGCGACTAGTACGTGTATTCCCTCCACCTTCACACCCATTCTTCAAAACTTGACTTCCAGAAACTCCATTGCTATGGTGGGTTTGCTCTCTTATGCTCCCAAAACCTTGAAGCCTCTCTCTTATGCCCAGAGCTTCGGTTTCAGTTCACTTTCCACCGCCAGAAAACCGCCCAGAAAATTGCTTCAATTCCAAGTGAGATCAGTGGCCACTCCTGCGGAAGCTGTTGCCGGGTTTGAAGAGATGGTTGCTGGGACTCAGCGAAAGTATTACATGCTAGGTGGTAAAGGTGGAGTTGGAAAGACGAGCTGTGCTGCTTCACTTGCTGTAAAGTTTGCTAACAATGGGCATCCCACTCTTGTGGTTTCCACTGATCCAGCACATTCCTTGAGTGATTCCTTTGCTCAGGATTTGACTGGAGGCACGCTTGTACCAGTTGATGGGCCTGATGCTCCACTTTTTGCTCTGGAGATAAACCCCGAGAAGGCAAGGGAAGAATTCAAAACTGCAAGTAAGAAAAATGGTGGAACAGGGGTCAAAGATTTTATGGATGGAATGGGCCTTGGGATGCTTGCTGAACAGTTGGGAGAGTTAAAACTGGGAGAACTGCTAGACACACCTCCTCCTGGTTTGGATGAAGCTATTGCGATTTCTAAGGTGATACAATTTCTCGAATCACCAGAATATAACATGTTTACTCGTATCGTCTTTGATACTGCACCCACGGGCCATACATTGCGACTTTTATCCTTGCCAGACTTCTTGGATGCATCAATTGGCAAGATATTGAAGCTTAGACAAAAGATATCTTCTGCCACCTCAGCCATCAAATCCGTTTTTGGGTCAGAGGAAAGCAATTCTGGAGCATCAGACAAATTAGAGAAACTACGGGAGAGGATGATTAAAGTGCGGGAGCTTTTTCGTGATACCGATTCCACAGAATTTGTCATAGTAACAATACCCACGGTCATGGCAGTCAGTGAGTCATCTAGGTTGCATGCCTCTTTGAAGAAGGAAACTGTTCCTGTGAAGCGACTTATTGTTAATCAGATTCTTCCCCCATCTGCCTCAGACTGCAAATTTTGTTCAATAAAAAGAAAGGATCAGATGCGTGCTCTTGATATGATCCGGAGTGATATAGAGCTGTCTGACTTGACATTGATCCAGGCTCCACTAGTTGACATGGAGATCAGAGGAGTGCCTGCCCTTCGATTTCTGGGAGACATGATTTGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArsA_ATPase

Protein Analysis

419

Amino Acids

45.5

Weight (kDa)

8.51

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArsA_ATPase PF02374 96 - 417 2e-73 Anion-transporting ATPase
CbiA PF01656 100 - 357 3.6e-08 CobQ/CobB/MinD/ParA nucleotide binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010871)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10350
fragaria_vesca FvH4_7g18990 FvH4_7g18990
malus_domestica MD01G1105500.v1.1 MD07G1171700.v1.1
prunus_persica Prupe.2G211000_v2.0.a1 Prupe.2G211000_v2.0.a1 Prupe.2G211000_v2.0.a1
pyrus_communis pycom01g13230 pycom07g16630
rosa_chinensis RchiOBHm_Chr1g0362921
rosa_laevigata RLG00000027612
rosa_multiflora Rmu_sc0001502.1_g000006
rosa_roxburghii Rroxscaffold_4G00293650
rosa_rugosa Rorug01G0302100
rosa_samantha Rh1AG311600 Rh1BG274700 Rh1CG291900 Rh1DG305400
rosa_wichuraiana Rw1G027610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 461
AccIII TCCGGA 1 cut(s) 1149
AciI CCGC 4 cut(s) 180, 191, 239, 931
AclWI GGATC 4 cut(s) 389, 1131, 1141, 1177
