pycom07g17170

Assembly, mitochondrial proton-transport ATP synth complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0012541
Physical Location & Seq
Forward (+)
19715206 .. 19716813
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g17170.2

Sequence Viewer

Length: 393 bp
ATGACGAGGGCGGCTCTCTTTCAGTTGCTGCGATCACACTCCAGACAACTCACACCCTCAAACCTCCGCTCAGGTTATCAGCCATGCAGGTCTGCAGCATGGGCTGCTGGTCTGAACACTAAACTGAGTTTCCAGTCTGGCTTCGAGATCAATGCTTCACAGAAAAGATGGGCATCTCATGCCACAACAAGAGAATATGATAGCAAAATCAGCATTGGACCACGTAGGGGTGGCCAAGTTGGGGAAGATGAAAAGGACTCCGGGGTCGTTTACTATGGCCCAATCTCATCTACTATCAAGAAAGTGAAACTTCTCTCGCTGTCGACCTGCTGCCTTTCTGTATCTCTAGGCCCTGTGATAACCTTTATGACATCTCCTGATATGAATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM70

Protein Analysis

131

Amino Acids

14.22

Weight (kDa)

9.67

Isoelectric Point (pI)

50.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35790
fragaria_vesca FvH4_7g20020
malus_domestica MD01G1111700.v1.1 MD07G1177900.v1.1
prunus_persica Prupe.2G217200_v2.0.a1 Prupe.2G217200_v2.0.a1
pyrus_communis pycom01g13890 pycom07g17170 pycom07g17180
rosa_chinensis RchiOBHm_Chr1g0363981
rosa_laevigata RLG00000027531
rosa_multiflora Rmu_sc0001607.1_g000014 Rmu_ssc0000167.1_g000025
rosa_roxburghii Rroxscaffold_4G00292790
rosa_rugosa Rorug01G0311700 Rorug01G0311800
rosa_samantha Rh1BG282700 Rh1DG314100
rosa_wichuraiana Rw1G028330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
Acc36I ACCTGC 2 cut(s) 78, 335
AccBSI CCGCTC 1 cut(s) 69
AccI GTMKAC 1 cut(s) 323
AciI CCGC 2 cut(s) 11, 67
AcoI YGGCCR 1 cut(s) 232
AfiI CCNNNNNNNGG 2 cut(s) 227, 241
AlwNI CAGNNNCTG 1 cut(s) 28
AoxI GGCC 3 cut(s) 232, 277, 349
ApeKI GCWGC 4 cut(s) 28, 95, 104, 330
AspS9I GGNCC 3 cut(s) 218, 278, 350
AsuC2I CCSGG 1 cut(s) 262
AvaII GGWCC 1 cut(s) 218
BalI TGGCCA 1 cut(s) 234
BbvI GCAGC 4 cut(s) 15, 91, 107, 317
BccI CCATC 1 cut(s) 162
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BcnI CCSGG 1 cut(s) 262
BfaI CTAG 1 cut(s) 347
BfmI CTRYAG 1 cut(s) 93
BfuAI ACCTGC 2 cut(s) 78, 335
BisI GCNGC 5 cut(s) 12, 29, 96, 105, 331
BlsI GCNGC 5 cut(s) 13, 30, 97, 106, 332
Bme1390I CCNGG 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 3 cut(s) 218, 278, 350
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 1 cut(s) 182
BplI GAGNNNNNCTC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 25
Bpu10I CCTNAGC 1 cut(s) 70
BpuMI CCSGG 1 cut(s) 262
BsaAI YACGTR 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 241
Bse1I ACTGG 1 cut(s) 133
Bse8I GATNNNNATC 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 261
BseJI GATNNNNATC 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 227, 241
BseMII CTCAG 2 cut(s) 84, 116
BseNI ACTGG 1 cut(s) 133
BseXI GCAGC 4 cut(s) 15, 91, 107, 317
BshFI GGCC 3 cut(s) 234, 279, 351
BsiSI CCGG 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 227, 241
BsnI GGCC 3 cut(s) 234, 279, 351
Bsp143I GATC 2 cut(s) 32, 147
BspACI CCGC 2 cut(s) 11, 67
BspANI GGCC 3 cut(s) 234, 279, 351
BspCNI CTCAG 2 cut(s) 83, 117
BspMAI CTGCAG 1 cut(s) 97
BspMI ACCTGC 2 cut(s) 78, 335
BsrBI CCGCTC 1 cut(s) 69
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 2 cut(s) 32, 147
BstAPI GCANNNNNTGC 2 cut(s) 104, 179
BstBAI YACGTR 1 cut(s) 224
