Rh1BG282700

Assembly, mitochondrial proton-transport ATP synth complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0012541
Physical Location & Seq
Forward (+)
41918475 .. 41919717
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG282700.1

Sequence Viewer

Length: 648 bp
ATGTCTGGAGCATGGGCACGTGGTCGTGGCCTGAACAACAAACCTAGTTGCAACTCTGGTGTTGGGATCAATGCTTTCCAGAAGAGATCGGTGTCTCAAGCTGCAACAAGAGAAGATGATGGCAAAATCAGCATTGGACCACGTAGAGGTGTTGAAATTGGGAAAGATGAAAAAGATTCTGGGATTGTTTACTATGGTCCGATTTCATCAACTATCAAGAAAGTGAAACTTCTCTCGCTTTCAACCTGCTGCCTTTCTGTATCTTTAGGCCCTGTGATAACCTTTATGACATCACCTGATATGAATGTTATCTTAAAGGGTGCGGTGGCATCTTCAGTGATATTCTTAAGTGCTTCTACCACAGCTGCCCTTCACTGGTTTGTGACCCCATACATTCACAAGCTCAAGTGGAAGCCTGGTTCAGACAGTTTTGAGGTCGAAATGTTGTCATGGCTAGCAACTTACATACCAAGGACAATTAAGTTCGCCGATATCCGGCCACCAGAAACCCAAAGGCCTTTTGTGACTTTCAAGGCCAATGGACAGTTTTACTTTGTTGATACTGATCATTGTCAGAATAAGGCTTTGTTAGCAAAGCTGACCCCTCAGAAAGCACCAACTCGTGAGTCTGCTTTTAAGAACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM70

Protein Analysis

215

Amino Acids

23.58

Weight (kDa)

9.7

Isoelectric Point (pI)

