pycom01g13230

Arsenical pump-driving

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0010871
Physical Location & Seq
Reverse (-)
13748648 .. 13753194
4547 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g13230.8

Sequence Viewer

Length: 1242 bp
ATGTATTCCCTCCACTTTCACACCTATTCTACACAACTTAACCGCCAGAAACTCCATAACAATGGTGGGTTTGCTCTCTCATGCTCCCAAAATCCTCAGGCCTCTCTCTCTCCCCAAAAGCCTCGGTTTCAGCTCACTTTCCACCGCCACAAAACCCCCCAGAAAATTCCTCCATTTGCAAGGCCTAAATTTTGGTCAGTGAGATCGGTGGCCACTCCAGCAGAAGCTGTTGCCGGGTTTGATGACATGGTTGCTGGGACTCAGAGAAAGTATTACATGTTAGGCGGGAAGGGCGGTGTAGGGAAGACAAGTTGTGCTGCATCACTTGCTGTAAAATTCGCTAACAATGGGCATCCCACTCTTGTGGTTTCCACTGATCCAGCACATTCCTTGAGTGATTCCTTTGCTCAGGATTTGGCTGGAGGAACACTTGTACCAGTTGATGGGCCTGAAGCTCCGCTTTTTGCTCTTGAGATAAACCCTGAGAAGGCAAGGGAAGAATTCCGTAATGTAAGTCAGAAAAATGGTGGAACAGGAGTCAAAGATTTCATGGATGGTATGGGCCTTGGGATGCTTGCGGAACAGTTAGGAGAATTAAAACTGGGAGAATTACTAGACACGCCTCCTCCTGGTTTGGATGAAGCTATTGCAATTTCCAAGGTGATACAATTTCTTGAATCCCCGGAATATAGCATGTTTACTCGTATAGTTTTTGATACTGCACCCACGGGTCACACATTGCGGCTTTTGTCCTTGCCAGACTTTTTGGATGCATCAATTGGTAAAATATTGAAGCTTAAACAAAAGATATCGTCAGCCACCTCAGCAATCAAATCTGTTTTTGGGCAAGAGCAACCCCAATTGGGCGCGGCTGACAAATTAGAGAAACTAAGGGAGAGGATGATTAAAGTCCGTGAACTTTTTCGTGACACTGAGTCAACAGAGTTTGTCATAGTAACAATACCGACGGTGATGGCTGTTAGTGAGTCATCTAGATTGCATGCCTCTCTGAAGAAGGAAAGTGTTCCTGTGACTCGACTTATAGTTAATCAGATTCTTCCCCCGTCTGCCTCGGACTGCAAATTCTGTTCAATTAAAAGAAAGGATCAAATGCGTGCTCTTGATATGATCCGGAGCGATACAGAGCTATCCGGCTTGACAGTGATCCAGGCTCCACTGGTTGATGTGGAGATCAGAGGCGTTCCTGCCCTTAGTTTTCTGGGAGACATAATTTGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArsA_ATPase

Protein Analysis

414

Amino Acids

45.15

Weight (kDa)

