Prupe.2G217200_v2.0.a1

Assembly, mitochondrial proton-transport ATP synth complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0012541
Physical Location & Seq
Forward (+)
24725397 .. 24727719
2323 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G217200.1

Sequence Viewer

Length: 726 bp
ATGACGAGGGCGGCTCTCTTTCACTTACTGCGATCACAGTCCAAGCAACTCGCATCCTCAAACTTGCTTTCAGGATATCAACCTTGTAGGTCTGGAGCCTGGGCACTTGGCCTGAACACCAAATCCGGTTTCAACTCTGGCTTTGATATCAATGCTTCCCAGAAAAGATGGGCTTCTCATGCCACAACAAAAGAGGATGATGGGAAAATCAGCATTGGACCACGTAGAGGTGGCGAAGTTGGGGAAGATGGAAAAGACTCTGGGGTTGTCTATTATGGTCCGATCTCATCTACTATAAAGAAAGTGAAACTTCTCTCGCTTTCAACCTGCTGCCTTTCTGTCTCTTTAGGCCCAGTGATAACCTTTATGACATCTCCGGGTATGAATGTGATCTTGAAAGGTGCTGTGGCATCTTCAGTGATATTCTTGAGTGCTTCTACCACAGCTGCCCTTCACTGGTTCGTGACCCCATACATCCACAAGCTGAGATGGAAGCCTGGTTCAGACAGTTTTGAGGTGGAAATGTTGTCATGGCTTGCAACATACATTCCAAGGACCATTAAGTTTTCTGATATCCGGCCAGCAGAAACCAATAGGCCTTTTGTGACTTTTAAGGCCAATGGAAACTTTTACTTCGTCGACCCTGATCATTGCCATAACAAGGCTTTGCTAGCAAGACTGACTCCACAGAAAGCAACTCAAGAATCAGCTTTTAAGAATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM70

Protein Analysis

242

Amino Acids

26.37

Weight (kDa)

