Rorug01G0311700

Assembly, mitochondrial proton-transport ATP synth complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012541
Physical Location & Seq
Reverse (-)
42875383 .. 42878014
2632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0311700.1

Sequence Viewer

Length: 1533 bp
ATGGATTTTGCTTCCGTGGCAGTAGCATTGAGTTTAGCGTTAGTTTTAGCTGTAGTTGTGGTTAGACACCATGCCCAAAGATTGAGTGACAAGAACAAGAGATACCATCCTGTTGCCGGAACTGTCGTGCACCAACTTATCAACTTCCCTAGGCTACACCATTACATGACTGAGCTTGCAGGCAAGTATTACACTTACAGGATGCTCGACTTGTTCAAAGGGGCGGTTTACACAGTAGATCCTGCAAATGTTGAATATGTGCTCAAAACAAACTTCGCTAATTATGGCAAGGGGTCGTATATGAACAACATTTTGTCAGATGGACTAGGCGATGGGATCTTCTCAGTGGATGGGCAAAAATGGCTACATCAGAGGAAGTTGTTGAGCGCTGAATTCTCAACAAAAGTATTGAGAGACTTCAGTCGTGCAGTTTTCAAAACCAATGCAATTAAACTTGCTGGCATAATTCATGCAGCTGCAACCAGCAGCAACCAAGCAATAGAGATCCAAGATTTGTTTATGAAATCAACGTTAGATTCAATCATCAAGATTCTACTTGGTATCGAACTAGACAGCATGAGTGGAAAAGATGAAGAAGGTAACCGGTTTTCCCATGCTTTTGAATCGGGGCAAGAAGCTACCTTGTATCGGTTGATTGATATTTTCTGGAAGATCAAACGCTTCTTAAACATCGGTAAGGAAGCAGAGCTAAAGAAAAACATCAAAGAGATCGATCGATTTTTGTATAAGTTAATCAATAGCAAGATTGAAACTATCCAGAGTCCAGAAGATGATAACATATATTGGCAGCTGAAGAAAAGAGACTTGGTTTCAAGGAGTTTGGAAATGAAAGATAGTGATCCAAAGTACTTGAGAGACATGGTCCTCTGTGTTACTGCCGCCGGACAAGACACGACAGCTAGCTCTCTTTCATGGTTTGTTTATATGATGTGCAAGCATCTTCACATACAAGAAAAGATTGCACAGGAAGTTAGAGAAGTAATAAATTTGAAAGATAATCCAAGTGTTGATGAGCTTGCAGCAAGCCTTGATCAAGAAGCCCTTAACAATATGCAATATCTCCATGCCGCTTTGAGTGAAACAATCAGACTCTATCCTCCAATTCCAATGAATGCAAGGGTGTGTTTTTCTGATGATACCTGGCCAGATGGATTTAGTGTCAAAAAGGGAGACGTGGTGGTATATCAACATTATGCAATGGGAAGGATGAAATCTCTATGGGGAGATGATGCAGAAGAGTTTCGGCCAGAGAGATGGCTCGACAAAAATGGCATTTTCCAGGATGAAAGCCCTTACAAATTCACATCCTTCAGTGCCGGTCCAAGAATTTGTCTAGGAAAGGAACATGCCTATACGCAAATGAAAATCATTTCTGCTGTGCTTTTAAGCAGCTATATATTCAAGCTAGCTTATGAGGAAAAAATTGTCACTTACAAGACCATGATCTCCCTACCAATTGATGGAGGTCTCTATGTGAAGGCCTCCCCAAGATTATGGCATGCGAGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM70

Protein Analysis

510

Amino Acids

58.24

Weight (kDa)

8.34

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 45 - 491 1.9e-72 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35790
fragaria_vesca FvH4_7g20020
malus_domestica MD01G1111700.v1.1 MD07G1177900.v1.1
prunus_persica Prupe.2G217200_v2.0.a1 Prupe.2G217200_v2.0.a1
