Rh1DG314000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0016924
Physical Location & Seq
Reverse (-)
54080363 .. 54080959
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG314000.1

Sequence Viewer

Length: 597 bp
ATGGAGTCTCACAACCCTCATTTTGAAGCTCCGGTACAAGACTTTGGTTTTGCATTTGATCAAGACCATGAAGAAGACGCACTTTCTCTTTGTGATCTCCCACTCCATGAACACAGCGAAGAAGAAAGCCCGGCCTTAGTTTCCGAGCCGGAAGACTTCTTCGAATTCGCTGTCGACCCTGTCTATGGCTACTACCCAATGGACATAGTCTTCTGCGGAAAATCCATCCCTTGCTCGAAGCCAATGAACAAACAATTTGGCTCCAGATCCGAGTCCTTCAAACTAGGACATTGTCCCAGTTCTCAATCTCATCACGTGATTCAAGAACACAAGAGCCTGAAATCCAAGTCTAGCAACTCACGTAAGCATTTGATAGGGCTGGTGAAGTACCACCAGCAGGAGATGGACTTGAACGAGATAAGAAAGCGGCAAGGCAGGCGAGCTCCTGTGGCGATGTTTCCGGTGAACGGCGGGGAGAAACCGGAAGTGAAGAGTGAAGGGAAAGGGCAGTCGGGTGTGATGAGACCGCTGAGGTGTCGGTCACACTTGTTAAGCGCGTTGGCTAAGGCGGCTCTGGGTTGCATACCTCATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.22

Weight (kDa)

6.34

Isoelectric Point (pI)

