pycom01g13890

Assembly, mitochondrial proton-transport ATP synth complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0012541
Physical Location & Seq
Forward (+)
14224159 .. 14225941
1783 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g13890.1

Sequence Viewer

Length: 516 bp
ATGACGAGAGCGGCTCTCTTTCAGTTGCTGCGATCACAGTCCAGACACCTCGCATCCTCAAGCTTCCGCTCAGGTTATCGGCCGTGCAGGTCTGCAGCATGGGCTGCTAGTCTGTACACTAAACTGGGTTTCAACTCTGGCTTCGAGATCAATTCTTCACAGAAAAGATGGGCTTCTCATGCCACAACAAGAGAAGATGATGGCAAAATCAGCATTGGACCACGCAGGGGTGGCGAAATTGGGGAAGATGAAAAGGACTCTGGGGTTGTTTACTATGGTCCAATCTCATCTACTATCAAGAAAGTGAAACTTCTCTCGCTGTCGACCTGCTGCCTTTCTGTATCTCTAGGCCCTGTGATAACCTTTATGACATCTCCTGGTATGAAGATCGATCTTGAAGGGTGCAGTGGCATCTTCAGTGATATTCTTGAGTGCTTCTACCACAGCCGCTCTTCACTGGTTCGTGACACCATACATTCACAAGCTCAAGTGGAAGCCTGGTTCAGACAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM70

Protein Analysis

172

Amino Acids

18.92

Weight (kDa)

