Rroxscaffold_4G00292800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016924
Physical Location & Seq
Forward (+)
13014447 .. 13015043
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00292800.1

Sequence Viewer

Length: 597 bp
ATGGAGTCTCACAACCCTCATTTTGAAGCTCCGGTACAAGACTCTGGTTTTGCATTTGAACAAGTCGACCAAGAAGAAGACGCACTTTCTCTTTGTGATCTCCCATTGCATGAAAACAGCGAAGAAGAAAGCCCGGGCTTAGTTTCCGAGCCGGAAGACTTCTTCGAATTCGCTGTCGACCCTGTCTATGGCTACTACCCAATGGACATAGTCTTCTGCGGAAAATCCATCCCTTGCTCGAAGCCAATGAACAAACAATTTGGCTCCAGATGCGAGTCCTTCAAACTAGGACATTGTCCCAGTTCTCAATCTCACGTGATTCAACAACAGAGGAGCCTGAAATCCAAGTCTAGCAACTCACATAAGCACTTGATAGGGCTGGTGAAGTACCACCAGCAGGAGATGGACCTAAACGAGATAAGAAAGCGACAAGGCAGGCGAGCTCCGGTGGCAATGTTTCCTGTGAACGGCGGGGAGAAACCGGAAGTGAAGAACGAAGGCAAAGGGCACTCGGGTGTGATGAGACCGCTGAGGTGTCGGTCACACTTACTAAGCGCGTTGGCTAAGGCGGCTCTAGGTTGCATACCTCATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.14

Weight (kDa)

6.25

Isoelectric Point (pI)

