Prupe.2G217100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016924
Physical Location & Seq
Reverse (-)
24724424 .. 24725062
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G217100.1

Sequence Viewer

Length: 639 bp
ATGGAAAACTTCTCTGATTTTGAACAACAACAAGGGGTTGAAGAAGATGCACTCTCTCTTTGTGATCTGTTACTCAATGATGATGGTGATGAATCAGTAGAAATCCCAAAAGCCTCTCCTTCTTCTGACCCAGCAGACTTCTTTGAATTCTGCGTCGACCCAATCTGTGGGTATCTCCCCATGGACGTTGTTTTCTGCGGAAAGTCCATACTTTGCTCAAAACCCATCACCCTTCCAACCCCAGAGTCAGAGCCTCAAATCAAGAACCCATTTTTCTCCAGATCCGAATCTCTCAGATTCTCACAGGCCTCTGCCTCTCCAGCTCGTTCGGATCTGGTACCGACAACCGGGAAATGCCGGTCGCCGTCGAGCAATTCCCGGAAGCACAAGGTGTTGATAGGGTTAGTGAAGTACCAGCCGGAGATGGACTTGAGTGAGATAAGGAAGCGGCAGAGTCGGCGCGCTCCGGCGCCCATGTTCCCGGTGATAAACGGTGGGGAGCAATCGGCTGTAACCGGTGGAAAGAGTGGGTCCGGGAAAGGGCACTGGGGTCTGATGAGACCGCTGAGGTGTCCGTCCCACCTGTTGAGCGCGTTGGCCAAGGCGACTCTTGGGTGTGTGCCACGTGTCACTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.02

Weight (kDa)

6.31

Isoelectric Point (pI)

64.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016924)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g20010
malus_domestica MD01G1111500.v1.1 MD07G1177700.v1.1
prunus_persica Prupe.2G217100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0363961
rosa_laevigata RLG00000027532
rosa_multiflora Rmu_ssc0000167.1_g000035
rosa_roxburghii Rroxscaffold_4G00292800
rosa_rugosa Rorug01G0311700
rosa_samantha Rh1AG319500 Rh1BG282600 Rh1CG299000 Rh1DG314000
rosa_wichuraiana Rw1G028320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 337
AccB1I GGYRCC 2 cut(s) 337, 469
AccB7I CCANNNNNTGG 1 cut(s) 167
AccI GTMKAC 1 cut(s) 156
AccII CGCG 2 cut(s) 462, 593
AciI CCGC 3 cut(s) 198, 448, 563
AclWI GGATC 2 cut(s) 276, 339
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 1 cut(s) 146
AcvI CACGTG 1 cut(s) 626
AcyI GRCGYC 1 cut(s) 470
AdeI CACNNNGTG 2 cut(s) 391, 636
AfaI GTAC 2 cut(s) 339, 413
AfiI CCNNNNNNNGG 3 cut(s) 167, 347, 540
AflIII ACRYGT 1 cut(s) 625
AgeI ACCGGT 1 cut(s) 515
AgsI TTSAA 3 cut(s) 23, 41, 146
AluBI AGCT 1 cut(s) 323
AluI AGCT 1 cut(s) 323
Alw26I GTCTC 1 cut(s) 553
AlwI GGATC 2 cut(s) 276, 339
AoxI GGCC 2 cut(s) 306, 597
ApoI RAATTY 1 cut(s) 146
AsiGI ACCGGT 1 cut(s) 515
Asp718I GGTACC 1 cut(s) 337
AspLEI GCGC 4 cut(s) 462, 464, 472, 593
AspS9I GGNCC 1 cut(s) 531
AsuC2I CCSGG 4 cut(s) 349, 379, 482, 535
AsuHPI GGTGA 3 cut(s) 98, 220, 496
AvaII GGWCC 1 cut(s) 531
BaeGI GKGCMC 1 cut(s) 546
BalI TGGCCA 1 cut(s) 599
BanI GGYRCC 2 cut(s) 337, 469
BbrPI CACGTG 1 cut(s) 626
BbvCI CCTCAGC 1 cut(s) 566
BccI CCATC 3 cut(s) 77, 233, 418
BceAI ACGGC 1 cut(s) 349