9.22

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35790
fragaria_vesca FvH4_7g20020
malus_domestica MD01G1111700.v1.1 MD07G1177900.v1.1
prunus_persica Prupe.2G217200_v2.0.a1 Prupe.2G217200_v2.0.a1
pyrus_communis pycom01g13890 pycom07g17170 pycom07g17180
rosa_chinensis RchiOBHm_Chr1g0363981
rosa_laevigata RLG00000027531
rosa_multiflora Rmu_sc0001607.1_g000014 Rmu_ssc0000167.1_g000025
rosa_roxburghii Rroxscaffold_4G00292790
rosa_rugosa Rorug01G0311700 Rorug01G0311800
rosa_samantha Rh1BG282700 Rh1DG314100
rosa_wichuraiana Rw1G028330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 78, 335
AccBSI CCGCTC 3 cut(s) 11, 69, 450
AccI GTMKAC 1 cut(s) 323
AciI CCGC 3 cut(s) 11, 67, 448
AcoI YGGCCR 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 400
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 2 cut(s) 133, 398
AjnI CCWGG 2 cut(s) 376, 497
AloI GAACNNNNNNTCC 1 cut(s) 485
AluBI AGCT 2 cut(s) 63, 485
AluI AGCT 2 cut(s) 63, 485
AlwNI CAGNNNCTG 1 cut(s) 28
AoxI GGCC 2 cut(s) 80, 349
ApeKI GCWGC 4 cut(s) 28, 95, 104, 330
AspS9I GGNCC 3 cut(s) 218, 278, 350
AvaII GGWCC 2 cut(s) 218, 278
BbvI GCAGC 4 cut(s) 15, 91, 107, 317
BccI CCATC 2 cut(s) 162, 194
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 2 cut(s) 378, 499
BfaI CTAG 2 cut(s) 108, 347
BfmI CTRYAG 1 cut(s) 93
BfuAI ACCTGC 2 cut(s) 78, 335
BisI GCNGC 6 cut(s) 12, 29, 96, 105, 331, 448
BlsI GCNGC 6 cut(s) 13, 30, 97, 106, 332, 449
Bme1390I CCNGG 2 cut(s) 378, 499
Bme18I GGWCC 2 cut(s) 218, 278
BmgT120I GGNCC 3 cut(s) 218, 278, 350
BmrFI CCNGG 2 cut(s) 378, 499
BmrI ACTGGG 1 cut(s) 134
BmsI GCATC 2 cut(s) 62, 420
BmuI ACTGGG 1 cut(s) 134
BplI GAGNNNNNCTC 2 cut(s) 30, 32
Bpu10I CCTNAGC 1 cut(s) 70
BpuEI CTTGAG 3 cut(s) 43, 449, 471
Bsa29I ATCGAT 1 cut(s) 390
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 129, 462
BseBI CCWGG 2 cut(s) 378, 499
BseCI ATCGAT 1 cut(s) 390
BseGI GGATG 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 2 cut(s) 129, 462
BseX3I CGGCCG 1 cut(s) 80
BseXI GCAGC 4 cut(s) 15, 91, 107, 317
BsgI GTGCAG 2 cut(s) 106, 424
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 2 cut(s) 82, 351
BshVI ATCGAT 1 cut(s) 390
BsiEI CGRYCG 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 227
BsnI GGCC 2 cut(s) 82, 351
Bsp1407I TGTACA 1 cut(s) 114
Bsp143I GATC 4 cut(s) 32, 147, 387, 391
BspACI CCGC 3 cut(s) 11, 67, 448
BspANI GGCC 2 cut(s) 82, 351
BspCNI CTCAG 1 cut(s) 83
BspDI ATCGAT 1 cut(s) 390
BspMAI CTGCAG 1 cut(s) 97
BspMI ACCTGC 2 cut(s) 78, 335
BspQI GCTCTTC 1 cut(s) 457
BsrBI CCGCTC 3 cut(s) 11, 69, 450
BsrGI TGTACA 1 cut(s) 114
BsrI ACTGG 2 cut(s) 129, 462
BssMI GATC 4 cut(s) 32, 147, 387, 391
Bst2UI CCWGG 2 cut(s) 378, 499
Bst4CI ACNGT 2 cut(s) 39, 510
Bst6I CTCTTC 1 cut(s) 457
BstAPI GCANNNNNTGC 1 cut(s) 104
BstAUI TGTACA 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 70
BstF5I GGATG 1 cut(s) 53
BstKTI GATC 4 cut(s) 35, 150, 390, 394
BstMBI GATC 4 cut(s) 32, 147, 387, 391
BstMCI CGRYCG 1 cut(s) 83
BstMWI GCNNNNNNNGC 5 cut(s) 101, 104, 179, 210, 231
BstNI CCWGG 2 cut(s) 378, 499
BstSCI CCNGG 2 cut(s) 376, 497
BstSFI CTRYAG 1 cut(s) 93
BstV1I GCAGC 4 cut(s) 15, 91, 107, 317
BstZI CGGCCG 1 cut(s) 80
Bsu15I ATCGAT 1 cut(s) 390
BsuRI GGCC 2 cut(s) 82, 351
BsuTUI ATCGAT 1 cut(s) 390
BtsCI GGATG 1 cut(s) 53
BtsI GCAGTG 1 cut(s) 412
BtsIMutI CAGTG 3 cut(s) 412, 424, 455
BveI ACCTGC 2 cut(s) 78, 335
CaiI CAGNNNCTG 1 cut(s) 28
Cfr13I GGNCC 3 cut(s) 218, 278, 350