pyrus_communis pycom01g13890 pycom07g17170 pycom07g17180
rosa_chinensis RchiOBHm_Chr1g0363981
rosa_laevigata RLG00000027531
rosa_multiflora Rmu_sc0001607.1_g000014 Rmu_ssc0000167.1_g000025
rosa_roxburghii Rroxscaffold_4G00292790
rosa_rugosa Rorug01G0311700 Rorug01G0311800
rosa_samantha Rh1BG282700 Rh1DG314100
rosa_wichuraiana Rw1G028330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1481
AciI CCGC 3 cut(s) 224, 900, 1089
AclI AACGTT 1 cut(s) 530
AclWI GGATC 4 cut(s) 233, 344, 499, 854
AcoI YGGCCR 2 cut(s) 1163, 1265
AcsI RAATTY 4 cut(s) 392, 1006, 1319, 1347
AcuI CTGAAG 3 cut(s) 403, 833, 1315
AfaI GTAC 1 cut(s) 869
AfeI AGCGCT 1 cut(s) 388
AfiI CCNNNNNNNGG 3 cut(s) 116, 648, 1481
AgeI ACCGGT 1 cut(s) 603
AgsI TTSAA 9 cut(s) 217, 254, 436, 540, 623, 770, 834, 1012, 1423
AjiI CACGTC 1 cut(s) 1195
AjnI CCWGG 2 cut(s) 1160, 1299
AjuI GAANNNNNNNTTGG 2 cut(s) 809, 841
Alw21I GWGCWC 2 cut(s) 132, 264
Alw26I GTCTC 6 cut(s) 408, 816, 870, 1185, 1493, 1519
Alw44I GTGCAC 1 cut(s) 128
AlwI GGATC 4 cut(s) 233, 344, 499, 854
Aor51HI AGCGCT 1 cut(s) 388
AoxI GGCC 3 cut(s) 1163, 1265, 1500
ApaLI GTGCAC 1 cut(s) 128
ApeKI GCWGC 6 cut(s) 473, 476, 486, 808, 1040, 1410
ApoI RAATTY 4 cut(s) 392, 1006, 1319, 1347
AsiGI ACCGGT 1 cut(s) 603
Asp700I GAANNNNTTC 1 cut(s) 1260
AspA2I CCTAGG 1 cut(s) 149
AspLEI GCGC 1 cut(s) 389
AspS9I GGNCC 2 cut(s) 883, 1340
AsuNHI GCTAGC 2 cut(s) 920, 1426
AvaII GGWCC 2 cut(s) 883, 1340
AvrII CCTAGG 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 132
BalI TGGCCA 1 cut(s) 1165
Bbv12I GWGCWC 2 cut(s) 132, 264
BbvI GCAGC 6 cut(s) 463, 485, 498, 820, 1052, 1422
BccI CCATC 7 cut(s) 114, 314, 326, 344, 1163, 1269, 1475
BciT130I CCWGG 2 cut(s) 1162, 1301
BclI TGATCA 1 cut(s) 1051
BcoDI GTCTC 6 cut(s) 408, 816, 870, 1185, 1493, 1519
BfaI CTAG 6 cut(s) 150, 326, 569, 921, 1355, 1427
BfmI CTRYAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 390
BisI GCNGC 8 cut(s) 474, 477, 487, 809, 900, 1041, 1089, 1411
BlnI CCTAGG 1 cut(s) 149
BlsI GCNGC 8 cut(s) 475, 478, 488, 810, 901, 1042, 1090, 1412
BmcAI AGTACT 1 cut(s) 869
Bme1390I CCNGG 2 cut(s) 1162, 1301
Bme18I GGWCC 2 cut(s) 883, 1340
BmgBI CACGTC 1 cut(s) 1195
BmgT120I GGNCC 2 cut(s) 883, 1340