8.87

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010871)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10350
fragaria_vesca FvH4_7g18990 FvH4_7g18990
malus_domestica MD01G1105500.v1.1 MD07G1171700.v1.1
prunus_persica Prupe.2G211000_v2.0.a1 Prupe.2G211000_v2.0.a1 Prupe.2G211000_v2.0.a1
pyrus_communis pycom01g13230 pycom07g16630
rosa_chinensis RchiOBHm_Chr1g0362921
rosa_laevigata RLG00000027612
rosa_multiflora Rmu_sc0001502.1_g000006
rosa_roxburghii Rroxscaffold_4G00293650
rosa_rugosa Rorug01G0302100
rosa_samantha Rh1AG311600 Rh1BG274700 Rh1CG291900 Rh1DG305400
rosa_wichuraiana Rw1G027610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 443
AccII CGCG 1 cut(s) 869
AccIII TCCGGA 1 cut(s) 1131
AciI CCGC 8 cut(s) 43, 145, 285, 294, 458, 578, 742, 869
AclWI GGATC 4 cut(s) 371, 1113, 1123, 1159
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 5 cut(s) 165, 188, 335, 500, 1082
AcuI CTGAAG 2 cut(s) 471, 1031
AfaI GTAC 1 cut(s) 435
AfiI CCNNNNNNNGG 4 cut(s) 443, 487, 629, 863
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 3 cut(s) 677, 793, 1092
AhdI GACNNNNNGTC 1 cut(s) 934
AjnI CCWGG 2 cut(s) 628, 1167
AleI CACNNNNGTG 1 cut(s) 362
AluBI AGCT 6 cut(s) 133, 227, 455, 644, 796, 1147
AluI AGCT 6 cut(s) 133, 227, 455, 644, 796, 1147
Alw21I GWGCWC 1 cut(s) 1120
Alw26I GTCTC 1 cut(s) 1218
AlwI GGATC 4 cut(s) 371, 1113, 1123, 1159
AlwNI CAGNNNCTG 1 cut(s) 227
Aor13HI TCCGGA 1 cut(s) 1131
AoxI GGCC 5 cut(s) 99, 182, 210, 446, 562
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 5 cut(s) 165, 188, 335, 500, 1082
Asp700I GAANNNNTTC 2 cut(s) 921, 1023
AspLEI GCGC 1 cut(s) 869
AspS9I GGNCC 2 cut(s) 446, 562
AsuC2I CCSGG 2 cut(s) 235, 683
AsuHPI GGTGA 2 cut(s) 673, 982
AxyI CCTNAGG 1 cut(s) 96
BaeI ACNNNNGTAYC 2 cut(s) 417, 450
BalI TGGCCA 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 1120
BbvCI CCTCAGC 1 cut(s) 823
BbvI GCAGC 1 cut(s) 304
BccI CCATC 3 cut(s) 437, 548, 967
BciT130I CCWGG 2 cut(s) 630, 1169
BcnI CCSGG 2 cut(s) 235, 683
BcoDI GTCTC 1 cut(s) 1218
BfaI CTAG 2 cut(s) 614, 993
BisI GCNGC 3 cut(s) 318, 743, 870
BlsI GCNGC 3 cut(s) 319, 744, 871
Bme1390I CCNGG 4 cut(s) 235, 630, 683, 1169
BmeRI GACNNNNNGTC 1 cut(s) 934
BmgT120I GGNCC 2 cut(s) 446, 562
BmiI GGNNCC 1 cut(s) 1173
BmrFI CCNGG 4 cut(s) 235, 630, 683, 1169
BmrI ACTGGG 1 cut(s) 611
BmsI GCATC 5 cut(s) 329, 361, 561, 760, 782
BmuI ACTGGG 1 cut(s) 611
BpiI GAAGAC 1 cut(s) 311
BpmI CTGGAG 2 cut(s) 201, 441
Bpu10I CCTNAGC 2 cut(s) 408, 823
BpuEI CTTGAG 2 cut(s) 412, 491
BpuMI CCSGG 2 cut(s) 235, 683
BsaJI CCNNGG 6 cut(s) 122, 565, 657, 681, 726, 1071
BsaWI WCCGGW 1 cut(s) 1131
BsaXI ACNNNNNCTCC 2 cut(s) 610, 640
Bsc4I CCNNNNNNNGG 4 cut(s) 443, 487, 629, 863