59.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016924)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g20010
malus_domestica MD01G1111500.v1.1 MD07G1177700.v1.1
prunus_persica Prupe.2G217100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0363961
rosa_laevigata RLG00000027532
rosa_multiflora Rmu_ssc0000167.1_g000035
rosa_roxburghii Rroxscaffold_4G00292800
rosa_rugosa Rorug01G0311700
rosa_samantha Rh1AG319500 Rh1BG282600 Rh1CG299000 Rh1DG314000
rosa_wichuraiana Rw1G028320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 66, 177
AccII CGCG 1 cut(s) 557
AciI CCGC 4 cut(s) 219, 471, 527, 569
AcsI RAATTY 1 cut(s) 167
AcvI CACGTG 1 cut(s) 316
AfaI GTAC 2 cut(s) 36, 389
AfiI CCNNNNNNNGG 3 cut(s) 188, 397, 467
AgsI TTSAA 4 cut(s) 26, 59, 283, 323
AleI CACNNNNGTG 1 cut(s) 513
AluBI AGCT 2 cut(s) 29, 443
AluI AGCT 2 cut(s) 29, 443
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 2 cut(s) 12, 517
Ama87I CYCGRG 2 cut(s) 133, 511
ApoI RAATTY 1 cut(s) 167
ArsI GACNNNNNNTTYG 4 cut(s) 32, 64, 159, 191
AspLEI GCGC 1 cut(s) 557
AspS9I GGNCC 1 cut(s) 406
AsuC2I CCSGG 2 cut(s) 134, 135
AsuHPI GGTGA 1 cut(s) 394
AsuII TTCGAA 1 cut(s) 165
AvaI CYCGRG 2 cut(s) 133, 511
AvaII GGWCC 1 cut(s) 406
BaeGI GKGCMC 1 cut(s) 510
BanII GRGCYC 1 cut(s) 445
BarI GAAGNNNNNNTAC 2 cut(s) 18, 50
BbrPI CACGTG 1 cut(s) 316
BbsI GAAGAC 3 cut(s) 84, 162, 205
Bbv12I GWGCWC 1 cut(s) 445
BbvCI CCTCAGC 1 cut(s) 530
BccI CCATC 2 cut(s) 236, 397
BceAI ACGGC 1 cut(s) 484
BcnI CCSGG 2 cut(s) 134, 135
BcoDI GTCTC 2 cut(s) 12, 517
BfaI CTAG 3 cut(s) 287, 351, 575
BisI GCNGC 1 cut(s) 570
BlsI GCNGC 1 cut(s) 571
Bme1390I CCNGG 2 cut(s) 134, 135
Bme18I GGWCC 1 cut(s) 406
BmeT110I CYCGRG 2 cut(s) 133, 511
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 2 cut(s) 265, 335
BmrFI CCNGG 2 cut(s) 134, 135
BmrI ACTGGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 260
BmuI ACTGGG 1 cut(s) 294
BpiI GAAGAC 3 cut(s) 84, 162, 205
BpmI CTGGAG 1 cut(s) 250
Bpu10I CCTNAGC 2 cut(s) 530, 564
Bpu14I TTCGAA 1 cut(s) 165
BpuMI CCSGG 2 cut(s) 134, 135
BsaAI YACGTR 1 cut(s) 316
BsaI GGTCTC 1 cut(s) 517
BsaJI CCNNGG 1 cut(s) 133
BsaWI WCCGGW 3 cut(s) 31, 445, 481
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 397, 467
Bse1I ACTGG 1 cut(s) 300
Bse3DI GCAATG 2 cut(s) 104, 459
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 228
BseLI CCNNNNNNNGG 3 cut(s) 188, 397, 467
BseMI GCAATG 2 cut(s) 104, 459
BseMII CTCAG 1 cut(s) 521
BseNI ACTGG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 346
BseSI GKGCMC 1 cut(s) 510
Bsh1236I CGCG 1 cut(s) 557
BsiHKAI GWGCWC 1 cut(s) 445
BsiHKCI CYCGRG 2 cut(s) 133, 511
BsiSI CCGG 5 cut(s) 32, 134, 152, 446, 482
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 3 cut(s) 188, 397, 467
BsmAI GTCTC 2 cut(s) 12, 517
BsmFI GGGAC 1 cut(s) 282
Bso31I GGTCTC 1 cut(s) 517
BsoBI CYCGRG 2 cut(s) 133, 511
Bsp119I TTCGAA 1 cut(s) 165
Bsp1286I GDGCHC 2 cut(s) 445, 510
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 4 cut(s) 219, 471, 527, 569
BspCNI CTCAG 1 cut(s) 522
BspFNI CGCG 1 cut(s) 557
BspLI GGNNCC 2 cut(s) 265, 335
BspT104I TTCGAA 1 cut(s) 165
BspTNI GGTCTC 1 cut(s) 517
BsrDI GCAATG 2 cut(s) 104, 459
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 1 cut(s) 97
BstBAI YACGTR 1 cut(s) 316
BstBI TTCGAA 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 437, 441
BstDEI CTNAG 4 cut(s) 139, 530, 551, 564
BstF5I GGATG 1 cut(s) 228
BstFNI CGCG 1 cut(s) 557
BstHHI GCGC 1 cut(s) 557
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 2 cut(s) 12, 517
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 3 cut(s) 270, 449, 569
BstSCI CCNGG 2 cut(s) 132, 133
BstSLI GKGCMC 1 cut(s) 510
BstUI CGCG 1 cut(s) 557
BstV2I GAAGAC 3 cut(s) 84, 162, 205
BtsCI GGATG 1 cut(s) 228
Cac8I GCNNGC 2 cut(s) 437, 441
CfoI GCGC 1 cut(s) 557
Cfr13I GGNCC 1 cut(s) 406
Cfr9I CCCGGG 1 cut(s) 133
CseI GACGC 1 cut(s) 89
Csp6I GTAC 2 cut(s) 35, 388
CviAII CATG 2 cut(s) 110, 590
CviQI GTAC 2 cut(s) 35, 388
