AT2G35790

Assembly, mitochondrial proton-transport ATP synth complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012541
Physical Location & Seq
Forward (+)
15040669 .. 15042123
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G35790.1

Sequence Viewer

Length: 717 bp
ATGGGAAGATCAGCTCTGATTCACTTGCTTCGCTCCCAATCCCGACGTCTCTCTTCCTCCACCTTCACTTCAGGATATCATCACCGGTCAATAGCAGGATCATGGTCATCATCAGTGAACCCGAAGGTCAGATTCCAGGTTCCATCCCTTAGCCAGAGAAGCTGGGCATCATTTGGAGCAAAGACTAGAGAGGACGATGATGAGCACAAGATCAGCATCGGACCCCAAGAGAAGAAAGAAGAGAAGGATGGAGGTGTGGTTTACTATGGACCAATCTCATCAACCATAAAGAAAGTGAAACTCCTCTCACTCTCCACTTGCTGTCTATCAGTCTCTCTTGGCCCGGTCATCACTTTCATGACTTCCCCGGGACTGAATGTGATCATGAAAGGTGCTGTTGCCTCTACTGTGATCTTCCTTAGCGCATCCACAACCGCTGCTCTCCACTGGTTTGTTAGTCCCTACGTGCACAAGCTGAGGTGGCAGCCTGGTTCAGACACTTTTGAGGTCGAGATGATGACTTGGCTCGGCACATTTAGCGCAAAGACACTGAAATTCTCAGACATACGTTATCCAGACACGCAAAGACCGTATGTGAGCTTCAAGGCTGATGGGAATTTCTACTTTGTGGATGCAGATCATTGCCCTAACAAGGCATTGTTGGCTAGGCTCACTCCTCCAAAGGATGCTCATGACTCTGCTTTCAAGAACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM70

Protein Analysis

238

Amino Acids

26.41

Weight (kDa)