28.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM70 PF06979 62 - 199 3.6e-11 TMEM70/TMEM186/TMEM223 protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35790
fragaria_vesca FvH4_7g20020
malus_domestica MD01G1111700.v1.1 MD07G1177900.v1.1
prunus_persica Prupe.2G217200_v2.0.a1 Prupe.2G217200_v2.0.a1
pyrus_communis pycom01g13890 pycom07g17170 pycom07g17180
rosa_chinensis RchiOBHm_Chr1g0363981
rosa_laevigata RLG00000027531
rosa_multiflora Rmu_sc0001607.1_g000014 Rmu_ssc0000167.1_g000025
rosa_roxburghii Rroxscaffold_4G00292790
rosa_rugosa Rorug01G0311700 Rorug01G0311800
rosa_samantha Rh1BG282700 Rh1DG314100
rosa_wichuraiana Rw1G028330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 254
AciI CCGC 1 cut(s) 323
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 497
AcuI CTGAAG 1 cut(s) 318
AcvI CACGTG 1 cut(s) 20
AfiI CCNNNNNNNGG 3 cut(s) 146, 375, 495
AflII CTTAAG 1 cut(s) 346
AgsI TTSAA 3 cut(s) 155, 243, 532
AjnI CCWGG 1 cut(s) 415
AloI GAACNNNNNNTCC 2 cut(s) 403, 435
AluBI AGCT 4 cut(s) 101, 365, 403, 598
AluI AGCT 4 cut(s) 101, 365, 403, 598
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 1 cut(s) 74
AoxI GGCC 5 cut(s) 28, 268, 497, 515, 534
ApeKI GCWGC 3 cut(s) 101, 249, 365
AspS9I GGNCC 3 cut(s) 137, 197, 269
AsuHPI GGTGA 1 cut(s) 285
AsuNHI GCTAGC 1 cut(s) 454
AvaII GGWCC 2 cut(s) 137, 197
BaeGI GKGCMC 1 cut(s) 19
BauI CACGAG 1 cut(s) 621
BbrPI CACGTG 1 cut(s) 20
BbvI GCAGC 3 cut(s) 88, 236, 352
BccI CCATC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 417
BclI TGATCA 1 cut(s) 565
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 2 cut(s) 45, 455
BfrI CTTAAG 1 cut(s) 346
BfuAI ACCTGC 1 cut(s) 254
BisI GCNGC 3 cut(s) 102, 250, 366
BlsI GCNGC 3 cut(s) 103, 251, 367
Bme1390I CCNGG 1 cut(s) 417
Bme18I GGWCC 2 cut(s) 137, 197
BmgT120I GGNCC 3 cut(s) 137, 197, 269
BmrFI CCNGG 1 cut(s) 417
BmsI GCATC 1 cut(s) 338
BmtI GCTAGC 1 cut(s) 458
BpmI CTGGAG 1 cut(s) 27
BpuEI CTTGAG 2 cut(s) 81, 389
BsaAI YACGTR 2 cut(s) 20, 143
BsaBI GATNNNNATC 1 cut(s) 564
BsaJI CCNNGG 1 cut(s) 470
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 375, 495
Bse1I ACTGG 1 cut(s) 380
Bse8I GATNNNNATC 1 cut(s) 564
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 1 cut(s) 470
BseJI GATNNNNATC 1 cut(s) 564
BseLI CCNNNNNNNGG 3 cut(s) 146, 375, 495
BseMII CTCAG 1 cut(s) 620
BseNI ACTGG 1 cut(s) 380
BseSI GKGCMC 1 cut(s) 19
BseXI GCAGC 3 cut(s) 88, 236, 352
BshFI GGCC 5 cut(s) 30, 270, 499, 517, 536
BsiSI CCGG 1 cut(s) 496
BslI CCNNNNNNNGG 3 cut(s) 146, 375, 495
BsmAI GTCTC 1 cut(s) 99
BsnI GGCC 5 cut(s) 30, 270, 499, 517, 536
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 3 cut(s) 66, 86, 565
BspACI CCGC 1 cut(s) 323
BspANI GGCC 5 cut(s) 30, 270, 499, 517, 536
BspCNI CTCAG 1 cut(s) 619
BspMI ACCTGC 1 cut(s) 254
BspOI GCTAGC 1 cut(s) 458
BspPI GGATC 1 cut(s) 74
BspTI CTTAAG 1 cut(s) 346
BsrI ACTGG 1 cut(s) 380
BssECI CCNNGG 1 cut(s) 470
BssMI GATC 3 cut(s) 66, 86, 565
BssSI CACGAG 1 cut(s) 621
BssT1I CCWWGG 1 cut(s) 470
Bst2BI CACGAG 1 cut(s) 621
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 2 cut(s) 428, 546
Bst6I CTCTTC 1 cut(s) 77
BstAFI CTTAAG 1 cut(s) 346
BstBAI YACGTR 2 cut(s) 20, 143
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 1 cut(s) 606
BstKTI GATC 3 cut(s) 69, 89, 568
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 3 cut(s) 66, 86, 565
BstMWI GCNNNNNNNGC 2 cut(s) 129, 590
BstNI CCWGG 1 cut(s) 417
BstSCI CCNGG 1 cut(s) 415
BstSLI GKGCMC 1 cut(s) 19
BstV1I GCAGC 3 cut(s) 88, 236, 352
BsuRI GGCC 5 cut(s) 30, 270, 499, 517, 536
BtsIMutI CAGTG 2 cut(s) 342, 373
BveI ACCTGC 1 cut(s) 254
Cac8I GCNNGC 1 cut(s) 456
Cfr13I GGNCC 3 cut(s) 137, 197, 269
CviAII CATG 2 cut(s) 12, 450