DdeI CTNAG 4 cut(s) 139, 530, 551, 564
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 443
Eco24I GRGCYC 1 cut(s) 445
Eco31I GGTCTC 1 cut(s) 517
Eco47I GGWCC 1 cut(s) 406
Eco53kI GAGCTC 1 cut(s) 443
Eco72I CACGTG 1 cut(s) 316
Eco88I CYCGRG 2 cut(s) 133, 511
EcoICRI GAGCTC 1 cut(s) 443
EcoRI GAATTC 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 445
FaeI CATG 2 cut(s) 113, 593
FaiI YATR 6 cut(s) 111, 189, 209, 363, 584, 591
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FaqI GGGAC 1 cut(s) 282
FatI CATG 2 cut(s) 109, 589
FauI CCCGC 1 cut(s) 464
FblI GTMKAC 2 cut(s) 66, 177
Fnu4HI GCNGC 1 cut(s) 570
FokI GGATG 1 cut(s) 215
FriOI GRGCYC 1 cut(s) 445
Fsp4HI GCNGC 1 cut(s) 570
FspBI CTAG 3 cut(s) 287, 351, 575
GlaI GCGC 1 cut(s) 556
GluI GCNGC 1 cut(s) 570
GsuI CTGGAG 1 cut(s) 250
HapII CCGG 5 cut(s) 32, 134, 152, 446, 482
HgaI GACGC 1 cut(s) 89
HhaI GCGC 1 cut(s) 557
Hin1II CATG 2 cut(s) 113, 593
Hin6I GCGC 1 cut(s) 555
HinP1I GCGC 1 cut(s) 555
HincII GTYRAC 2 cut(s) 67, 178
HindII GTYRAC 2 cut(s) 67, 178
HinfI GANTC 4 cut(s) 5, 41, 275, 319
HpaII CCGG 5 cut(s) 32, 134, 152, 446, 482
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 3 cut(s) 67, 178, 466
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 267
Hpy8I GTNNAC 3 cut(s) 67, 178, 466
HpyAV CCTTC 2 cut(s) 289, 491
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 3 cut(s) 53, 109, 582
HpyF10VI GCNNNNNNNGC 3 cut(s) 270, 449, 569
HpyF3I CTNAG 4 cut(s) 139, 530, 551, 564
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 2 cut(s) 113, 593
HspAI GCGC 1 cut(s) 555
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 4 cut(s) 34, 269, 333, 448
LweI GCATC 1 cut(s) 260
MaeI CTAG 3 cut(s) 287, 351, 575
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 540
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 8 cut(s) 86, 89, 134, 137, 154, 167, 205, 502
MhlI GDGCHC 2 cut(s) 445, 510
MluCI AATT 2 cut(s) 167, 257
MlyI GAGTC 3 cut(s) 14, 35, 284
MnlI CCTC 4 cut(s) 27, 324, 525, 597
MslI CAYNNNNRTG 1 cut(s) 513
MspA1I CMGCKG 1 cut(s) 529
MspI CCGG 5 cut(s) 32, 134, 152, 446, 482
MspR9I CCNGG 2 cut(s) 134, 135
MvnI CGCG 1 cut(s) 557
MwoI GCNNNNNNNGC 3 cut(s) 270, 449, 569
NciI CCSGG 2 cut(s) 134, 135
NdeII GATC 1 cut(s) 97
NlaIII CATG 2 cut(s) 113, 593
NlaIV GGNNCC 2 cut(s) 265, 335
NmuCI GTSAC 1 cut(s) 540
NspV TTCGAA 1 cut(s) 165
OliI CACNNNNGTG 1 cut(s) 513
PfeI GAWTC 1 cut(s) 319
PflFI GACNNNGTC 3 cut(s) 182, 209, 294
PkrI GCNGC 1 cut(s) 571
PleI GAGTC 3 cut(s) 13, 35, 283
PmaCI CACGTG 1 cut(s) 316
PmlI CACGTG 1 cut(s) 316
PpsI GAGTC 3 cut(s) 13, 35, 283
Ppu21I YACGTR 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 445
PspCI CACGTG 1 cut(s) 316
PspN4I GGNNCC 2 cut(s) 265, 335
PspPI GGNCC 1 cut(s) 406
PsyI GACNNNGTC 3 cut(s) 182, 209, 294
RsaI GTAC 2 cut(s) 36, 389
RsaNI GTAC 2 cut(s) 35, 388
RseI CAYNNNNRTG 1 cut(s) 513
SacI GAGCTC 1 cut(s) 445
SalI GTCGAC 2 cut(s) 65, 176
SatI GCNGC 1 cut(s) 570
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 406
SchI GAGTC 3 cut(s) 14, 35, 284
ScrFI CCNGG 2 cut(s) 134, 135
SduI GDGCHC 2 cut(s) 445, 510
SetI ASST 7 cut(s) 31, 318, 411, 445, 536, 580, 589
SfaNI GCATC 1 cut(s) 260
SfuI TTCGAA 1 cut(s) 165
SinI GGWCC 1 cut(s) 406
SmaI CCCGGG 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 513
SrfI GCCCGGGC 1 cut(s) 135
Sse9I AATT 2 cut(s) 167, 257
SsiI CCGC 4 cut(s) 219, 471, 527, 569
SspMI CTAG 3 cut(s) 287, 351, 575
SstI GAGCTC 1 cut(s) 445
StyD4I CCNGG 2 cut(s) 132, 133
TaiI ACGT 1 cut(s) 318
TaqI TCGA 4 cut(s) 66, 165, 177, 239
TaqII GACCGA 1 cut(s) 528
TasI AATT 2 cut(s) 167, 257
TauI GCSGC 1 cut(s) 572
TfiI GAWTC 1 cut(s) 319
TseFI GTSAC 1 cut(s) 540
Tsp45I GTSAC 1 cut(s) 540
TspDTI ATGAA 2 cut(s) 126, 263
TspMI CCCGGG 1 cut(s) 133
Tth111I GACNNNGTC 3 cut(s) 182, 209, 294
VpaK11BI GGWCC 1 cut(s) 406
XapI RAATTY 1 cut(s) 167
XmaI CCCGGG 1 cut(s) 133
XmiI GTMKAC 2 cut(s) 66, 177
XspI CTAG 3 cut(s) 287, 351, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.