9.58

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM70 PF06979 86 - 223 6.2e-12 TMEM70/TMEM186/TMEM223 protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35790
fragaria_vesca FvH4_7g20020
malus_domestica MD01G1111700.v1.1 MD07G1177900.v1.1
prunus_persica Prupe.2G217200_v2.0.a1 Prupe.2G217200_v2.0.a1
pyrus_communis pycom01g13890 pycom07g17170 pycom07g17180
rosa_chinensis RchiOBHm_Chr1g0363981
rosa_laevigata RLG00000027531
rosa_multiflora Rmu_sc0001607.1_g000014 Rmu_ssc0000167.1_g000025
rosa_roxburghii Rroxscaffold_4G00292790
rosa_rugosa Rorug01G0311700 Rorug01G0311800
rosa_samantha Rh1BG282700 Rh1DG314100
rosa_wichuraiana Rw1G028330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 49
AciI CCGC 1 cut(s) 435
AclWI GGATC 1 cut(s) 106
AcsI RAATTY 2 cut(s) 554, 616
AcuI CTGAAG 1 cut(s) 54
AcyI GRCGYC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 652
AgeI ACCGGT 1 cut(s) 84
AgsI TTSAA 2 cut(s) 604, 706
AjnI CCWGG 2 cut(s) 135, 487
AluBI AGCT 4 cut(s) 14, 162, 475, 600
AluI AGCT 4 cut(s) 14, 162, 475, 600
Alw21I GWGCWC 2 cut(s) 207, 471
Alw26I GTCTC 2 cut(s) 53, 337
Alw44I GTGCAC 1 cut(s) 467
AlwI GGATC 1 cut(s) 106
Ama87I CYCGRG 1 cut(s) 367
AoxI GGCC 1 cut(s) 340
ApaLI GTGCAC 1 cut(s) 467
ApeKI GCWGC 2 cut(s) 437, 484
ApoI RAATTY 2 cut(s) 554, 616
AsiGI ACCGGT 1 cut(s) 84
AspLEI GCGC 2 cut(s) 425, 542
AspS9I GGNCC 3 cut(s) 221, 269, 341
AsuC2I CCSGG 3 cut(s) 344, 368, 369
AsuHPI GGTGA 1 cut(s) 74
AvaI CYCGRG 1 cut(s) 367
AvaII GGWCC 2 cut(s) 221, 269
BaeGI GKGCMC 1 cut(s) 471
BarI GAAGNNNNNNTAC 2 cut(s) 584, 616
Bbv12I GWGCWC 2 cut(s) 207, 471
BbvCI CCTCAGC 1 cut(s) 476
BbvI GCAGC 2 cut(s) 424, 496
BccI CCATC 3 cut(s) 151, 242, 605
BciT130I CCWGG 2 cut(s) 137, 489
BclI TGATCA 1 cut(s) 381
BcnI CCSGG 3 cut(s) 344, 368, 369
BcoDI GTCTC 2 cut(s) 53, 337
BfaI CTAG 2 cut(s) 186, 666
BisI GCNGC 2 cut(s) 438, 485
BlsI GCNGC 2 cut(s) 439, 486
Bme1390I CCNGG 5 cut(s) 137, 344, 368, 369, 489
Bme18I GGWCC 2 cut(s) 221, 269
BmeT110I CYCGRG 1 cut(s) 367
BmgT120I GGNCC 3 cut(s) 221, 269, 341
BmiI GGNNCC 2 cut(s) 141, 223
BmrFI CCNGG 5 cut(s) 137, 344, 368, 369, 489
BmsI GCATC 5 cut(s) 176, 225, 434, 622, 676
Bpu10I CCTNAGC 3 cut(s) 149, 419, 476
BpuMI CCSGG 3 cut(s) 344, 368, 369
BsaAI YACGTR 1 cut(s) 466
BsaBI GATNNNNATC 2 cut(s) 215, 636
BsaHI GRCGYC 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 366, 367
BsaWI WCCGGW 1 cut(s) 84
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 652
Bse118I RCCGGY 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 452
Bse3DI GCAATG 1 cut(s) 640
Bse8I GATNNNNATC 2 cut(s) 215, 636
BseBI CCWGG 2 cut(s) 137, 489
BseDI CCNNGG 2 cut(s) 366, 367
BseGI GGATG 5 cut(s) 143, 253, 425, 637, 691
BseJI GATNNNNATC 2 cut(s) 215, 636
BseLI CCNNNNNNNGG 1 cut(s) 652
BseMI GCAATG 1 cut(s) 640
BseMII CTCAG 2 cut(s) 467, 573
BseNI ACTGG 1 cut(s) 452
BseRI GAGGAG 2 cut(s) 293, 666
BseSI GKGCMC 1 cut(s) 471