BcnI CCSGG 4 cut(s) 349, 379, 482, 535
BcoDI GTCTC 1 cut(s) 553
BfoI RGCGCY 1 cut(s) 473
BisI GCNGC 1 cut(s) 449
BlsI GCNGC 1 cut(s) 450
Bme1390I CCNGG 4 cut(s) 349, 379, 482, 535
Bme18I GGWCC 1 cut(s) 531
BmgT120I GGNCC 1 cut(s) 531
BmiI GGNNCC 3 cut(s) 339, 471, 532
BmrFI CCNGG 4 cut(s) 349, 379, 482, 535
BmrI ACTGGG 1 cut(s) 556
BmsI GCATC 1 cut(s) 37
BmuI ACTGGG 1 cut(s) 556
BpmI CTGGAG 2 cut(s) 262, 303
Bpu10I CCTNAGC 1 cut(s) 566
BpuEI CTTGAG 1 cut(s) 451
BpuMI CCSGG 4 cut(s) 349, 379, 482, 535
BsaAI YACGTR 1 cut(s) 626
BsaBI GATNNNNATC 1 cut(s) 286
BsaHI GRCGYC 1 cut(s) 470
BsaI GGTCTC 1 cut(s) 553
BsaJI CCNNGG 2 cut(s) 180, 600
BsaWI WCCGGW 1 cut(s) 515
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 347, 540
Bse118I RCCGGY 2 cut(s) 357, 515
Bse1I ACTGG 1 cut(s) 551
Bse8I GATNNNNATC 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 180, 600
BseJI GATNNNNATC 1 cut(s) 286
BseLI CCNNNNNNNGG 3 cut(s) 167, 347, 540
BseMII CTCAG 2 cut(s) 307, 557
BseNI ACTGG 1 cut(s) 551
BsePI GCGCGC 1 cut(s) 460
BseSI GKGCMC 1 cut(s) 546
BseYI CCCAGC 1 cut(s) 130
Bsh1236I CGCG 2 cut(s) 462, 593
Bsh1285I CGRYCG 1 cut(s) 362
BshFI GGCC 2 cut(s) 308, 599
BshNI GGYRCC 2 cut(s) 337, 469
BshTI ACCGGT 1 cut(s) 515
BsiEI CGRYCG 1 cut(s) 362
BsiSI CCGG 8 cut(s) 348, 358, 379, 419, 467, 482, 516, 534
BslFI GGGAC 1 cut(s) 562
BslI CCNNNNNNNGG 3 cut(s) 167, 347, 540
BsmAI GTCTC 1 cut(s) 553
BsmFI GGGAC 1 cut(s) 562
BsnI GGCC 2 cut(s) 308, 599
Bso31I GGTCTC 1 cut(s) 553
Bsp1286I GDGCHC 1 cut(s) 546
Bsp143I GATC 3 cut(s) 64, 281, 331
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 3 cut(s) 198, 448, 563
BspANI GGCC 2 cut(s) 308, 599
BspCNI CTCAG 2 cut(s) 306, 558
BspFNI CGCG 2 cut(s) 462, 593
BspLI GGNNCC 3 cut(s) 339, 471, 532
BspPI GGATC 2 cut(s) 276, 339
BspT107I GGYRCC 2 cut(s) 337, 469
BspTNI GGTCTC 1 cut(s) 553
BsrFI RCCGGY 2 cut(s) 357, 515
BsrI ACTGG 1 cut(s) 551
BssAI RCCGGY 2 cut(s) 357, 515
BssECI CCNNGG 2 cut(s) 180, 600
BssHII GCGCGC 1 cut(s) 460
BssMI GATC 3 cut(s) 64, 281, 331
BssNI GRCGYC 1 cut(s) 470
BssT1I CCWWGG 2 cut(s) 180, 600
Bst4CI ACNGT 2 cut(s) 494, 634
BstACI GRCGYC 1 cut(s) 470
BstBAI YACGTR 1 cut(s) 626
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 2 cut(s) 293, 566
BstDSI CCRYGG 1 cut(s) 180
BstFNI CGCG 2 cut(s) 462, 593
BstH2I RGCGCY 1 cut(s) 473
BstHHI GCGC 4 cut(s) 462, 464, 472, 593
BstKTI GATC 3 cut(s) 67, 284, 334
BstMAI GTCTC 1 cut(s) 553
BstMBI GATC 3 cut(s) 64, 281, 331
BstMCI CGRYCG 1 cut(s) 362
BstMWI GCNNNNNNNGC 2 cut(s) 320, 457
BstSCI CCNGG 4 cut(s) 347, 377, 480, 533