9.7

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35790
fragaria_vesca FvH4_7g20020
malus_domestica MD01G1111700.v1.1 MD07G1177900.v1.1
prunus_persica Prupe.2G217200_v2.0.a1 Prupe.2G217200_v2.0.a1
pyrus_communis pycom01g13890 pycom07g17170 pycom07g17180
rosa_chinensis RchiOBHm_Chr1g0363981
rosa_laevigata RLG00000027531
rosa_multiflora Rmu_sc0001607.1_g000014 Rmu_ssc0000167.1_g000025
rosa_roxburghii Rroxscaffold_4G00292790
rosa_rugosa Rorug01G0311700 Rorug01G0311800
rosa_samantha Rh1BG282700 Rh1DG314100
rosa_wichuraiana Rw1G028330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 335
AccI GTMKAC 1 cut(s) 639
AciI CCGC 1 cut(s) 11
AcoI YGGCCR 1 cut(s) 578
AcsI RAATTY 1 cut(s) 718
AcuI CTGAAG 1 cut(s) 399
AfiI CCNNNNNNNGG 3 cut(s) 227, 456, 661
AgsI TTSAA 3 cut(s) 133, 324, 397
AjnI CCWGG 2 cut(s) 98, 496
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AloI GAACNNNNNNTCC 4 cut(s) 107, 139, 484, 516
AluBI AGCT 3 cut(s) 446, 484, 710
AluI AGCT 3 cut(s) 446, 484, 710
Alw26I GTCTC 1 cut(s) 346
AoxI GGCC 5 cut(s) 109, 349, 578, 596, 615
ApeKI GCWGC 2 cut(s) 330, 446
ApoI RAATTY 1 cut(s) 718
AspS9I GGNCC 4 cut(s) 218, 278, 350, 555
AsuC2I CCSGG 1 cut(s) 378
AsuNHI GCTAGC 1 cut(s) 670
AvaII GGWCC 3 cut(s) 218, 278, 555
BaeGI GKGCMC 1 cut(s) 106
BbvI GCAGC 2 cut(s) 317, 433
BccI CCATC 4 cut(s) 162, 194, 242, 483
BciT130I CCWGG 2 cut(s) 100, 498
BclI TGATCA 1 cut(s) 646
BcnI CCSGG 1 cut(s) 378
BcoDI GTCTC 1 cut(s) 346
BfaI CTAG 1 cut(s) 671
BfuAI ACCTGC 1 cut(s) 335
BisI GCNGC 3 cut(s) 12, 331, 447
BlsI GCNGC 3 cut(s) 13, 332, 448
Bme1390I CCNGG 3 cut(s) 100, 378, 498
Bme18I GGWCC 3 cut(s) 218, 278, 555
BmgT120I GGNCC 4 cut(s) 218, 278, 350, 555
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 3 cut(s) 100, 378, 498
BmrI ACTGGG 1 cut(s) 347
BmsI GCATC 2 cut(s) 62, 419
BmtI GCTAGC 1 cut(s) 674
BmuI ACTGGG 1 cut(s) 347
BplI GAGNNNNNCTC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 114
BpuEI CTTGAG 2 cut(s) 448, 684
BpuMI CCSGG 1 cut(s) 378
BsaAI YACGTR 1 cut(s) 224
BsaJI CCNNGG 2 cut(s) 99, 551
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 3 cut(s) 227, 456, 661
Bse1I ACTGG 2 cut(s) 353, 461
Bse3DI GCAATG 1 cut(s) 649
BseBI CCWGG 2 cut(s) 100, 498
BseDI CCNNGG 2 cut(s) 99, 551
BseGI GGATG 3 cut(s) 53, 202, 474
BseLI CCNNNNNNNGG 3 cut(s) 227, 456, 661
BseMI GCAATG 1 cut(s) 649
BseMII CTCAG 1 cut(s) 476
BseNI ACTGG 2 cut(s) 353, 461
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 2 cut(s) 317, 433
BshFI GGCC 5 cut(s) 111, 351, 580, 598, 617
BsiSI CCGG 3 cut(s) 126, 377, 577
BslI CCNNNNNNNGG 3 cut(s) 227, 456, 661
BsmAI GTCTC 1 cut(s) 346
BsnI GGCC 5 cut(s) 111, 351, 580, 598, 617
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 4 cut(s) 32, 282, 390, 646
BspACI CCGC 1 cut(s) 11
BspANI GGCC 5 cut(s) 111, 351, 580, 598, 617
BspCNI CTCAG 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 97
BspMI ACCTGC 1 cut(s) 335
BspOI GCTAGC 1 cut(s) 674
BsrDI GCAATG 1 cut(s) 649
BsrI ACTGG 2 cut(s) 353, 461
BssECI CCNNGG 2 cut(s) 99, 551
BssMI GATC 4 cut(s) 32, 282, 390, 646
BssT1I CCWWGG 1 cut(s) 551
Bst2UI CCWGG 2 cut(s) 100, 498
Bst4CI ACNGT 2 cut(s) 39, 509
BstBAI YACGTR 1 cut(s) 224
BstC8I GCNNGC 3 cut(s) 537, 582, 672
BstDEI CTNAG 1 cut(s) 485
BstF5I GGATG 3 cut(s) 53, 202, 474
BstKTI GATC 4 cut(s) 35, 285, 393, 649
BstMAI GTCTC 1 cut(s) 346
BstMBI GATC 4 cut(s) 32, 282, 390, 646
BstMWI GCNNNNNNNGC 2 cut(s) 179, 671
BstNI CCWGG 2 cut(s) 100, 498
BstSCI CCNGG 3 cut(s) 98, 376, 496
BstSLI GKGCMC 1 cut(s) 106
BstV1I GCAGC 2 cut(s) 317, 433
BsuRI GGCC 5 cut(s) 111, 351, 580, 598, 617
BtsCI GGATG 3 cut(s) 53, 202, 474
BtsIMutI CAGTG 3 cut(s) 360, 423, 454
BveI ACCTGC 1 cut(s) 335
Cac8I GCNNGC 3 cut(s) 537, 582, 672
Cfr13I GGNCC 4 cut(s) 218, 278, 350, 555