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 3 cut(s) 518, 962, 1100
AfaI GTAC 2 cut(s) 34, 453
AfiI CCNNNNNNNGG 4 cut(s) 461, 505, 647, 861
AflIII ACRYGT 2 cut(s) 35, 711
AgsI TTSAA 8 cut(s) 68, 133, 209, 260, 523, 811, 1030, 1110
AhlI ACTAGT 2 cut(s) 29, 1195
AjnI CCWGG 2 cut(s) 646, 1185
AleI CACNNNNGTG 1 cut(s) 380
AluBI AGCT 7 cut(s) 156, 245, 330, 662, 814, 937, 1165
AluI AGCT 7 cut(s) 156, 245, 330, 662, 814, 937, 1165
Alw21I GWGCWC 1 cut(s) 1138
Alw26I GTCTC 1 cut(s) 1236
AlwI GGATC 4 cut(s) 389, 1131, 1141, 1177
Ama87I CYCGRG 1 cut(s) 500
Aor13HI TCCGGA 1 cut(s) 1149
AoxI GGCC 4 cut(s) 228, 464, 580, 748
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 3 cut(s) 518, 962, 1100
Asp700I GAANNNNTTC 1 cut(s) 1041
AspS9I GGNCC 3 cut(s) 464, 580, 748
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 690, 691
AvaI CYCGRG 1 cut(s) 500
BaeI ACNNNNGTAYC 2 cut(s) 435, 468
BalI TGGCCA 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 1138
BbvCI CCTCAGC 1 cut(s) 841
BbvI GCAGC 1 cut(s) 322
BccI CCATC 5 cut(s) 259, 455, 566, 854, 1090
BciT130I CCWGG 2 cut(s) 648, 1187
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 1236
BcuI ACTAGT 2 cut(s) 29, 1195
BfaI CTAG 5 cut(s) 30, 299, 632, 1011, 1196
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 3 cut(s) 253, 648, 1187
BmeT110I CYCGRG 1 cut(s) 500
BmgT120I GGNCC 3 cut(s) 464, 580, 748
BmiI GGNNCC 1 cut(s) 1191
BmrFI CCNGG 3 cut(s) 253, 648, 1187
BmrI ACTGGG 1 cut(s) 629
BmsI GCATC 7 cut(s) 379, 460, 579, 778, 800, 896, 1119
BmuI ACTGGG 1 cut(s) 629
BpmI CTGGAG 3 cut(s) 459, 509, 903
Bpu10I CCTNAGC 2 cut(s) 426, 841
BpuEI CTTGAG 1 cut(s) 430
BpuMI CCSGG 1 cut(s) 253
BsaAI YACGTR 1 cut(s) 36
BsaJI CCNNGG 3 cut(s) 583, 744, 984
BsaWI WCCGGW 1 cut(s) 1149
BsaXI ACNNNNNCTCC 2 cut(s) 628, 658
Bsc4I CCNNNNNNNGG 4 cut(s) 461, 505, 647, 861
Bse1I ACTGG 3 cut(s) 442, 455, 624
Bse3DI GCAATG 2 cut(s) 90, 755
BseAI TCCGGA 1 cut(s) 1149
BseBI CCWGG 2 cut(s) 648, 1187
BseDI CCNNGG 3 cut(s) 583, 744, 984
BseGI GGATG 6 cut(s) 370, 577, 594, 661, 793, 924
BseLI CCNNNNNNNGG 4 cut(s) 461, 505, 647, 861
BseMI GCAATG 2 cut(s) 90, 755
BseMII CTCAG 4 cut(s) 293, 440, 855, 1104
BseNI ACTGG 3 cut(s) 442, 455, 624
BseRI GAGGAG 2 cut(s) 633, 1230
BseXI GCAGC 1 cut(s) 322
BseYI CCCAGC 1 cut(s) 272
BsgI GTGCAG 1 cut(s) 723
BshFI GGCC 4 cut(s) 230, 466, 582, 750