BmrFI CCNGG 2 cut(s) 1162, 1301
BmsI GCATC 3 cut(s) 192, 967, 1240
BmtI GCTAGC 2 cut(s) 924, 1430
BoxI GACNNNNGTC 1 cut(s) 420
BpuEI CTTGAG 1 cut(s) 892
Bsa29I ATCGAT 2 cut(s) 732, 736
BsaBI GATNNNNATC 1 cut(s) 858
BsaI GGTCTC 2 cut(s) 1493, 1519
BsaJI CCNNGG 2 cut(s) 15, 149
BsaWI WCCGGW 1 cut(s) 603
BsaXI ACNNNNNCTCC 2 cut(s) 1182, 1212
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 648, 1481
Bse118I RCCGGY 2 cut(s) 603, 1337
Bse3DI GCAATG 1 cut(s) 1224
Bse8I GATNNNNATC 1 cut(s) 858
BseBI CCWGG 2 cut(s) 1162, 1301
BseCI ATCGAT 2 cut(s) 732, 736
BseDI CCNNGG 2 cut(s) 15, 149
BseGI GGATG 6 cut(s) 106, 207, 355, 1233, 1309, 1325
BseJI GATNNNNATC 1 cut(s) 858
BseLI CCNNNNNNNGG 3 cut(s) 116, 648, 1481
BseMI GCAATG 1 cut(s) 1224
BseMII CTCAG 2 cut(s) 162, 357
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 6 cut(s) 463, 485, 498, 820, 1052, 1422
BsgI GTGCAG 1 cut(s) 447
Bsh1285I CGRYCG 1 cut(s) 736
BshFI GGCC 3 cut(s) 1165, 1267, 1502
BshTI ACCGGT 1 cut(s) 603
BshVI ATCGAT 2 cut(s) 732, 736
BsiEI CGRYCG 1 cut(s) 736
BsiHKAI GWGCWC 2 cut(s) 132, 264
BsiSI CCGG 4 cut(s) 117, 604, 903, 1338
BslI CCNNNNNNNGG 3 cut(s) 116, 648, 1481
BsmAI GTCTC 6 cut(s) 408, 816, 870, 1185, 1493, 1519
BsmBI CGTCTC 1 cut(s) 1185
BsmI GAATGC 1 cut(s) 1138
BsnI GGCC 3 cut(s) 1165, 1267, 1502
Bso31I GGTCTC 2 cut(s) 1493, 1519
Bsp1286I GDGCHC 2 cut(s) 132, 264
Bsp143I GATC 9 cut(s) 238, 336, 504, 672, 729, 733, 859, 1051, 1464
BspACI CCGC 3 cut(s) 224, 900, 1089
BspANI GGCC 3 cut(s) 1165, 1267, 1502
BspCNI CTCAG 2 cut(s) 163, 356
BspDI ATCGAT 2 cut(s) 732, 736
BspOI GCTAGC 2 cut(s) 924, 1430
BspPI GGATC 4 cut(s) 233, 344, 499, 854
BspTNI GGTCTC 2 cut(s) 1493, 1519
BsrDI GCAATG 1 cut(s) 1224
BsrFI RCCGGY 2 cut(s) 603, 1337
BssAI RCCGGY 2 cut(s) 603, 1337
BssECI CCNNGG 2 cut(s) 15, 149
BssMI GATC 9 cut(s) 238, 336, 504, 672, 729, 733, 859, 1051, 1464
BssT1I CCWWGG 1 cut(s) 149
Bst2UI CCWGG 2 cut(s) 1162, 1301
Bst4CI ACNGT 2 cut(s) 124, 235
Bst6I CTCTTC 1 cut(s) 1251
BstC8I GCNNGC 9 cut(s) 177, 181, 460, 922, 956, 1038, 1045, 1428, 1521
BstDEI CTNAG 2 cut(s) 171, 343
BstDSI CCRYGG 1 cut(s) 15
BstEII GGTNACC 1 cut(s) 599
BstF5I GGATG 6 cut(s) 106, 207, 355, 1233, 1309, 1325