BseXI GCAGC 2 cut(s) 424, 496
BseYI CCCAGC 1 cut(s) 162
BshFI GGCC 1 cut(s) 342
BshTI ACCGGT 1 cut(s) 84
BsiHKAI GWGCWC 2 cut(s) 207, 471
BsiHKCI CYCGRG 1 cut(s) 367
BsiSI CCGG 3 cut(s) 85, 344, 368
BslFI GGGAC 2 cut(s) 384, 444
BslI CCNNNNNNNGG 1 cut(s) 652
BsmAI GTCTC 2 cut(s) 53, 337
BsmBI CGTCTC 1 cut(s) 53
BsmFI GGGAC 2 cut(s) 384, 444
BsnI GGCC 1 cut(s) 342
BsoBI CYCGRG 1 cut(s) 367
Bsp1286I GDGCHC 2 cut(s) 207, 471
Bsp143I GATC 6 cut(s) 8, 98, 210, 381, 411, 637
BspACI CCGC 1 cut(s) 435
BspANI GGCC 1 cut(s) 342
BspCNI CTCAG 2 cut(s) 468, 572
BspHI TCATGA 3 cut(s) 357, 384, 691
BspLI GGNNCC 2 cut(s) 141, 223
BspPI GGATC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 640
BsrFI RCCGGY 1 cut(s) 84
BsrI ACTGG 1 cut(s) 452
BssAI RCCGGY 1 cut(s) 84
BssECI CCNNGG 2 cut(s) 366, 367
BssMI GATC 6 cut(s) 8, 98, 210, 381, 411, 637
BssNI GRCGYC 1 cut(s) 46
Bst2UI CCWGG 2 cut(s) 137, 489
Bst4CI ACNGT 2 cut(s) 409, 591
Bst6I CTCTTC 2 cut(s) 58, 234
BstACI GRCGYC 1 cut(s) 46
BstBAI YACGTR 1 cut(s) 466
BstDEI CTNAG 4 cut(s) 149, 419, 476, 559
BstF5I GGATG 5 cut(s) 143, 253, 425, 637, 691
BstHHI GCGC 2 cut(s) 425, 542
BstKTI GATC 6 cut(s) 11, 101, 213, 384, 414, 640
BstMAI GTCTC 2 cut(s) 53, 337
BstMBI GATC 6 cut(s) 8, 98, 210, 381, 411, 637
BstMWI GCNNNNNNNGC 4 cut(s) 159, 481, 537, 662
BstNI CCWGG 2 cut(s) 137, 489
BstSCI CCNGG 5 cut(s) 135, 342, 366, 367, 487
BstSLI GKGCMC 1 cut(s) 471
BstV1I GCAGC 2 cut(s) 424, 496
BsuRI GGCC 1 cut(s) 342
BtsCI GGATG 5 cut(s) 143, 253, 425, 637, 691
BtsIMutI CAGTG 3 cut(s) 120, 445, 548
CciI TCATGA 3 cut(s) 357, 384, 691
CfoI GCGC 2 cut(s) 425, 542
Cfr10I RCCGGY 1 cut(s) 84
Cfr13I GGNCC 3 cut(s) 221, 269, 341
Cfr9I CCCGGG 1 cut(s) 367
CspAI ACCGGT 1 cut(s) 84
CviAII CATG 4 cut(s) 102, 358, 385, 692
DdeI CTNAG 4 cut(s) 149, 419, 476, 559
DpnI GATC 6 cut(s) 10, 100, 212, 383, 413, 639
DpnII GATC 6 cut(s) 8, 98, 210, 381, 411, 637
Eam1104I CTCTTC 2 cut(s) 58, 234
EarI CTCTTC 2 cut(s) 58, 234
Eco32I GATATC 1 cut(s) 77
Eco47I GGWCC 2 cut(s) 221, 269
Eco57I CTGAAG 1 cut(s) 54
Eco88I CYCGRG 1 cut(s) 367
EcoRII CCWGG 2 cut(s) 135, 487
EcoRV GATATC 1 cut(s) 77
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 4 cut(s) 105, 361, 388, 695
FaiI YATR 8 cut(s) 103, 267, 287, 359, 386, 566, 594, 693
FaqI GGGAC 2 cut(s) 384, 444
FatI CATG 4 cut(s) 101, 357, 384, 691
FbaI TGATCA 1 cut(s) 381
Fnu4HI GCNGC 2 cut(s) 438, 485
FokI GGATG 5 cut(s) 130, 260, 412, 644, 698
Fsp4HI GCNGC 2 cut(s) 438, 485
FspBI CTAG 2 cut(s) 186, 666
GlaI GCGC 2 cut(s) 424, 541
GluI GCNGC 2 cut(s) 438, 485
GsaI CCCAGC 1 cut(s) 166
HaeIII GGCC 1 cut(s) 342
HapII CCGG 3 cut(s) 85, 344, 368
HhaI GCGC 2 cut(s) 425, 542
Hin1I GRCGYC 1 cut(s) 46
Hin1II CATG 4 cut(s) 105, 361, 388, 695
Hin6I GCGC 2 cut(s) 423, 540
HinP1I GCGC 2 cut(s) 423, 540
HinfI GANTC 3 cut(s) 19, 132, 695
HpaII CCGG 3 cut(s) 85, 344, 368