BsiHKAI GWGCWC 1 cut(s) 1138
BsiHKCI CYCGRG 1 cut(s) 500
BsiSI CCGG 2 cut(s) 252, 1150
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 4 cut(s) 461, 505, 647, 861
BsmAI GTCTC 1 cut(s) 1236
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 4 cut(s) 230, 466, 582, 750
BsoBI CYCGRG 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 1138
Bsp13I TCCGGA 1 cut(s) 1149
Bsp143I GATC 6 cut(s) 221, 394, 1123, 1146, 1182, 1209
BspACI CCGC 4 cut(s) 180, 191, 239, 931
BspANI GGCC 4 cut(s) 230, 466, 582, 750
BspCNI CTCAG 4 cut(s) 292, 439, 854, 1103
BspEI TCCGGA 1 cut(s) 1149
BspLI GGNNCC 1 cut(s) 1191
BspPI GGATC 4 cut(s) 389, 1131, 1141, 1177
BsrDI GCAATG 2 cut(s) 90, 755
BsrI ACTGG 3 cut(s) 442, 455, 624
BssECI CCNNGG 3 cut(s) 583, 744, 984
BssMI GATC 6 cut(s) 221, 394, 1123, 1146, 1182, 1209
BssT1I CCWWGG 1 cut(s) 583
Bst2UI CCWGG 2 cut(s) 648, 1187
Bst4CI ACNGT 3 cut(s) 603, 988, 1042
Bst6I CTCTTC 1 cut(s) 255
BstBAI YACGTR 1 cut(s) 36
BstC8I GCNNGC 5 cut(s) 446, 594, 1020, 1134, 1224
BstDEI CTNAG 6 cut(s) 279, 426, 675, 815, 841, 1090
BstDSI CCRYGG 2 cut(s) 744, 984
BstF5I GGATG 6 cut(s) 370, 577, 594, 661, 793, 924
BstKTI GATC 6 cut(s) 224, 397, 1126, 1149, 1185, 1212
BstMAI GTCTC 1 cut(s) 1236
BstMBI GATC 6 cut(s) 221, 394, 1123, 1146, 1182, 1209
BstMWI GCNNNNNNNGC 3 cut(s) 236, 344, 842
BstNI CCWGG 2 cut(s) 648, 1187
BstNSI RCATGY 3 cut(s) 298, 715, 1022
BstSCI CCNGG 3 cut(s) 251, 646, 1185
BstV1I GCAGC 1 cut(s) 322
BstXI CCANNNNNNTGG 3 cut(s) 97, 382, 991
BsuRI GGCC 4 cut(s) 230, 466, 582, 750
BtgI CCRYGG 2 cut(s) 744, 984
BtsCI GGATG 6 cut(s) 370, 577, 594, 661, 793, 924
BtsIMutI CAGTG 3 cut(s) 231, 390, 1006
Cac8I GCNNGC 5 cut(s) 446, 594, 1020, 1134, 1224
Cfr13I GGNCC 3 cut(s) 464, 580, 748
Csp6I GTAC 2 cut(s) 33, 452
CspCI CAANNNNNGTGG 2 cut(s) 946, 981
CviAII CATG 6 cut(s) 295, 712, 991, 1019, 1204, 1246
CviQI GTAC 2 cut(s) 33, 452
DdeI CTNAG 6 cut(s) 279, 426, 675, 815, 841, 1090
DpnI GATC 6 cut(s) 223, 396, 1125, 1148, 1184, 1211
DpnII GATC 6 cut(s) 221, 394, 1123, 1146, 1182, 1209
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 583
Eco32I GATATC 1 cut(s) 828
Eco88I CYCGRG 1 cut(s) 500
EcoRI GAATTC 1 cut(s) 518
EcoRII CCWGG 2 cut(s) 646, 1185
EcoRV GATATC 1 cut(s) 828
EcoT14I CCWWGG 1 cut(s) 583
EcoT22I ATGCAT 1 cut(s) 793
ErhI CCWWGG 1 cut(s) 583