63.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016924)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g20010
malus_domestica MD01G1111500.v1.1 MD07G1177700.v1.1
prunus_persica Prupe.2G217100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0363961
rosa_laevigata RLG00000027532
rosa_multiflora Rmu_ssc0000167.1_g000035
rosa_roxburghii Rroxscaffold_4G00292800
rosa_rugosa Rorug01G0311700
rosa_samantha Rh1AG319500 Rh1BG282600 Rh1CG299000 Rh1DG314000
rosa_wichuraiana Rw1G028320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 174
AccII CGCG 1 cut(s) 557
AciI CCGC 5 cut(s) 216, 427, 471, 527, 569
AclWI GGATC 1 cut(s) 261
AcsI RAATTY 1 cut(s) 164
AcvI CACGTG 1 cut(s) 316
AfaI GTAC 2 cut(s) 36, 389
AfiI CCNNNNNNNGG 3 cut(s) 185, 397, 467
AgsI TTSAA 4 cut(s) 26, 280, 323, 412
AluBI AGCT 2 cut(s) 29, 443
AluI AGCT 2 cut(s) 29, 443
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 2 cut(s) 12, 517
AlwI GGATC 1 cut(s) 261
AoxI GGCC 1 cut(s) 132
ApoI RAATTY 1 cut(s) 164
ArsI GACNNNNNNTTYG 4 cut(s) 32, 64, 156, 188
AspLEI GCGC 1 cut(s) 557
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 394, 475
AsuII TTCGAA 1 cut(s) 162
BanII GRGCYC 1 cut(s) 445
BarI GAAGNNNNNNTAC 2 cut(s) 18, 50
BbrPI CACGTG 1 cut(s) 316
BbsI GAAGAC 3 cut(s) 81, 159, 202
Bbv12I GWGCWC 1 cut(s) 445
BbvCI CCTCAGC 1 cut(s) 530
BccI CCATC 2 cut(s) 233, 397
BceAI ACGGC 1 cut(s) 484
BclI TGATCA 1 cut(s) 58
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 2 cut(s) 12, 517
BfaI CTAG 2 cut(s) 284, 351
BisI GCNGC 2 cut(s) 428, 570
BlsI GCNGC 2 cut(s) 429, 571
Bme1390I CCNGG 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 131
BmrI ACTGGG 1 cut(s) 291
BmuI ACTGGG 1 cut(s) 291
BpiI GAAGAC 3 cut(s) 81, 159, 202
BpmI CTGGAG 1 cut(s) 247
Bpu10I CCTNAGC 2 cut(s) 530, 564
Bpu14I TTCGAA 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 131
BsaAI YACGTR 2 cut(s) 316, 362
BsaI GGTCTC 1 cut(s) 517
BsaWI WCCGGW 3 cut(s) 31, 460, 481
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 397, 467
Bse1I ACTGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 3 cut(s) 185, 397, 467
BseMII CTCAG 1 cut(s) 521
BseNI ACTGG 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 557
BshFI GGCC 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 445
BsiSI CCGG 5 cut(s) 32, 131, 149, 461, 482
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 3 cut(s) 185, 397, 467
BsmAI GTCTC 2 cut(s) 12, 517
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 1 cut(s) 134
Bso31I GGTCTC 1 cut(s) 517
Bsp119I TTCGAA 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 445
Bsp143I GATC 3 cut(s) 58, 94, 266
BspACI CCGC 5 cut(s) 216, 427, 471, 527, 569
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 522
BspFNI CGCG 1 cut(s) 557
BspLI GGNNCC 1 cut(s) 262
BspPI GGATC 1 cut(s) 261
BspT104I TTCGAA 1 cut(s) 162
BspTNI GGTCTC 1 cut(s) 517
BsrI ACTGG 1 cut(s) 297
BssMI GATC 3 cut(s) 58, 94, 266
Bst6I CTCTTC 1 cut(s) 485
BstBAI YACGTR 2 cut(s) 316, 362
BstBI TTCGAA 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 437, 441
BstDEI CTNAG 3 cut(s) 136, 530, 564
BstF5I GGATG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 557
BstHHI GCGC 1 cut(s) 557
BstKTI GATC 3 cut(s) 61, 97, 269
BstMAI GTCTC 2 cut(s) 12, 517
BstMBI GATC 3 cut(s) 58, 94, 266
BstMWI GCNNNNNNNGC 3 cut(s) 436, 449, 569
BstSCI CCNGG 1 cut(s) 129
BstUI CGCG 1 cut(s) 557
BstV2I GAAGAC 3 cut(s) 81, 159, 202
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BsuRI GGCC 1 cut(s) 134
BtgZI GCGATG 1 cut(s) 467
BtsCI GGATG 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 437, 441
CfoI GCGC 1 cut(s) 557
CseI GACGC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 35, 388
CviAII CATG 3 cut(s) 68, 107, 590
CviQI GTAC 2 cut(s) 35, 388
DdeI CTNAG 3 cut(s) 136, 530, 564