DdeI CTNAG 1 cut(s) 606
DpnI GATC 3 cut(s) 68, 88, 567
DpnII GATC 3 cut(s) 66, 86, 565
EaeI YGGCCR 1 cut(s) 497
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 470
Eco147I AGGCCT 1 cut(s) 517
Eco32I GATATC 1 cut(s) 493
Eco47I GGWCC 2 cut(s) 137, 197
Eco57I CTGAAG 1 cut(s) 318
Eco72I CACGTG 1 cut(s) 20
EcoO109I RGGNCCY 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 415
EcoRV GATATC 1 cut(s) 493
EcoT14I CCWWGG 1 cut(s) 470
ErhI CCWWGG 1 cut(s) 470
FaeI CATG 2 cut(s) 15, 453
FaiI YATR 7 cut(s) 13, 195, 287, 302, 391, 451, 467
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FatI CATG 2 cut(s) 11, 449
FbaI TGATCA 1 cut(s) 565
Fnu4HI GCNGC 3 cut(s) 102, 250, 366
Fsp4HI GCNGC 3 cut(s) 102, 250, 366
FspBI CTAG 2 cut(s) 45, 455
GluI GCNGC 3 cut(s) 102, 250, 366
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 5 cut(s) 30, 270, 499, 517, 536
HapII CCGG 1 cut(s) 496
Hin1II CATG 2 cut(s) 15, 453
HinfI GANTC 2 cut(s) 176, 626
HpaII CCGG 1 cut(s) 496
HphI GGTGA 1 cut(s) 285
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 4 cut(s) 201, 424, 576, 609
Hpy188III TCNNGA 4 cut(s) 6, 79, 217, 623
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 380
HpyCH4III ACNGT 2 cut(s) 428, 546
HpyCH4IV ACGT 2 cut(s) 19, 142
HpyCH4V TGCA 2 cut(s) 51, 104
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 590
HpyF3I CTNAG 1 cut(s) 606
HpySE526I ACGT 2 cut(s) 19, 142
Hsp92II CATG 2 cut(s) 15, 453
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 3 cut(s) 66, 86, 565
LmnI GCTCC 1 cut(s) 8
Lsp1109I GCAGC 3 cut(s) 88, 236, 352
LweI GCATC 1 cut(s) 338
MaeI CTAG 2 cut(s) 45, 455
MaeII ACGT 2 cut(s) 19, 142
MaeIII GTNAC 2 cut(s) 382, 523
MalI GATC 3 cut(s) 68, 88, 567
MboI GATC 3 cut(s) 66, 86, 565
MboII GAAGA 3 cut(s) 94, 125, 324
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 2 cut(s) 156, 477
MlyI GAGTC 1 cut(s) 635
MnlI CCTC 3 cut(s) 140, 427, 615
MseI TTAA 4 cut(s) 314, 347, 480, 636
MspA1I CMGCKG 1 cut(s) 365
MspCI CTTAAG 1 cut(s) 346
MspI CCGG 1 cut(s) 496
MspR9I CCNGG 1 cut(s) 417
MvaI CCWGG 1 cut(s) 417
MwoI GCNNNNNNNGC 2 cut(s) 129, 590
NdeII GATC 3 cut(s) 66, 86, 565
NheI GCTAGC 1 cut(s) 454
NlaIII CATG 2 cut(s) 15, 453
NmuCI GTSAC 2 cut(s) 382, 523
PceI AGGCCT 1 cut(s) 517
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 3 cut(s) 103, 251, 367
PleI GAGTC 1 cut(s) 634
PmaCI CACGTG 1 cut(s) 20
PmlI CACGTG 1 cut(s) 20
PpsI GAGTC 1 cut(s) 634
Ppu21I YACGTR 2 cut(s) 20, 143
Psp6I CCWGG 1 cut(s) 415
PspCI CACGTG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 415
PspPI GGNCC 3 cut(s) 137, 197, 269
PvuII CAGCTG 1 cut(s) 365
SaqAI TTAA 4 cut(s) 314, 347, 480, 636
SatI GCNGC 3 cut(s) 102, 250, 366
Sau3AI GATC 3 cut(s) 66, 86, 565
Sau96I GGNCC 3 cut(s) 137, 197, 269
SchI GAGTC 1 cut(s) 635
ScrFI CCNGG 1 cut(s) 417
SduI GDGCHC 1 cut(s) 19
SfaNI GCATC 1 cut(s) 338
SinI GGWCC 2 cut(s) 137, 197
SmlI CTYRAG 3 cut(s) 96, 346, 404
SmoI CTYRAG 3 cut(s) 96, 346, 404
Sse9I AATT 2 cut(s) 156, 477
SseBI AGGCCT 1 cut(s) 517
SsiI CCGC 1 cut(s) 323
SspMI CTAG 2 cut(s) 45, 455
StuI AGGCCT 1 cut(s) 517
StyD4I CCNGG 1 cut(s) 415
StyI CCWWGG 1 cut(s) 470
TaaI ACNGT 2 cut(s) 428, 546
TaiI ACGT 2 cut(s) 22, 145
TaqI TCGA 1 cut(s) 438
TasI AATT 2 cut(s) 156, 477
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 4 cut(s) 314, 347, 480, 636
Tru9I TTAA 4 cut(s) 314, 347, 480, 636
TscAI CASTG 2 cut(s) 342, 380
TseFI GTSAC 2 cut(s) 382, 523
TseI GCWGC 3 cut(s) 101, 249, 365
Tsp45I GTSAC 2 cut(s) 382, 523
TspDTI ATGAA 3 cut(s) 183, 195, 317
TspRI CASTG 2 cut(s) 342, 380
Vha464I CTTAAG 1 cut(s) 346
VpaK11BI GGWCC 2 cut(s) 137, 197
XspI CTAG 2 cut(s) 45, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.