FaeI CATG 6 cut(s) 298, 715, 994, 1022, 1207, 1249
FaqI GGGAC 1 cut(s) 289
FatI CATG 6 cut(s) 294, 711, 990, 1018, 1203, 1245
FauI CCCGC 1 cut(s) 924
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 6 cut(s) 357, 584, 601, 668, 800, 931
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 5 cut(s) 30, 299, 632, 1011, 1196
GluI GCNGC 1 cut(s) 336
GsaI CCCAGC 1 cut(s) 276
GsuI CTGGAG 3 cut(s) 459, 509, 903
HaeIII GGCC 4 cut(s) 230, 466, 582, 750
HapII CCGG 2 cut(s) 252, 1150
Hin1II CATG 6 cut(s) 298, 715, 994, 1022, 1207, 1249
HincII GTYRAC 1 cut(s) 1201
HindII GTYRAC 1 cut(s) 1201
HindIII AAGCTT 1 cut(s) 812
HinfI GANTC 6 cut(s) 277, 416, 695, 953, 1004, 1072
HpaII CCGG 2 cut(s) 252, 1150
HphI GGTGA 2 cut(s) 690, 691
Hpy166II GTNNAC 3 cut(s) 170, 717, 1201
Hpy188I TCNGA 7 cut(s) 868, 892, 1071, 1093, 1128, 1171, 1214
Hpy188III TCNNGA 8 cut(s) 81, 428, 488, 692, 882, 944, 1139, 1150
Hpy8I GTNNAC 3 cut(s) 170, 717, 1201
HpyAV CCTTC 4 cut(s) 61, 499, 1027, 1238
HpyCH4III ACNGT 3 cut(s) 603, 988, 1042
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 5 cut(s) 530, 740, 791, 1018, 1098
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 344, 842
HpyF3I CTNAG 6 cut(s) 279, 426, 675, 815, 841, 1090
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 6 cut(s) 298, 715, 994, 1022, 1207, 1249
Kpn2I TCCGGA 1 cut(s) 1149
Kzo9I GATC 6 cut(s) 221, 394, 1123, 1146, 1182, 1209
LmnI GCTCC 5 cut(s) 124, 478, 884, 934, 1195
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 7 cut(s) 379, 460, 579, 778, 800, 896, 1119
MaeI CTAG 5 cut(s) 30, 299, 632, 1011, 1196
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 2 cut(s) 3, 973
MalI GATC 6 cut(s) 223, 396, 1125, 1148, 1184, 1211
MboI GATC 6 cut(s) 221, 394, 1123, 1146, 1182, 1209
MboII GAAGA 6 cut(s) 56, 272, 527, 822, 1042, 1067
MfeI CAATTG 1 cut(s) 795
MhlI GDGCHC 1 cut(s) 1138
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 9 cut(s) 200, 209, 518, 686, 795, 877, 896, 962, 1100
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 2 cut(s) 271, 1013
MmeI TCCRAC 1 cut(s) 298
Mox20I TGGCCA 1 cut(s) 230
Mph1103I ATGCAT 1 cut(s) 793
MroI TCCGGA 1 cut(s) 1149
MroXI GAANNNNTTC 1 cut(s) 1041
MscI TGGCCA 1 cut(s) 230
MseI TTAA 3 cut(s) 614, 924, 1065
MslI CAYNNNNRTG 3 cut(s) 95, 380, 989
Msp20I TGGCCA 1 cut(s) 230
MspI CCGG 2 cut(s) 252, 1150