Bse1I ACTGG 3 cut(s) 437, 606, 1182
Bse21I CCTNAGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 737
BseAI TCCGGA 1 cut(s) 1131
BseBI CCWGG 2 cut(s) 630, 1169
BseDI CCNNGG 6 cut(s) 122, 565, 657, 681, 726, 1071
BseGI GGATG 6 cut(s) 352, 559, 576, 643, 775, 906
BseLI CCNNNNNNNGG 4 cut(s) 443, 487, 629, 863
BseMI GCAATG 1 cut(s) 737
BseMII CTCAG 6 cut(s) 110, 275, 422, 474, 837, 924
BseNI ACTGG 3 cut(s) 437, 606, 1182
BseRI GAGGAG 1 cut(s) 615
BseXI GCAGC 1 cut(s) 304
BseYI CCCAGC 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 705
Bsh1236I CGCG 1 cut(s) 869
BshFI GGCC 5 cut(s) 101, 184, 212, 448, 564
BsiHKAI GWGCWC 1 cut(s) 1120
BsiSI CCGG 4 cut(s) 234, 683, 1132, 1152
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 4 cut(s) 443, 487, 629, 863
BsmAI GTCTC 1 cut(s) 1218
BsmFI GGGAC 1 cut(s) 271
BsnI GGCC 5 cut(s) 101, 184, 212, 448, 564
Bsp1286I GDGCHC 1 cut(s) 1120
Bsp13I TCCGGA 1 cut(s) 1131
Bsp143I GATC 6 cut(s) 203, 376, 1105, 1128, 1164, 1191
BspACI CCGC 8 cut(s) 43, 145, 285, 294, 458, 578, 742, 869
BspANI GGCC 5 cut(s) 101, 184, 212, 448, 564
BspCNI CTCAG 6 cut(s) 109, 274, 421, 475, 836, 925
BspEI TCCGGA 1 cut(s) 1131
BspFNI CGCG 1 cut(s) 869
BspLI GGNNCC 1 cut(s) 1173
BspPI GGATC 4 cut(s) 371, 1113, 1123, 1159
BsrDI GCAATG 1 cut(s) 737
BsrI ACTGG 3 cut(s) 437, 606, 1182
BssECI CCNNGG 6 cut(s) 122, 565, 657, 681, 726, 1071
BssMI GATC 6 cut(s) 203, 376, 1105, 1128, 1164, 1191
BssT1I CCWWGG 2 cut(s) 565, 657
Bst2UI CCWGG 2 cut(s) 630, 1169
Bst4CI ACNGT 3 cut(s) 585, 970, 1162
BstAPI GCANNNNNTGC 1 cut(s) 326
BstC8I GCNNGC 3 cut(s) 576, 1002, 1116
BstDEI CTNAG 8 cut(s) 96, 261, 408, 483, 823, 890, 933, 1211
BstDSI CCRYGG 1 cut(s) 726
BstF5I GGATG 6 cut(s) 352, 559, 576, 643, 775, 906
BstFNI CGCG 1 cut(s) 869
BstHHI GCGC 1 cut(s) 869
BstKTI GATC 6 cut(s) 206, 379, 1108, 1131, 1167, 1194
BstMAI GTCTC 1 cut(s) 1218
BstMBI GATC 6 cut(s) 203, 376, 1105, 1128, 1164, 1191
BstMWI GCNNNNNNNGC 4 cut(s) 218, 291, 326, 824
BstNI CCWGG 2 cut(s) 630, 1169
BstNSI RCATGY 3 cut(s) 280, 697, 1004
BstSCI CCNGG 4 cut(s) 233, 628, 681, 1167
BstUI CGCG 1 cut(s) 869
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 311
BstXI CCANNNNNNTGG 2 cut(s) 62, 364
Bsu36I CCTNAGG 1 cut(s) 96
BsuRI GGCC 5 cut(s) 101, 184, 212, 448, 564
BtgI CCRYGG 1 cut(s) 726
BtsCI GGATG 6 cut(s) 352, 559, 576, 643, 775, 906
BtsIMutI CAGTG 5 cut(s) 204, 372, 930, 1167, 1175
Cac8I GCNNGC 3 cut(s) 576, 1002, 1116
CaiI CAGNNNCTG 1 cut(s) 227
CfoI GCGC 1 cut(s) 869
Cfr13I GGNCC 2 cut(s) 446, 562
Csp6I GTAC 1 cut(s) 434
CviAII CATG 6 cut(s) 81, 247, 277, 550, 694, 1001
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 8 cut(s) 96, 261, 408, 483, 823, 890, 933, 1211
DpnI GATC 6 cut(s) 205, 378, 1107, 1130, 1166, 1193