DpnI GATC 3 cut(s) 60, 96, 268
DpnII GATC 3 cut(s) 58, 94, 266
Eam1104I CTCTTC 1 cut(s) 485
EarI CTCTTC 1 cut(s) 485
Ecl136II GAGCTC 1 cut(s) 443
Eco24I GRGCYC 1 cut(s) 445
Eco31I GGTCTC 1 cut(s) 517
Eco53kI GAGCTC 1 cut(s) 443
Eco72I CACGTG 1 cut(s) 316
EcoICRI GAGCTC 1 cut(s) 443
EcoRI GAATTC 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 445
FaeI CATG 3 cut(s) 71, 110, 593
FaiI YATR 6 cut(s) 69, 108, 186, 206, 584, 591
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FaqI GGGAC 1 cut(s) 279
FatI CATG 3 cut(s) 67, 106, 589
FauI CCCGC 1 cut(s) 464
FbaI TGATCA 1 cut(s) 58
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 2 cut(s) 428, 570
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 445
Fsp4HI GCNGC 2 cut(s) 428, 570
FspBI CTAG 2 cut(s) 284, 351
GlaI GCGC 1 cut(s) 556
GluI GCNGC 2 cut(s) 428, 570
GsuI CTGGAG 1 cut(s) 247
HaeIII GGCC 1 cut(s) 134
HapII CCGG 5 cut(s) 32, 131, 149, 461, 482
HgaI GACGC 1 cut(s) 86
HhaI GCGC 1 cut(s) 557
Hin1II CATG 3 cut(s) 71, 110, 593
Hin6I GCGC 1 cut(s) 555
HinP1I GCGC 1 cut(s) 555
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 3 cut(s) 5, 272, 319
HpaII CCGG 5 cut(s) 32, 131, 149, 461, 482
HphI GGTGA 2 cut(s) 394, 475
Hpy166II GTNNAC 2 cut(s) 175, 466
Hpy188I TCNGA 2 cut(s) 145, 271
Hpy188III TCNNGA 3 cut(s) 62, 264, 323
Hpy8I GTNNAC 2 cut(s) 175, 466
HpyAV CCTTC 2 cut(s) 286, 491
HpyCH4IV ACGT 2 cut(s) 315, 361
HpyCH4V TGCA 2 cut(s) 53, 582
HpyF10VI GCNNNNNNNGC 3 cut(s) 436, 449, 569
HpyF3I CTNAG 3 cut(s) 136, 530, 564
HpySE526I ACGT 2 cut(s) 315, 361
Hsp92II CATG 3 cut(s) 71, 110, 593
HspAI GCGC 1 cut(s) 555
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 3 cut(s) 58, 94, 266
LmnI GCTCC 3 cut(s) 34, 266, 448
MaeI CTAG 2 cut(s) 284, 351
MaeII ACGT 2 cut(s) 315, 361
MaeIII GTNAC 1 cut(s) 540
MalI GATC 3 cut(s) 60, 96, 268
MboI GATC 3 cut(s) 58, 94, 266
MboII GAAGA 8 cut(s) 83, 86, 131, 134, 151, 164, 202, 502
MflI RGATCY 1 cut(s) 266
MhlI GDGCHC 1 cut(s) 445
MluCI AATT 2 cut(s) 164, 254
MlyI GAGTC 2 cut(s) 14, 281
MnlI CCTC 3 cut(s) 27, 525, 597
MseI TTAA 1 cut(s) 551
MspA1I CMGCKG 1 cut(s) 529
MspI CCGG 5 cut(s) 32, 131, 149, 461, 482
MspR9I CCNGG 1 cut(s) 131
MvnI CGCG 1 cut(s) 557
MwoI GCNNNNNNNGC 3 cut(s) 436, 449, 569
NciI CCSGG 1 cut(s) 131
NdeII GATC 3 cut(s) 58, 94, 266
NlaIII CATG 3 cut(s) 71, 110, 593
NlaIV GGNNCC 1 cut(s) 262
NmuCI GTSAC 1 cut(s) 540
NspV TTCGAA 1 cut(s) 162
PfeI GAWTC 1 cut(s) 319
PflFI GACNNNGTC 3 cut(s) 179, 206, 291
PkrI GCNGC 2 cut(s) 429, 571
PleI GAGTC 2 cut(s) 13, 280
PmaCI CACGTG 1 cut(s) 316
PmlI CACGTG 1 cut(s) 316
PpsI GAGTC 2 cut(s) 13, 280
Ppu21I YACGTR 2 cut(s) 316, 362
Psp124BI GAGCTC 1 cut(s) 445
PspCI CACGTG 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 262
PsuI RGATCY 1 cut(s) 266
PsyI GACNNNGTC 3 cut(s) 179, 206, 291
RsaI GTAC 2 cut(s) 36, 389
RsaNI GTAC 2 cut(s) 35, 388
SacI GAGCTC 1 cut(s) 445
SalI GTCGAC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 551
SatI GCNGC 2 cut(s) 428, 570
Sau3AI GATC 3 cut(s) 58, 94, 266
SchI GAGTC 2 cut(s) 14, 281
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 445
SetI ASST 6 cut(s) 31, 318, 364, 445, 536, 589
SfuI TTCGAA 1 cut(s) 162
Sse9I AATT 2 cut(s) 164, 254
SsiI CCGC 5 cut(s) 216, 427, 471, 527, 569
SspMI CTAG 2 cut(s) 284, 351
SstI GAGCTC 1 cut(s) 445
StyD4I CCNGG 1 cut(s) 129
TaiI ACGT 2 cut(s) 318, 364
TaqI TCGA 3 cut(s) 162, 174, 236
TaqII GACCGA 1 cut(s) 528
TasI AATT 2 cut(s) 164, 254
TauI GCSGC 2 cut(s) 430, 572
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TseFI GTSAC 1 cut(s) 540
Tsp45I GTSAC 1 cut(s) 540
TspDTI ATGAA 3 cut(s) 84, 123, 260
Tth111I GACNNNGTC 3 cut(s) 179, 206, 291
XapI RAATTY 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 2 cut(s) 284, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.