MspR9I CCNGG 3 cut(s) 253, 648, 1187
MunI CAATTG 1 cut(s) 795
MvaI CCWGG 2 cut(s) 648, 1187
MwoI GCNNNNNNNGC 3 cut(s) 236, 344, 842
NciI CCSGG 1 cut(s) 253
NdeII GATC 6 cut(s) 221, 394, 1123, 1146, 1182, 1209
NlaIII CATG 6 cut(s) 298, 715, 994, 1022, 1207, 1249
NlaIV GGNNCC 1 cut(s) 1191
NsiI ATGCAT 1 cut(s) 793
NspI RCATGY 3 cut(s) 298, 715, 1022
OliI CACNNNNGTG 1 cut(s) 380
PaeI GCATGC 1 cut(s) 1022
PciI ACATGT 1 cut(s) 711
PdmI GAANNNNTTC 1 cut(s) 1041
PfeI GAWTC 4 cut(s) 416, 695, 953, 1072
PflMI CCANNNNNTGG 1 cut(s) 461
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 2 cut(s) 271, 1012
PpsI GAGTC 2 cut(s) 271, 1012
Ppu21I YACGTR 1 cut(s) 36
PscI ACATGT 1 cut(s) 711
Psp6I CCWGG 2 cut(s) 646, 1185
PspFI CCCAGC 1 cut(s) 272
PspGI CCWGG 2 cut(s) 646, 1185
PspN4I GGNNCC 1 cut(s) 1191
PspPI GGNCC 3 cut(s) 464, 580, 748
RsaI GTAC 2 cut(s) 34, 453
RsaNI GTAC 2 cut(s) 33, 452
RseI CAYNNNNRTG 3 cut(s) 95, 380, 989
SaqAI TTAA 3 cut(s) 614, 924, 1065
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 6 cut(s) 221, 394, 1123, 1146, 1182, 1209
Sau96I GGNCC 3 cut(s) 464, 580, 748
SchI GAGTC 2 cut(s) 271, 1013
ScrFI CCNGG 3 cut(s) 253, 648, 1187
SduI GDGCHC 1 cut(s) 1138
SfaNI GCATC 7 cut(s) 379, 460, 579, 778, 800, 896, 1119
SmiMI CAYNNNNRTG 3 cut(s) 95, 380, 989
SmlI CTYRAG 1 cut(s) 409
SmoI CTYRAG 1 cut(s) 409
SpeI ACTAGT 2 cut(s) 29, 1195
SphI GCATGC 1 cut(s) 1022
Sse9I AATT 9 cut(s) 200, 209, 518, 686, 795, 877, 896, 962, 1100
SsiI CCGC 4 cut(s) 180, 191, 239, 931
SspMI CTAG 5 cut(s) 30, 299, 632, 1011, 1196
StyD4I CCNGG 3 cut(s) 251, 646, 1185
StyI CCWWGG 1 cut(s) 583
TaaI ACNGT 3 cut(s) 603, 988, 1042
TaiI ACGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 693, 1231
TasI AATT 9 cut(s) 200, 209, 518, 686, 795, 877, 896, 962, 1100
TfiI GAWTC 4 cut(s) 416, 695, 953, 1072
Tru1I TTAA 3 cut(s) 614, 924, 1065
Tru9I TTAA 3 cut(s) 614, 924, 1065
TscAI CASTG 3 cut(s) 231, 397, 1006
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 1 cut(s) 672
TspGWI ACGGA 1 cut(s) 844
TspRI CASTG 3 cut(s) 231, 397, 1006
Van91I CCANNNNNTGG 1 cut(s) 461
XapI RAATTY 3 cut(s) 518, 962, 1100
XceI RCATGY 3 cut(s) 298, 715, 1022
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XmnI GAANNNNTTC 1 cut(s) 1041
XspI CTAG 5 cut(s) 30, 299, 632, 1011, 1196
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.