DpnII GATC 6 cut(s) 203, 376, 1105, 1128, 1164, 1191
DriI GACNNNNNGTC 1 cut(s) 934
EaeI YGGCCR 1 cut(s) 210
Eam1105I GACNNNNNGTC 1 cut(s) 934
Eco130I CCWWGG 2 cut(s) 565, 657
Eco147I AGGCCT 2 cut(s) 101, 184
Eco32I GATATC 1 cut(s) 810
Eco57I CTGAAG 2 cut(s) 471, 1031
Eco81I CCTNAGG 1 cut(s) 96
EcoRI GAATTC 1 cut(s) 500
EcoRII CCWGG 2 cut(s) 628, 1167
EcoRV GATATC 1 cut(s) 810
EcoT14I CCWWGG 2 cut(s) 565, 657
EcoT22I ATGCAT 1 cut(s) 775
ErhI CCWWGG 2 cut(s) 565, 657
FaeI CATG 6 cut(s) 84, 250, 280, 553, 697, 1004
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FaqI GGGAC 1 cut(s) 271
FatI CATG 6 cut(s) 80, 246, 276, 549, 693, 1000
FauI CCCGC 1 cut(s) 278
Fnu4HI GCNGC 3 cut(s) 318, 743, 870
FokI GGATG 6 cut(s) 339, 566, 583, 650, 782, 913
Fsp4HI GCNGC 3 cut(s) 318, 743, 870
FspBI CTAG 2 cut(s) 614, 993
GlaI GCGC 1 cut(s) 868
GluI GCNGC 3 cut(s) 318, 743, 870
GsaI CCCAGC 1 cut(s) 258
GsuI CTGGAG 2 cut(s) 201, 441
HaeIII GGCC 5 cut(s) 101, 184, 212, 448, 564
HapII CCGG 4 cut(s) 234, 683, 1132, 1152
HhaI GCGC 1 cut(s) 869
Hin1II CATG 6 cut(s) 84, 250, 280, 553, 697, 1004
Hin6I GCGC 1 cut(s) 867
HinP1I GCGC 1 cut(s) 867
HincII GTYRAC 1 cut(s) 939
HindII GTYRAC 1 cut(s) 939
HindIII AAGCTT 1 cut(s) 794
HinfI GANTC 8 cut(s) 259, 398, 537, 677, 935, 986, 1033, 1054
HpaII CCGG 4 cut(s) 234, 683, 1132, 1152
HphI GGTGA 2 cut(s) 673, 982
Hpy166II GTNNAC 3 cut(s) 699, 917, 939
Hpy188I TCNGA 6 cut(s) 264, 519, 1011, 1053, 1075, 1196
Hpy188III TCNNGA 7 cut(s) 410, 470, 674, 926, 993, 1121, 1132
Hpy8I GTNNAC 3 cut(s) 699, 917, 939
Hpy99I CGWCG 1 cut(s) 970
HpyAV CCTTC 3 cut(s) 283, 481, 1009
HpyCH4III ACNGT 3 cut(s) 585, 970, 1162
HpyCH4V TGCA 7 cut(s) 179, 320, 650, 722, 773, 1000, 1080
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 291, 326, 824
HpyF3I CTNAG 8 cut(s) 96, 261, 408, 483, 823, 890, 933, 1211
Hsp92II CATG 6 cut(s) 84, 250, 280, 553, 697, 1004
HspAI GCGC 1 cut(s) 867
Kpn2I TCCGGA 1 cut(s) 1131
Kzo9I GATC 6 cut(s) 203, 376, 1105, 1128, 1164, 1191
LmnI GCTCC 4 cut(s) 89, 460, 1134, 1177
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 5 cut(s) 329, 361, 561, 760, 782
MaeI CTAG 2 cut(s) 614, 993
MaeIII GTNAC 4 cut(s) 731, 926, 955, 1030
MalI GATC 6 cut(s) 205, 378, 1107, 1130, 1166, 1193
MboI GATC 6 cut(s) 203, 376, 1105, 1128, 1164, 1191
MboII GAAGA 4 cut(s) 316, 509, 1024, 1049
MfeI CAATTG 2 cut(s) 777, 860
MhlI GDGCHC 1 cut(s) 1120
MlsI TGGCCA 1 cut(s) 212
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 5 cut(s) 253, 546, 944, 995, 1027
Mox20I TGGCCA 1 cut(s) 212
Mph1103I ATGCAT 1 cut(s) 775
MroI TCCGGA 1 cut(s) 1131
MroXI GAANNNNTTC 2 cut(s) 921, 1023
MscI TGGCCA 1 cut(s) 212
MseI TTAA 6 cut(s) 39, 596, 798, 906, 1047, 1095
