FvH4_7g20010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016924
Physical Location & Seq
Reverse (-)
16365623 .. 16366237
615 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20010.t1

Sequence Viewer

Length: 615 bp
ATGGAGTCCTACAACCCTCATTTCGAAGCTCCGGCACAAGACTTTGGTTTTGCATTTGAACAAGAGTTACAAGACAAAGAAGAAGACGCACTTTCTCTTTGTGATCTCCCACTCCATGAACACAGCGAAGAAGAAACTCCGGCAGCAGTTTTCGAGCCGGAAGACTTCTTCGAATTCCCCGTCGACCCTGTCTACGGCTACTACCCTATGGACATAGTCTTCTGCGGAAAATCCATCTGCTCTTCCTCAAAACCAAACAACAAACAACTCGGCTCCAGATCAGAATCCTTCAAACTAGGGCATTGTCCTAGTTCTCAATCTCACGTCATGCAACATCACAAGAGCCTGAAGTCCAAGTCTAGCAACTCTCATAAGCATTTGATCGGGCTGGTGAAGTACCACCAGCAGGAGATGGACTTGAACGAGATAAGAAAGCGGCAAGGGAGACGAGCTCCGGTGGCGATGTTTCCGGTGAACGGCGGGGAGAAACCGGAAGTGAAGAGCGAGGGGAAAGGGCAATCGGGTCACTCGGGTGTGATGAGACCGCTAAGGTGTCGGTCACACTTGTTAAACGCGTTGGCTAAGGCGGCTCTTGGTTGCATACCTCATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.86

Weight (kDa)

6.35

Isoelectric Point (pI)