BstSLI GKGCMC 1 cut(s) 546
BstUI CGCG 2 cut(s) 462, 593
BstX2I RGATCY 2 cut(s) 281, 331
BstYI RGATCY 2 cut(s) 281, 331
BsuRI GGCC 2 cut(s) 308, 599
BtgI CCRYGG 1 cut(s) 180
BtsIMutI CAGTG 2 cut(s) 544, 630
Cac8I GCNNGC 1 cut(s) 462
CfoI GCGC 4 cut(s) 462, 464, 472, 593
Cfr10I RCCGGY 2 cut(s) 357, 515
Cfr13I GGNCC 1 cut(s) 531
CseI GACGC 1 cut(s) 142
Csp6I GTAC 2 cut(s) 338, 412
CspAI ACCGGT 1 cut(s) 515
CviAII CATG 2 cut(s) 181, 475
CviJI RGCY 7 cut(s) 113, 253, 308, 323, 418, 509, 599
CviKI_1 RGCY 7 cut(s) 113, 253, 308, 323, 418, 509, 599
CviQI GTAC 2 cut(s) 338, 412
DdeI CTNAG 2 cut(s) 293, 566
DinI GGCGCC 1 cut(s) 471
DpnI GATC 3 cut(s) 66, 283, 333
DpnII GATC 3 cut(s) 64, 281, 331
DraIII CACNNNGTG 2 cut(s) 391, 636
EaeI YGGCCR 1 cut(s) 597
Eco130I CCWWGG 2 cut(s) 180, 600
Eco147I AGGCCT 1 cut(s) 308
Eco31I GGTCTC 1 cut(s) 553
Eco47I GGWCC 1 cut(s) 531
Eco72I CACGTG 1 cut(s) 626
EcoRI GAATTC 1 cut(s) 146
EcoT14I CCWWGG 2 cut(s) 180, 600
EgeI GGCGCC 1 cut(s) 471
EheI GGCGCC 1 cut(s) 471
ErhI CCWWGG 2 cut(s) 180, 600
FaeI CATG 2 cut(s) 184, 478
FaiI YATR 3 cut(s) 182, 209, 476
FaqI GGGAC 1 cut(s) 562
FatI CATG 2 cut(s) 180, 474
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 449
Fsp4HI GCNGC 1 cut(s) 449
GlaI GCGC 4 cut(s) 461, 463, 471, 592
GluI GCNGC 1 cut(s) 449
GsaI CCCAGC 1 cut(s) 134
GsuI CTGGAG 2 cut(s) 262, 303
HaeII RGCGCY 1 cut(s) 473
HaeIII GGCC 2 cut(s) 308, 599
HapII CCGG 8 cut(s) 348, 358, 379, 419, 467, 482, 516, 534
HgaI GACGC 1 cut(s) 142
HhaI GCGC 4 cut(s) 462, 464, 472, 593
Hin1I GRCGYC 1 cut(s) 470
Hin1II CATG 2 cut(s) 184, 478
Hin6I GCGC 4 cut(s) 460, 462, 470, 591
HinP1I GCGC 4 cut(s) 460, 462, 470, 591
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 6 cut(s) 92, 245, 287, 297, 454, 607
HpaII CCGG 8 cut(s) 348, 358, 379, 419, 467, 482, 516, 534
HphI GGTGA 3 cut(s) 98, 220, 496
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 7 cut(s) 16, 127, 250, 286, 296, 331, 555
Hpy188III TCNNGA 2 cut(s) 262, 279
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 2 cut(s) 158, 370
HpyAV CCTTC 2 cut(s) 129, 242
HpyCH4III ACNGT 2 cut(s) 494, 634
HpyCH4IV ACGT 2 cut(s) 186, 625
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 457
HpyF3I CTNAG 2 cut(s) 293, 566
HpySE526I ACGT 2 cut(s) 186, 625
Hsp92I GRCGYC 1 cut(s) 470
Hsp92II CATG 2 cut(s) 184, 478
HspAI GCGC 4 cut(s) 460, 462, 470, 591
KasI GGCGCC 1 cut(s) 469
KpnI GGTACC 1 cut(s) 341
Kzo9I GATC 3 cut(s) 64, 281, 331
LmnI GCTCC 2 cut(s) 469, 499
LweI GCATC 1 cut(s) 37
MaeII ACGT 2 cut(s) 186, 625
MaeIII GTNAC 3 cut(s) 69, 511, 628