MslI CAYNNNNRTG 2 cut(s) 60, 362
Msp20I TGGCCA 1 cut(s) 212
MspI CCGG 4 cut(s) 234, 683, 1132, 1152
MspR9I CCNGG 4 cut(s) 235, 630, 683, 1169
MunI CAATTG 2 cut(s) 777, 860
MvaI CCWGG 2 cut(s) 630, 1169
MvnI CGCG 1 cut(s) 869
MwoI GCNNNNNNNGC 4 cut(s) 218, 291, 326, 824
NciI CCSGG 2 cut(s) 235, 683
NdeII GATC 6 cut(s) 203, 376, 1105, 1128, 1164, 1191
NlaIII CATG 6 cut(s) 84, 250, 280, 553, 697, 1004
NlaIV GGNNCC 1 cut(s) 1173
NmuCI GTSAC 3 cut(s) 731, 926, 1030
NsiI ATGCAT 1 cut(s) 775
NspI RCATGY 3 cut(s) 280, 697, 1004
OliI CACNNNNGTG 1 cut(s) 362
PaeI GCATGC 1 cut(s) 1004
PceI AGGCCT 2 cut(s) 101, 184
PciI ACATGT 1 cut(s) 276
PdmI GAANNNNTTC 2 cut(s) 921, 1023
PfeI GAWTC 3 cut(s) 398, 677, 1054
PflMI CCANNNNNTGG 1 cut(s) 443
PkrI GCNGC 3 cut(s) 319, 744, 871
PleI GAGTC 5 cut(s) 253, 545, 943, 994, 1027
PpsI GAGTC 5 cut(s) 253, 545, 943, 994, 1027
PscI ACATGT 1 cut(s) 276
Psp6I CCWGG 2 cut(s) 628, 1167
PspFI CCCAGC 1 cut(s) 254
PspGI CCWGG 2 cut(s) 628, 1167
PspN4I GGNNCC 1 cut(s) 1173
PspPI GGNCC 2 cut(s) 446, 562
PstNI CAGNNNCTG 1 cut(s) 227
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
RseI CAYNNNNRTG 2 cut(s) 60, 362
SaqAI TTAA 6 cut(s) 39, 596, 798, 906, 1047, 1095
SatI GCNGC 3 cut(s) 318, 743, 870
Sau3AI GATC 6 cut(s) 203, 376, 1105, 1128, 1164, 1191
Sau96I GGNCC 2 cut(s) 446, 562
SchI GAGTC 5 cut(s) 253, 546, 944, 995, 1027
ScrFI CCNGG 4 cut(s) 235, 630, 683, 1169
SduI GDGCHC 1 cut(s) 1120
SetI ASST 9 cut(s) 26, 135, 229, 457, 646, 663, 798, 824, 1149
SfaNI GCATC 5 cut(s) 329, 361, 561, 760, 782
SmiMI CAYNNNNRTG 2 cut(s) 60, 362
SmlI CTYRAG 2 cut(s) 391, 470
SmoI CTYRAG 2 cut(s) 391, 470
SphI GCATGC 1 cut(s) 1004
SseBI AGGCCT 2 cut(s) 101, 184
SsiI CCGC 8 cut(s) 43, 145, 285, 294, 458, 578, 742, 869
SspI AATATT 1 cut(s) 789
SspMI CTAG 2 cut(s) 614, 993
StuI AGGCCT 2 cut(s) 101, 184
StyD4I CCNGG 4 cut(s) 233, 628, 681, 1167
StyI CCWWGG 2 cut(s) 565, 657
TaaI ACNGT 3 cut(s) 585, 970, 1162
TaqI TCGA 1 cut(s) 1036
TauI GCSGC 2 cut(s) 745, 872
TfiI GAWTC 3 cut(s) 398, 677, 1054
Tru1I TTAA 6 cut(s) 39, 596, 798, 906, 1047, 1095
Tru9I TTAA 6 cut(s) 39, 596, 798, 906, 1047, 1095
TscAI CASTG 5 cut(s) 204, 379, 937, 1167, 1182
TseFI GTSAC 3 cut(s) 731, 926, 1030
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 3 cut(s) 731, 926, 1030
TspDTI ATGAA 2 cut(s) 538, 654
TspGWI ACGGA 2 cut(s) 494, 902
TspRI CASTG 5 cut(s) 204, 379, 937, 1167, 1182
Van91I CCANNNNNTGG 1 cut(s) 443
XapI RAATTY 5 cut(s) 165, 188, 335, 500, 1082
XbaI TCTAGA 1 cut(s) 992
XceI RCATGY 3 cut(s) 280, 697, 1004
XcmI CCANNNNNNNNNTGG 1 cut(s) 62
XmnI GAANNNNTTC 2 cut(s) 921, 1023
XspI CTAG 2 cut(s) 614, 993
Zsp2I ATGCAT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.