63.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016924)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g20010
malus_domestica MD01G1111500.v1.1 MD07G1177700.v1.1
prunus_persica Prupe.2G217100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0363961
rosa_laevigata RLG00000027532
rosa_multiflora Rmu_ssc0000167.1_g000035
rosa_roxburghii Rroxscaffold_4G00292800
rosa_rugosa Rorug01G0311700
rosa_samantha Rh1AG319500 Rh1BG282600 Rh1CG299000 Rh1DG314000
rosa_wichuraiana Rw1G028320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 183, 192
AccII CGCG 1 cut(s) 575
AciI CCGC 5 cut(s) 225, 436, 480, 545, 587
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 3 cut(s) 194, 406, 476
AflIII ACRYGT 1 cut(s) 573
AgsI TTSAA 3 cut(s) 59, 292, 421
AjiI CACGTC 1 cut(s) 325
AleI CACNNNNGTG 1 cut(s) 531
AluBI AGCT 2 cut(s) 29, 452
AluI AGCT 2 cut(s) 29, 452
Alw21I GWGCWC 1 cut(s) 454
Alw26I GTCTC 2 cut(s) 439, 535
Ama87I CYCGRG 1 cut(s) 529
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 173
ArsI GACNNNNNNTTYG 4 cut(s) 32, 64, 165, 197
AsuHPI GGTGA 2 cut(s) 403, 484
AsuII TTCGAA 2 cut(s) 24, 171
AvaI CYCGRG 1 cut(s) 529
BanII GRGCYC 1 cut(s) 454
BbsI GAAGAC 3 cut(s) 90, 168, 211
Bbv12I GWGCWC 1 cut(s) 454
BbvI GCAGC 1 cut(s) 155
BccI CCATC 2 cut(s) 242, 406
BceAI ACGGC 2 cut(s) 211, 493
BcoDI GTCTC 2 cut(s) 439, 535
BfaI CTAG 3 cut(s) 296, 309, 360
BisI GCNGC 3 cut(s) 144, 437, 588
BlsI GCNGC 3 cut(s) 145, 438, 589
BmeT110I CYCGRG 1 cut(s) 529
BmgBI CACGTC 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 274
BpiI GAAGAC 3 cut(s) 90, 168, 211
BplI GAGNNNNNCTC 2 cut(s) 436, 468
BpmI CTGGAG 1 cut(s) 259
Bpu10I CCTNAGC 2 cut(s) 548, 582
Bpu14I TTCGAA 2 cut(s) 24, 171
BsaBI GATNNNNATC 1 cut(s) 283
BsaI GGTCTC 1 cut(s) 535
BsaWI WCCGGW 3 cut(s) 454, 469, 490
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 406, 476
Bse8I GATNNNNATC 1 cut(s) 283
BseJI GATNNNNATC 1 cut(s) 283
BseLI CCNNNNNNNGG 3 cut(s) 194, 406, 476
BseXI GCAGC 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 575
BsiHKAI GWGCWC 1 cut(s) 454
BsiHKCI CYCGRG 1 cut(s) 529
BsiSI CCGG 6 cut(s) 32, 140, 158, 455, 470, 491
BslI CCNNNNNNNGG 3 cut(s) 194, 406, 476
BsmAI GTCTC 2 cut(s) 439, 535
BsmBI CGTCTC 1 cut(s) 439
Bso31I GGTCTC 1 cut(s) 535
BsoBI CYCGRG 1 cut(s) 529
Bsp119I TTCGAA 2 cut(s) 24, 171
Bsp1286I GDGCHC 1 cut(s) 454
Bsp143I GATC 3 cut(s) 103, 278, 381
BspACI CCGC 5 cut(s) 225, 436, 480, 545, 587
BspFNI CGCG 1 cut(s) 575
BspLI GGNNCC 1 cut(s) 274
BspQI GCTCTTC 2 cut(s) 247, 494
BspT104I TTCGAA 2 cut(s) 24, 171
BspTNI GGTCTC 1 cut(s) 535
BssMI GATC 3 cut(s) 103, 278, 381
Bst6I CTCTTC 2 cut(s) 247, 494
BstBI TTCGAA 2 cut(s) 24, 171
BstDEI CTNAG 2 cut(s) 548, 582
BstFNI CGCG 1 cut(s) 575
BstKTI GATC 3 cut(s) 106, 281, 384
BstMAI GTCTC 2 cut(s) 439, 535
BstMBI GATC 3 cut(s) 103, 278, 381
BstMWI GCNNNNNNNGC 2 cut(s) 458, 587
BstUI CGCG 1 cut(s) 575
BstV1I GCAGC 1 cut(s) 155
BstV2I GAAGAC 3 cut(s) 90, 168, 211
BtgZI GCGATG 1 cut(s) 476
BtrI CACGTC 1 cut(s) 325
CseI GACGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 397
CviAII CATG 3 cut(s) 116, 328, 608
CviJI RGCY 9 cut(s) 29, 157, 198, 273, 345, 388, 452, 581, 590
CviKI_1 RGCY 9 cut(s) 29, 157, 198, 273, 345, 388, 452, 581, 590
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 2 cut(s) 548, 582
DpnI GATC 3 cut(s) 105, 280, 383
DpnII GATC 3 cut(s) 103, 278, 381
Eam1104I CTCTTC 2 cut(s) 247, 494
EarI CTCTTC 2 cut(s) 247, 494
Ecl136II GAGCTC 1 cut(s) 452
Eco24I GRGCYC 1 cut(s) 454
Eco31I GGTCTC 1 cut(s) 535
Eco53kI GAGCTC 1 cut(s) 452