BstH2I RGCGCY 1 cut(s) 390
BstHHI GCGC 1 cut(s) 389
BstKTI GATC 9 cut(s) 241, 339, 507, 675, 732, 736, 862, 1054, 1467
BstMAI GTCTC 6 cut(s) 408, 816, 870, 1185, 1493, 1519
BstMBI GATC 9 cut(s) 238, 336, 504, 672, 729, 733, 859, 1051, 1464
BstMCI CGRYCG 1 cut(s) 736
BstMWI GCNNNNNNNGC 2 cut(s) 17, 361
BstNI CCWGG 2 cut(s) 1162, 1301
BstNSI RCATGY 2 cut(s) 1370, 1523
BstPAI GACNNNNGTC 1 cut(s) 420
BstPI GGTNACC 1 cut(s) 599
BstSCI CCNGG 2 cut(s) 1160, 1299
BstSFI CTRYAG 1 cut(s) 51
BstSLI GKGCMC 1 cut(s) 132
BstV1I GCAGC 6 cut(s) 463, 485, 498, 820, 1052, 1422
BstX2I RGATCY 3 cut(s) 238, 336, 504
BstXI CCANNNNNNTGG 2 cut(s) 1275, 1515
BstYI RGATCY 3 cut(s) 238, 336, 504
Bsu15I ATCGAT 2 cut(s) 732, 736
BsuRI GGCC 3 cut(s) 1165, 1267, 1502
BsuTUI ATCGAT 2 cut(s) 732, 736
BtgI CCRYGG 1 cut(s) 15
BtgZI GCGATG 1 cut(s) 345
BtrI CACGTC 1 cut(s) 1195
BtsCI GGATG 6 cut(s) 106, 207, 355, 1233, 1309, 1325
BtsIMutI CAGTG 2 cut(s) 351, 1339
Cac8I GCNNGC 9 cut(s) 177, 181, 460, 922, 956, 1038, 1045, 1428, 1521
CfoI GCGC 1 cut(s) 389
Cfr10I RCCGGY 2 cut(s) 603, 1337
Cfr13I GGNCC 2 cut(s) 883, 1340
ClaI ATCGAT 2 cut(s) 732, 736
Csp6I GTAC 1 cut(s) 868
CspAI ACCGGT 1 cut(s) 603
CviQI GTAC 1 cut(s) 868
DdeI CTNAG 2 cut(s) 171, 343
DpnI GATC 9 cut(s) 240, 338, 506, 674, 731, 735, 861, 1053, 1466
DpnII GATC 9 cut(s) 238, 336, 504, 672, 729, 733, 859, 1051, 1464
EaeI YGGCCR 2 cut(s) 1163, 1265
Eam1104I CTCTTC 1 cut(s) 1251
EarI CTCTTC 1 cut(s) 1251
Eco130I CCWWGG 1 cut(s) 149
Eco147I AGGCCT 1 cut(s) 1502
Eco31I GGTCTC 2 cut(s) 1493, 1519
Eco47I GGWCC 2 cut(s) 883, 1340
Eco47III AGCGCT 1 cut(s) 388
Eco57I CTGAAG 3 cut(s) 403, 833, 1315
Eco91I GGTNACC 1 cut(s) 599
EcoO65I GGTNACC 1 cut(s) 599
EcoRI GAATTC 1 cut(s) 392
EcoRII CCWGG 2 cut(s) 1160, 1299
EcoT14I CCWWGG 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 149
Esp3I CGTCTC 1 cut(s) 1185
FalI AAGNNNNNCTT 2 cut(s) 1047, 1079
FbaI TGATCA 1 cut(s) 1051
Fnu4HI GCNGC 8 cut(s) 474, 477, 487, 809, 900, 1041, 1089, 1411
FokI GGATG 6 cut(s) 93, 214, 362, 1240, 1312, 1316
Fsp4HI GCNGC 8 cut(s) 474, 477, 487, 809, 900, 1041, 1089, 1411
FspBI CTAG 6 cut(s) 150, 326, 569, 921, 1355, 1427
GlaI GCGC 1 cut(s) 388