ClaI ATCGAT 1 cut(s) 390
Csp6I GTAC 1 cut(s) 115
CviAII CATG 2 cut(s) 99, 179
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 1 cut(s) 70
DpnI GATC 4 cut(s) 34, 149, 389, 393
DpnII GATC 4 cut(s) 32, 147, 387, 391
EaeI YGGCCR 1 cut(s) 80
EagI CGGCCG 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 457
EclXI CGGCCG 1 cut(s) 80
Eco47I GGWCC 2 cut(s) 218, 278
Eco52I CGGCCG 1 cut(s) 80
Eco57I CTGAAG 1 cut(s) 400
EcoO109I RGGNCCY 1 cut(s) 350
EcoRII CCWGG 2 cut(s) 376, 497
FaeI CATG 2 cut(s) 102, 182
FaiI YATR 6 cut(s) 100, 180, 276, 368, 383, 473
FalI AAGNNNNNCTT 4 cut(s) 157, 189, 294, 326
FatI CATG 2 cut(s) 98, 178
FblI GTMKAC 1 cut(s) 323
Fnu4HI GCNGC 6 cut(s) 12, 29, 96, 105, 331, 448
FokI GGATG 1 cut(s) 40
Fsp4HI GCNGC 6 cut(s) 12, 29, 96, 105, 331, 448
FspBI CTAG 2 cut(s) 108, 347
GluI GCNGC 6 cut(s) 12, 29, 96, 105, 331, 448
HaeIII GGCC 2 cut(s) 82, 351
Hin1II CATG 2 cut(s) 102, 182
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 1 cut(s) 257
Hpy166II GTNNAC 3 cut(s) 117, 271, 324
Hpy188I TCNGA 1 cut(s) 506
Hpy188III TCNNGA 6 cut(s) 42, 145, 298, 395, 428, 464
Hpy8I GTNNAC 3 cut(s) 117, 271, 324
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 2 cut(s) 39, 510
HpyCH4V TGCA 3 cut(s) 87, 95, 405
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 104, 179, 210, 231
HpyF3I CTNAG 1 cut(s) 70
Hsp92II CATG 2 cut(s) 102, 182
Kzo9I GATC 4 cut(s) 32, 147, 387, 391
LguI GCTCTTC 1 cut(s) 457
Lsp1109I GCAGC 4 cut(s) 15, 91, 107, 317
LweI GCATC 2 cut(s) 62, 420
MaeI CTAG 2 cut(s) 108, 347
MaeIII GTNAC 1 cut(s) 464
MalI GATC 4 cut(s) 34, 149, 389, 393
MbiI CCGCTC 3 cut(s) 11, 69, 450
MboI GATC 4 cut(s) 32, 147, 387, 391
MboII GAAGA 6 cut(s) 147, 206, 257, 397, 406, 444
MluCI AATT 2 cut(s) 151, 237
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 2 cut(s) 59, 67
MspR9I CCNGG 2 cut(s) 378, 499
MvaI CCWGG 2 cut(s) 378, 499
MwoI GCNNNNNNNGC 5 cut(s) 101, 104, 179, 210, 231
NdeII GATC 4 cut(s) 32, 147, 387, 391
NlaIII CATG 2 cut(s) 102, 182
NmuCI GTSAC 1 cut(s) 464
PciSI GCTCTTC 1 cut(s) 457
PkrI GCNGC 6 cut(s) 13, 30, 97, 106, 332, 449
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
Psp6I CCWGG 2 cut(s) 376, 497
PspGI CCWGG 2 cut(s) 376, 497
PspPI GGNCC 3 cut(s) 218, 278, 350
PstI CTGCAG 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 28
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SalI GTCGAC 1 cut(s) 322
SapI GCTCTTC 1 cut(s) 457
SatI GCNGC 6 cut(s) 12, 29, 96, 105, 331, 448
Sau3AI GATC 4 cut(s) 32, 147, 387, 391
Sau96I GGNCC 3 cut(s) 218, 278, 350
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 378, 499
SetI ASST 7 cut(s) 51, 65, 76, 92, 329, 365, 487
SfaNI GCATC 2 cut(s) 62, 420
SfcI CTRYAG 1 cut(s) 93
SinI GGWCC 2 cut(s) 218, 278
SmlI CTYRAG 3 cut(s) 58, 428, 486
SmoI CTYRAG 3 cut(s) 58, 428, 486
Sse9I AATT 2 cut(s) 151, 237
SsiI CCGC 3 cut(s) 11, 67, 448
SspMI CTAG 2 cut(s) 108, 347
StyD4I CCNGG 2 cut(s) 376, 497
TaaI ACNGT 2 cut(s) 39, 510
TaqI TCGA 3 cut(s) 144, 323, 390
TasI AATT 2 cut(s) 151, 237
TatI WGTACW 1 cut(s) 114
TauI GCSGC 2 cut(s) 14, 450
TscAI CASTG 3 cut(s) 412, 424, 462
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 4 cut(s) 28, 95, 104, 330
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 2 cut(s) 264, 398
TspRI CASTG 3 cut(s) 412, 424, 462
VpaK11BI GGWCC 2 cut(s) 218, 278
XmiI GTMKAC 1 cut(s) 323
XspI CTAG 2 cut(s) 108, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.