MalI GATC 3 cut(s) 66, 283, 333
MboI GATC 3 cut(s) 64, 281, 331
MboII GAAGA 3 cut(s) 53, 56, 114
MflI RGATCY 2 cut(s) 281, 331
MhlI GDGCHC 1 cut(s) 546
MlsI TGGCCA 1 cut(s) 599
MluCI AATT 2 cut(s) 146, 373
MluNI TGGCCA 1 cut(s) 599
Mly113I GGCGCC 1 cut(s) 470
MlyI GAGTC 3 cut(s) 254, 463, 601
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 5 cut(s) 124, 264, 319, 325, 561
Mox20I TGGCCA 1 cut(s) 599
MscI TGGCCA 1 cut(s) 599
Msp20I TGGCCA 1 cut(s) 599
MspA1I CMGCKG 1 cut(s) 565
MspI CCGG 8 cut(s) 348, 358, 379, 419, 467, 482, 516, 534
MspR9I CCNGG 4 cut(s) 349, 379, 482, 535
MvnI CGCG 2 cut(s) 462, 593
MwoI GCNNNNNNNGC 2 cut(s) 320, 457
NarI GGCGCC 1 cut(s) 470
NciI CCSGG 4 cut(s) 349, 379, 482, 535
NcoI CCATGG 1 cut(s) 180
NdeII GATC 3 cut(s) 64, 281, 331
NlaIII CATG 2 cut(s) 184, 478
NlaIV GGNNCC 3 cut(s) 339, 471, 532
NmuCI GTSAC 1 cut(s) 628
PauI GCGCGC 1 cut(s) 460
PceI AGGCCT 1 cut(s) 308
PfeI GAWTC 3 cut(s) 92, 287, 297
PflMI CCANNNNNTGG 1 cut(s) 167
PfoI TCCNGGA 2 cut(s) 377, 533
PinAI ACCGGT 1 cut(s) 515
PkrI GCNGC 1 cut(s) 450
PleI GAGTC 3 cut(s) 253, 462, 601
PluTI GGCGCC 1 cut(s) 473
PmaCI CACGTG 1 cut(s) 626
PmlI CACGTG 1 cut(s) 626
PpsI GAGTC 3 cut(s) 253, 462, 601
Ppu21I YACGTR 1 cut(s) 626
PspCI CACGTG 1 cut(s) 626
PspFI CCCAGC 1 cut(s) 130
PspN4I GGNNCC 3 cut(s) 339, 471, 532
PspPI GGNCC 1 cut(s) 531
PsuI RGATCY 2 cut(s) 281, 331
PteI GCGCGC 1 cut(s) 460
RsaI GTAC 2 cut(s) 339, 413
RsaNI GTAC 2 cut(s) 338, 412
SalI GTCGAC 1 cut(s) 155
SatI GCNGC 1 cut(s) 449
Sau3AI GATC 3 cut(s) 64, 281, 331
Sau96I GGNCC 1 cut(s) 531
SchI GAGTC 3 cut(s) 254, 463, 601
ScrFI CCNGG 4 cut(s) 349, 379, 482, 535
SduI GDGCHC 1 cut(s) 546
SetI ASST 6 cut(s) 189, 325, 393, 572, 585, 628
SfaNI GCATC 1 cut(s) 37
SfoI GGCGCC 1 cut(s) 471
SinI GGWCC 1 cut(s) 531
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
Sse9I AATT 2 cut(s) 146, 373
SseBI AGGCCT 1 cut(s) 308
SsiI CCGC 3 cut(s) 198, 448, 563
SspDI GGCGCC 1 cut(s) 469
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 4 cut(s) 347, 377, 480, 533
StyI CCWWGG 2 cut(s) 180, 600
TaaI ACNGT 2 cut(s) 494, 634
TaiI ACGT 2 cut(s) 189, 628
TaqI TCGA 2 cut(s) 156, 368
TasI AATT 2 cut(s) 146, 373
TauI GCSGC 1 cut(s) 451
TfiI GAWTC 3 cut(s) 92, 287, 297
TscAI CASTG 2 cut(s) 551, 637
TseFI GTSAC 1 cut(s) 628
Tsp45I GTSAC 1 cut(s) 628
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 564
TspRI CASTG 2 cut(s) 551, 637
Van91I CCANNNNNTGG 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 531
XapI RAATTY 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.