BstDEI CTNAG 2 cut(s) 70, 125
BstKTI GATC 2 cut(s) 35, 150
BstMBI GATC 2 cut(s) 32, 147
BstMWI GCNNNNNNNGC 4 cut(s) 101, 104, 179, 210
BstSCI CCNGG 1 cut(s) 260
BstSFI CTRYAG 1 cut(s) 93
BstV1I GCAGC 4 cut(s) 15, 91, 107, 317
BsuRI GGCC 3 cut(s) 234, 279, 351
BveI ACCTGC 2 cut(s) 78, 335
CaiI CAGNNNCTG 1 cut(s) 28
Cfr13I GGNCC 3 cut(s) 218, 278, 350
CviAII CATG 3 cut(s) 84, 99, 179
CviJI RGCY 7 cut(s) 14, 82, 104, 141, 234, 279, 351
CviKI_1 RGCY 7 cut(s) 14, 82, 104, 141, 234, 279, 351
DdeI CTNAG 2 cut(s) 70, 125
DpnI GATC 2 cut(s) 34, 149
DpnII GATC 2 cut(s) 32, 147
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
EaeI YGGCCR 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 350
FaeI CATG 3 cut(s) 87, 102, 182
FaiI YATR 7 cut(s) 85, 100, 180, 198, 276, 368, 383
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 3 cut(s) 83, 98, 178
FblI GTMKAC 1 cut(s) 323
Fnu4HI GCNGC 5 cut(s) 12, 29, 96, 105, 331
Fsp4HI GCNGC 5 cut(s) 12, 29, 96, 105, 331
FspBI CTAG 1 cut(s) 347
GluI GCNGC 5 cut(s) 12, 29, 96, 105, 331
GsuI CTGGAG 1 cut(s) 25
HaeIII GGCC 3 cut(s) 234, 279, 351
HapII CCGG 1 cut(s) 261
Hin1II CATG 3 cut(s) 87, 102, 182
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HinfI GANTC 1 cut(s) 257
HpaII CCGG 1 cut(s) 261
Hpy166II GTNNAC 2 cut(s) 271, 324
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 4 cut(s) 42, 145, 298, 377
Hpy8I GTNNAC 2 cut(s) 271, 324
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 87, 95
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 104, 179, 210
HpyF3I CTNAG 2 cut(s) 70, 125
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 3 cut(s) 87, 102, 182
Kzo9I GATC 2 cut(s) 32, 147
LpnPI CCDG 9 cut(s) 55, 57, 73, 93, 123, 146, 274, 340, 366
Lsp1109I GCAGC 4 cut(s) 15, 91, 107, 317
LweI GCATC 1 cut(s) 182
MaeI CTAG 1 cut(s) 347
MaeII ACGT 1 cut(s) 223
MalI GATC 2 cut(s) 34, 149
MbiI CCGCTC 1 cut(s) 69
MboI GATC 2 cut(s) 32, 147
MboII GAAGA 1 cut(s) 257
MlsI TGGCCA 1 cut(s) 234
MluNI TGGCCA 1 cut(s) 234
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 2 cut(s) 67, 74
Mox20I TGGCCA 1 cut(s) 234
MscI TGGCCA 1 cut(s) 234
Msp20I TGGCCA 1 cut(s) 234
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 262
MwoI GCNNNNNNNGC 4 cut(s) 101, 104, 179, 210
NciI CCSGG 1 cut(s) 262
NdeII GATC 2 cut(s) 32, 147
NlaIII CATG 3 cut(s) 87, 102, 182
PkrI GCNGC 5 cut(s) 13, 30, 97, 106, 332
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
Ppu21I YACGTR 1 cut(s) 224
PspPI GGNCC 3 cut(s) 218, 278, 350
PstI CTGCAG 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 28
SalI GTCGAC 1 cut(s) 322
SatI GCNGC 5 cut(s) 12, 29, 96, 105, 331
Sau3AI GATC 2 cut(s) 32, 147
Sau96I GGNCC 3 cut(s) 218, 278, 350
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 262
SetI ASST 6 cut(s) 66, 76, 92, 226, 329, 365
SfaNI GCATC 1 cut(s) 182
SfcI CTRYAG 1 cut(s) 93
SinI GGWCC 1 cut(s) 218
SsiI CCGC 2 cut(s) 11, 67
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 1 cut(s) 260
TaiI ACGT 1 cut(s) 226
TaqI TCGA 2 cut(s) 144, 323
TauI GCSGC 1 cut(s) 14
TseI GCWGC 4 cut(s) 28, 95, 104, 330
TspDTI ATGAA 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 323
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.