Eco57I CTGAAG 1 cut(s) 368
Eco88I CYCGRG 1 cut(s) 529
EcoICRI GAGCTC 1 cut(s) 452
EcoRI GAATTC 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 454
Esp3I CGTCTC 1 cut(s) 439
FaeI CATG 3 cut(s) 119, 331, 611
FaiI YATR 7 cut(s) 117, 209, 215, 329, 372, 602, 609
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FatI CATG 3 cut(s) 115, 327, 607
FauI CCCGC 1 cut(s) 473
FblI GTMKAC 2 cut(s) 183, 192
Fnu4HI GCNGC 3 cut(s) 144, 437, 588
FriOI GRGCYC 1 cut(s) 454
Fsp4HI GCNGC 3 cut(s) 144, 437, 588
FspBI CTAG 3 cut(s) 296, 309, 360
GluI GCNGC 3 cut(s) 144, 437, 588
GsuI CTGGAG 1 cut(s) 259
HapII CCGG 6 cut(s) 32, 140, 158, 455, 470, 491
HgaI GACGC 1 cut(s) 95
Hin1II CATG 3 cut(s) 119, 331, 611
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 2 cut(s) 5, 284
HpaII CCGG 6 cut(s) 32, 140, 158, 455, 470, 491
HphI GGTGA 2 cut(s) 403, 484
Hpy166II GTNNAC 3 cut(s) 184, 193, 475
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 3 cut(s) 184, 193, 475
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 298
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 3 cut(s) 53, 331, 600
HpyF10VI GCNNNNNNNGC 2 cut(s) 458, 587
HpyF3I CTNAG 2 cut(s) 548, 582
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 3 cut(s) 119, 331, 611
Kzo9I GATC 3 cut(s) 103, 278, 381
LguI GCTCTTC 2 cut(s) 247, 494
LmnI GCTCC 3 cut(s) 34, 278, 457
Lsp1109I GCAGC 1 cut(s) 155
MaeI CTAG 3 cut(s) 296, 309, 360
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 3 cut(s) 66, 524, 558
MalI GATC 3 cut(s) 105, 280, 383
MboI GATC 3 cut(s) 103, 278, 381
MboII GAAGA 9 cut(s) 92, 95, 140, 143, 160, 173, 211, 234, 511
MhlI GDGCHC 1 cut(s) 454
MluCI AATT 1 cut(s) 173
MluI ACGCGT 1 cut(s) 573
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 4 cut(s) 27, 256, 499, 615
MseI TTAA 1 cut(s) 569
MslI CAYNNNNRTG 1 cut(s) 531
MspI CCGG 6 cut(s) 32, 140, 158, 455, 470, 491
MvnI CGCG 1 cut(s) 575
MwoI GCNNNNNNNGC 2 cut(s) 458, 587
NdeII GATC 3 cut(s) 103, 278, 381
NlaIII CATG 3 cut(s) 119, 331, 611
NlaIV GGNNCC 1 cut(s) 274
NmeAIII GCCGAG 1 cut(s) 249
NmuCI GTSAC 2 cut(s) 524, 558
NspV TTCGAA 2 cut(s) 24, 171
OliI CACNNNNGTG 1 cut(s) 531
PciSI GCTCTTC 2 cut(s) 247, 494
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 1 cut(s) 284
PflFI GACNNNGTC 2 cut(s) 188, 215
PkrI GCNGC 3 cut(s) 145, 438, 589
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp124BI GAGCTC 1 cut(s) 454
PspN4I GGNNCC 1 cut(s) 274
PsrI GAACNNNNNNTAC 2 cut(s) 51, 83
PsyI GACNNNGTC 2 cut(s) 188, 215
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
RseI CAYNNNNRTG 1 cut(s) 531
SacI GAGCTC 1 cut(s) 454
SalI GTCGAC 1 cut(s) 182
SapI GCTCTTC 2 cut(s) 247, 494
SaqAI TTAA 1 cut(s) 569
SatI GCNGC 3 cut(s) 144, 437, 588
Sau3AI GATC 3 cut(s) 103, 278, 381
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 1 cut(s) 454
SetI ASST 5 cut(s) 31, 327, 454, 554, 607
SfuI TTCGAA 2 cut(s) 24, 171
SmiMI CAYNNNNRTG 1 cut(s) 531
Sse9I AATT 1 cut(s) 173
SsiI CCGC 5 cut(s) 225, 436, 480, 545, 587
SspMI CTAG 3 cut(s) 296, 309, 360
SstI GAGCTC 1 cut(s) 454
TaiI ACGT 1 cut(s) 327
TaqI TCGA 4 cut(s) 24, 153, 171, 183
TaqII GACCGA 1 cut(s) 546
TasI AATT 1 cut(s) 173
TauI GCSGC 2 cut(s) 439, 590
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TseFI GTSAC 2 cut(s) 524, 558
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 2 cut(s) 524, 558
TspDTI ATGAA 1 cut(s) 132
Tth111I GACNNNGTC 2 cut(s) 188, 215
XapI RAATTY 1 cut(s) 173
XmiI GTMKAC 2 cut(s) 183, 192
XspI CTAG 3 cut(s) 296, 309, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.