CviAII CATG 2 cut(s) 179, 531
DdeI CTNAG 1 cut(s) 485
DpnI GATC 4 cut(s) 34, 284, 392, 648
DpnII GATC 4 cut(s) 32, 282, 390, 646
EaeI YGGCCR 1 cut(s) 578
Eco130I CCWWGG 1 cut(s) 551
Eco147I AGGCCT 1 cut(s) 598
Eco32I GATATC 3 cut(s) 77, 148, 574
Eco47I GGWCC 3 cut(s) 218, 278, 555
Eco57I CTGAAG 1 cut(s) 399
EcoRII CCWGG 2 cut(s) 98, 496
EcoRV GATATC 3 cut(s) 77, 148, 574
EcoT14I CCWWGG 1 cut(s) 551
ErhI CCWWGG 1 cut(s) 551
FaeI CATG 2 cut(s) 182, 534
FalI AAGNNNNNCTT 4 cut(s) 157, 189, 294, 326
FatI CATG 2 cut(s) 178, 530
FbaI TGATCA 1 cut(s) 646
FblI GTMKAC 1 cut(s) 639
Fnu4HI GCNGC 3 cut(s) 12, 331, 447
FokI GGATG 3 cut(s) 40, 209, 461
Fsp4HI GCNGC 3 cut(s) 12, 331, 447
FspBI CTAG 1 cut(s) 671
GluI GCNGC 3 cut(s) 12, 331, 447
GsuI CTGGAG 1 cut(s) 114
HaeIII GGCC 5 cut(s) 111, 351, 580, 598, 617
HapII CCGG 3 cut(s) 126, 377, 577
Hin1II CATG 2 cut(s) 182, 534
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HinfI GANTC 3 cut(s) 257, 682, 704
HpaII CCGG 3 cut(s) 126, 377, 577
Hpy166II GTNNAC 1 cut(s) 640
Hpy188I TCNGA 3 cut(s) 282, 505, 571
Hpy188III TCNNGA 6 cut(s) 72, 93, 394, 427, 463, 701
Hpy8I GTNNAC 1 cut(s) 640
Hpy99I CGWCG 1 cut(s) 641
HpyAV CCTTC 1 cut(s) 461
HpyCH4III ACNGT 2 cut(s) 39, 509
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 671
HpyF3I CTNAG 1 cut(s) 485
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 2 cut(s) 182, 534
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 4 cut(s) 32, 282, 390, 646
LmnI GCTCC 1 cut(s) 95
Lsp1109I GCAGC 2 cut(s) 317, 433
LweI GCATC 2 cut(s) 62, 419
MaeI CTAG 1 cut(s) 671
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 2 cut(s) 463, 604
MalI GATC 4 cut(s) 34, 284, 392, 648
MboI GATC 4 cut(s) 32, 282, 390, 646
MboII GAAGA 2 cut(s) 257, 405
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 1 cut(s) 718
MlyI GAGTC 2 cut(s) 251, 676
MnlI CCTC 4 cut(s) 67, 187, 221, 508
MseI TTAA 3 cut(s) 561, 612, 714
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 3 cut(s) 126, 377, 577
MspR9I CCNGG 3 cut(s) 100, 378, 498
MvaI CCWGG 2 cut(s) 100, 498
MwoI GCNNNNNNNGC 2 cut(s) 179, 671
NciI CCSGG 1 cut(s) 378
NdeII GATC 4 cut(s) 32, 282, 390, 646
NheI GCTAGC 1 cut(s) 670
NlaIII CATG 2 cut(s) 182, 534
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 2 cut(s) 463, 604
PceI AGGCCT 1 cut(s) 598
PfeI GAWTC 1 cut(s) 704
PkrI GCNGC 3 cut(s) 13, 332, 448
PleI GAGTC 2 cut(s) 251, 676
PpsI GAGTC 2 cut(s) 251, 676
Ppu21I YACGTR 1 cut(s) 224
Psp6I CCWGG 2 cut(s) 98, 496
PspGI CCWGG 2 cut(s) 98, 496
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 4 cut(s) 218, 278, 350, 555
PvuII CAGCTG 1 cut(s) 446
SalI GTCGAC 1 cut(s) 638
SaqAI TTAA 3 cut(s) 561, 612, 714
SatI GCNGC 3 cut(s) 12, 331, 447
Sau3AI GATC 4 cut(s) 32, 282, 390, 646
Sau96I GGNCC 4 cut(s) 218, 278, 350, 555
SchI GAGTC 2 cut(s) 251, 676
ScrFI CCNGG 3 cut(s) 100, 378, 498
SduI GDGCHC 1 cut(s) 106
SfaNI GCATC 2 cut(s) 62, 419
SinI GGWCC 3 cut(s) 218, 278, 555
SmlI CTYRAG 2 cut(s) 427, 699
SmoI CTYRAG 2 cut(s) 427, 699
Sse9I AATT 1 cut(s) 718
SseBI AGGCCT 1 cut(s) 598
SsiI CCGC 1 cut(s) 11
SspMI CTAG 1 cut(s) 671
StuI AGGCCT 1 cut(s) 598
StyD4I CCNGG 3 cut(s) 98, 376, 496
StyI CCWWGG 1 cut(s) 551
TaaI ACNGT 2 cut(s) 39, 509
TaiI ACGT 1 cut(s) 226
TaqI TCGA 1 cut(s) 639
TasI AATT 1 cut(s) 718
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 704
Tru1I TTAA 3 cut(s) 561, 612, 714
Tru9I TTAA 3 cut(s) 561, 612, 714
TscAI CASTG 3 cut(s) 360, 423, 461
TseFI GTSAC 2 cut(s) 463, 604
TseI GCWGC 2 cut(s) 330, 446
Tsp45I GTSAC 2 cut(s) 463, 604
TspDTI ATGAA 1 cut(s) 398
TspRI CASTG 3 cut(s) 360, 423, 461
VpaK11BI GGWCC 3 cut(s) 218, 278, 555
XapI RAATTY 1 cut(s) 718
XmiI GTMKAC 1 cut(s) 639
XspI CTAG 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.