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 3 cut(s) 118, 262, 469
Hpy188I TCNGA 5 cut(s) 18, 131, 221, 496, 562
Hpy188III TCNNGA 8 cut(s) 42, 72, 358, 385, 511, 575, 692, 706
Hpy8I GTNNAC 3 cut(s) 118, 262, 469
Hpy99I CGWCG 1 cut(s) 48
HpyAV CCTTC 3 cut(s) 73, 118, 238
HpyCH4III ACNGT 2 cut(s) 409, 591
HpyCH4IV ACGT 3 cut(s) 46, 465, 568
HpyCH4V TGCA 2 cut(s) 469, 635
HpyF10VI GCNNNNNNNGC 4 cut(s) 159, 481, 537, 662
HpyF3I CTNAG 4 cut(s) 149, 419, 476, 559
HpySE526I ACGT 3 cut(s) 46, 465, 568
Hsp92I GRCGYC 1 cut(s) 46
Hsp92II CATG 4 cut(s) 105, 361, 388, 695
HspAI GCGC 2 cut(s) 423, 540
Ksp22I TGATCA 1 cut(s) 381
Kzo9I GATC 6 cut(s) 8, 98, 210, 381, 411, 637
LmnI GCTCC 2 cut(s) 38, 176
Lsp1109I GCAGC 2 cut(s) 424, 496
LweI GCATC 5 cut(s) 176, 225, 434, 622, 676
MaeI CTAG 2 cut(s) 186, 666
MaeII ACGT 3 cut(s) 46, 465, 568
MalI GATC 6 cut(s) 10, 100, 212, 383, 413, 639
MboI GATC 6 cut(s) 8, 98, 210, 381, 411, 637
MboII GAAGA 5 cut(s) 18, 45, 244, 251, 406
MhlI GDGCHC 2 cut(s) 207, 471
MluCI AATT 2 cut(s) 554, 616
MlyI GAGTC 1 cut(s) 689
MnlI CCTC 8 cut(s) 67, 184, 245, 314, 412, 471, 499, 687
MslI CAYNNNNRTG 1 cut(s) 356
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 3 cut(s) 85, 344, 368
MspR9I CCNGG 5 cut(s) 137, 344, 368, 369, 489
MvaI CCWGG 2 cut(s) 137, 489
MwoI GCNNNNNNNGC 4 cut(s) 159, 481, 537, 662
NciI CCSGG 3 cut(s) 344, 368, 369
NdeII GATC 6 cut(s) 8, 98, 210, 381, 411, 637
NlaIII CATG 4 cut(s) 105, 361, 388, 695
NlaIV GGNNCC 2 cut(s) 141, 223
NmeAIII GCCGAG 1 cut(s) 507
PagI TCATGA 3 cut(s) 357, 384, 691
PcsI WCGNNNNNNNCGW 1 cut(s) 587
PfeI GAWTC 2 cut(s) 19, 132
PinAI ACCGGT 1 cut(s) 84
PkrI GCNGC 2 cut(s) 439, 486
PleI GAGTC 1 cut(s) 689
PpsI GAGTC 1 cut(s) 689
Ppu21I YACGTR 1 cut(s) 466
Psp6I CCWGG 2 cut(s) 135, 487
PspFI CCCAGC 1 cut(s) 162
PspGI CCWGG 2 cut(s) 135, 487
PspN4I GGNNCC 2 cut(s) 141, 223
PspPI GGNCC 3 cut(s) 221, 269, 341
RseI CAYNNNNRTG 1 cut(s) 356
SatI GCNGC 2 cut(s) 438, 485
Sau3AI GATC 6 cut(s) 8, 98, 210, 381, 411, 637
Sau96I GGNCC 3 cut(s) 221, 269, 341
SchI GAGTC 1 cut(s) 689
ScrFI CCNGG 5 cut(s) 137, 344, 368, 369, 489
SduI GDGCHC 2 cut(s) 207, 471
SfaNI GCATC 5 cut(s) 176, 225, 434, 622, 676
SinI GGWCC 2 cut(s) 221, 269
SmaI CCCGGG 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 356
Sse9I AATT 2 cut(s) 554, 616
SsiI CCGC 1 cut(s) 435
SspMI CTAG 2 cut(s) 186, 666
StyD4I CCNGG 5 cut(s) 135, 342, 366, 367, 487
TaaI ACNGT 2 cut(s) 409, 591
TaiI ACGT 3 cut(s) 49, 468, 571
TaqI TCGA 1 cut(s) 510
TasI AATT 2 cut(s) 554, 616
TfiI GAWTC 2 cut(s) 19, 132
TscAI CASTG 3 cut(s) 120, 452, 555
TseI GCWGC 2 cut(s) 437, 484
TspDTI ATGAA 2 cut(s) 346, 401
TspMI CCCGGG 1 cut(s) 367
TspRI CASTG 3 cut(s) 120, 452, 555
VneI GTGCAC 1 cut(s) 467
VpaK11BI GGWCC 2 cut(s) 221, 269
XapI RAATTY 2 cut(s) 554, 616
XmaI CCCGGG 1 cut(s) 367
XspI CTAG 2 cut(s) 186, 666
ZraI GACGTC 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.