GluI GCNGC 8 cut(s) 474, 477, 487, 809, 900, 1041, 1089, 1411
HaeII RGCGCY 1 cut(s) 390
HaeIII GGCC 3 cut(s) 1165, 1267, 1502
HapII CCGG 4 cut(s) 117, 604, 903, 1338
HhaI GCGC 1 cut(s) 389
Hin6I GCGC 1 cut(s) 387
HinP1I GCGC 1 cut(s) 387
HinfI GANTC 5 cut(s) 536, 550, 623, 781, 1110
HpaII CCGG 4 cut(s) 117, 604, 903, 1338
Hpy166II GTNNAC 2 cut(s) 130, 229
Hpy188I TCNGA 4 cut(s) 319, 372, 1109, 1153
Hpy188III TCNNGA 5 cut(s) 547, 667, 778, 785, 1055
Hpy8I GTNNAC 2 cut(s) 130, 229
HpyAV CCTTC 4 cut(s) 590, 1218, 1339, 1492
HpyCH4III ACNGT 2 cut(s) 124, 235
HpyCH4IV ACGT 2 cut(s) 530, 1194
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 361
HpyF3I CTNAG 2 cut(s) 171, 343
HpySE526I ACGT 2 cut(s) 530, 1194
HspAI GCGC 1 cut(s) 387
Ksp22I TGATCA 1 cut(s) 1051
Kzo9I GATC 9 cut(s) 238, 336, 504, 672, 729, 733, 859, 1051, 1464
Lsp1109I GCAGC 6 cut(s) 463, 485, 498, 820, 1052, 1422
LweI GCATC 3 cut(s) 192, 967, 1240
MaeI CTAG 6 cut(s) 150, 326, 569, 921, 1355, 1427
MaeII ACGT 2 cut(s) 530, 1194
MaeIII GTNAC 4 cut(s) 86, 599, 892, 1447
MalI GATC 9 cut(s) 240, 338, 506, 674, 731, 735, 861, 1053, 1466
MboI GATC 9 cut(s) 238, 336, 504, 672, 729, 733, 859, 1051, 1464
MboII GAAGA 7 cut(s) 331, 605, 682, 800, 826, 953, 1268
MfeI CAATTG 1 cut(s) 1476
MflI RGATCY 3 cut(s) 238, 336, 504
MhlI GDGCHC 2 cut(s) 132, 264
MlsI TGGCCA 1 cut(s) 1165
MluNI TGGCCA 1 cut(s) 1165
MlyI GAGTC 2 cut(s) 790, 1104
MnlI CCTC 6 cut(s) 366, 896, 1128, 1429, 1478, 1513
Mox20I TGGCCA 1 cut(s) 1165
MroXI GAANNNNTTC 1 cut(s) 1260
MscI TGGCCA 1 cut(s) 1165
MseI TTAA 6 cut(s) 450, 686, 752, 1065, 1406, 1531
Msp20I TGGCCA 1 cut(s) 1165
MspA1I CMGCKG 2 cut(s) 476, 811
MspI CCGG 4 cut(s) 117, 604, 903, 1338
MspR9I CCNGG 2 cut(s) 1162, 1301
MunI CAATTG 1 cut(s) 1476
Mva1269I GAATGC 1 cut(s) 1138
MvaI CCWGG 2 cut(s) 1162, 1301
MwoI GCNNNNNNNGC 2 cut(s) 17, 361
NdeII GATC 9 cut(s) 238, 336, 504, 672, 729, 733, 859, 1051, 1464
NheI GCTAGC 2 cut(s) 920, 1426
NmuCI GTSAC 2 cut(s) 86, 1447
NspI RCATGY 2 cut(s) 1370, 1523
PaeI GCATGC 1 cut(s) 1523
PceI AGGCCT 1 cut(s) 1502
PctI GAATGC 1 cut(s) 1138
PdmI GAANNNNTTC 1 cut(s) 1260
PfeI GAWTC 3 cut(s) 536, 550, 623
PflFI GACNNNGTC 1 cut(s) 881
PflMI CCANNNNNTGG 1 cut(s) 1481
PfoI TCCNGGA 1 cut(s) 1299
PinAI ACCGGT 1 cut(s) 603
PkrI GCNGC 8 cut(s) 475, 478, 488, 810, 901, 1042, 1090, 1412
Ple19I CGATCG 1 cut(s) 736
PleI GAGTC 2 cut(s) 789, 1104
PpsI GAGTC 2 cut(s) 789, 1104
PshAI GACNNNNGTC 1 cut(s) 420
Psp1406I AACGTT 1 cut(s) 530
Psp6I CCWGG 2 cut(s) 1160, 1299
PspEI GGTNACC 1 cut(s) 599
PspGI CCWGG 2 cut(s) 1160, 1299
PspPI GGNCC 2 cut(s) 883, 1340
PsrI GAACNNNNNNTAC 2 cut(s) 86, 118
PsuI RGATCY 3 cut(s) 238, 336, 504
PsyI GACNNNGTC 1 cut(s) 881
PvuI CGATCG 1 cut(s) 736
PvuII CAGCTG 2 cut(s) 476, 811
RsaI GTAC 1 cut(s) 869
RsaNI GTAC 1 cut(s) 868
SaqAI TTAA 6 cut(s) 450, 686, 752, 1065, 1406, 1531
SatI GCNGC 8 cut(s) 474, 477, 487, 809, 900, 1041, 1089, 1411
Sau3AI GATC 9 cut(s) 238, 336, 504, 672, 729, 733, 859, 1051, 1464
Sau96I GGNCC 2 cut(s) 883, 1340
ScaI AGTACT 1 cut(s) 869
SchI GAGTC 2 cut(s) 790, 1104
ScrFI CCNGG 2 cut(s) 1162, 1301
SduI GDGCHC 2 cut(s) 132, 264
SfaNI GCATC 3 cut(s) 192, 967, 1240
SfcI CTRYAG 1 cut(s) 51
SinI GGWCC 2 cut(s) 883, 1340
SmlI CTYRAG 1 cut(s) 871
SmoI CTYRAG 1 cut(s) 871
SphI GCATGC 1 cut(s) 1523
SseBI AGGCCT 1 cut(s) 1502
SsiI CCGC 3 cut(s) 224, 900, 1089
SspMI CTAG 6 cut(s) 150, 326, 569, 921, 1355, 1427
StuI AGGCCT 1 cut(s) 1502
StyD4I CCNGG 2 cut(s) 1160, 1299
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 2 cut(s) 124, 235
TaiI ACGT 2 cut(s) 533, 1197
TaqI TCGA 5 cut(s) 207, 564, 732, 736, 1281
TatI WGTACW 1 cut(s) 867
TauI GCSGC 2 cut(s) 902, 1091
TfiI GAWTC 3 cut(s) 536, 550, 623
Tru1I TTAA 6 cut(s) 450, 686, 752, 1065, 1406, 1531
Tru9I TTAA 6 cut(s) 450, 686, 752, 1065, 1406, 1531
TscAI CASTG 2 cut(s) 351, 1339
TseFI GTSAC 2 cut(s) 86, 1447
TseI GCWGC 6 cut(s) 473, 476, 486, 808, 1040, 1410
Tsp45I GTSAC 2 cut(s) 86, 1447
TspGWI ACGGA 1 cut(s) 4
TspRI CASTG 2 cut(s) 351, 1339
Tth111I GACNNNGTC 1 cut(s) 881
Van91I CCANNNNNTGG 1 cut(s) 1481
VneI GTGCAC 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 883, 1340
XapI RAATTY 4 cut(s) 392, 1006, 1319, 1347
XceI RCATGY 2 cut(s) 1370, 1523
XmaJI CCTAGG 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 1260
XspI CTAG 6 cut(s) 150, 326, 569, 921, 1355, 1427
ZrmI AGTACT 1 cut(s) 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.