Rh1CG299000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016924
Physical Location & Seq
Reverse (-)
57371272 .. 57372489
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG299000.1

Sequence Viewer

Length: 594 bp
ATGGAGTCTCACAACCCTCATTTTGAAGCTCCTGTACAAGACTCTGGTTTTGCATTTGAACAAGACCAAGAAGAAGACGCACTTTCTCTTTGTGATCTCCCACTCCATGAACACAGCGAAGAAGAAAGCCCGGCCTCAGTTTCCGAGCCGGAAGACTTCTTCGAATTCGCTGTCGACCCTGTCTATGGCTACTACCCAATGGACATAGTCTTCTGCGGAAAATCCATCCCTTGCTCGAAGCCAATGAACAAACAATTTGGCTCCAGATCTGAGTCCTTCAAACTAGGACATTGTCCCAGTTCTCAATCTCACGTGATTCAACAACAGAGGAGCCTGAAATCGAAGTCTAGCAACTCAGATAAGCACTTGATAGGGCTGGTGAAGTACCATCAGCAGGAGATGGACCTAAACGAGATAAGAAAGCGACAAGGCAGGCGAGCTCCGGTGGCAATGTTTCCTGTGAACGGCGGGGAGAAACCGGAAGTGAAGAACGAAGGGAAAGGGCACTCGGGTGTGATGAGACCGTTGAGGTGTCGGTCACACTTACTCAGCGCGCTGGCTAAGGCGGCTCTAGGTTGCATACCTCATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.02

Weight (kDa)

6.11

Isoelectric Point (pI)

64.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016924)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g20010
malus_domestica MD01G1111500.v1.1 MD07G1177700.v1.1
prunus_persica Prupe.2G217100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0363961
rosa_laevigata RLG00000027532
rosa_multiflora Rmu_ssc0000167.1_g000035
rosa_roxburghii Rroxscaffold_4G00292800
rosa_rugosa Rorug01G0311700
rosa_samantha Rh1AG319500 Rh1BG282600 Rh1CG299000 Rh1DG314000
rosa_wichuraiana Rw1G028320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 174
AccII CGCG 1 cut(s) 554
AciI CCGC 3 cut(s) 216, 468, 566
AcsI RAATTY 1 cut(s) 164
AcvI CACGTG 1 cut(s) 313
AfaI GTAC 2 cut(s) 36, 386
AfiI CCNNNNNNNGG 3 cut(s) 185, 394, 464
AgsI TTSAA 4 cut(s) 26, 59, 280, 320
AleI CACNNNNGTG 1 cut(s) 510
AluBI AGCT 2 cut(s) 29, 440
AluI AGCT 2 cut(s) 29, 440
Alw21I GWGCWC 1 cut(s) 442
Alw26I GTCTC 2 cut(s) 12, 514
Ama87I CYCGRG 1 cut(s) 508
AoxI GGCC 1 cut(s) 132
ApoI RAATTY 1 cut(s) 164
ArsI GACNNNNNNTTYG 4 cut(s) 32, 64, 156, 188
AspLEI GCGC 2 cut(s) 554, 556
AspS9I GGNCC 1 cut(s) 403
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 391
AsuII TTCGAA 1 cut(s) 162
AvaI CYCGRG 1 cut(s) 508
AvaII GGWCC 1 cut(s) 403
BaeGI GKGCMC 1 cut(s) 507
BanII GRGCYC 1 cut(s) 442
BarI GAAGNNNNNNTAC 2 cut(s) 18, 50
BbrPI CACGTG 1 cut(s) 313
BbsI GAAGAC 3 cut(s) 81, 159, 202
Bbv12I GWGCWC 1 cut(s) 442
BccI CCATC 3 cut(s) 233, 394, 396
BceAI ACGGC 1 cut(s) 481
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 2 cut(s) 12, 514
BfaI CTAG 3 cut(s) 284, 348, 572
BglII AGATCT 1 cut(s) 266
BisI GCNGC 1 cut(s) 567
BlsI GCNGC 1 cut(s) 568
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 403
BmeT110I CYCGRG 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 403
BmiI GGNNCC 2 cut(s) 262, 332
BmrFI CCNGG 1 cut(s) 131
BmrI ACTGGG 1 cut(s) 291
BmuI ACTGGG 1 cut(s) 291
BpiI GAAGAC 3 cut(s) 81, 159, 202
BpmI CTGGAG 1 cut(s) 247
Bpu10I CCTNAGC 1 cut(s) 561
Bpu14I TTCGAA 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 131
BsaAI YACGTR 1 cut(s) 313
BsaI GGTCTC 1 cut(s) 514
BsaWI WCCGGW 2 cut(s) 442, 478
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 394, 464
Bse1I ACTGG 1 cut(s) 297
Bse3DI GCAATG 1 cut(s) 456
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 3 cut(s) 185, 394, 464
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 4 cut(s) 150, 261, 369, 562
BseNI ACTGG 1 cut(s) 297
BsePI GCGCGC 1 cut(s) 552
BseRI GAGGAG 1 cut(s) 343
BseSI GKGCMC 1 cut(s) 507
Bsh1236I CGCG 1 cut(s) 554
BshFI GGCC 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 442
BsiHKCI CYCGRG 1 cut(s) 508
BsiSI CCGG 4 cut(s) 131, 149, 443, 479
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 3 cut(s) 185, 394, 464
BsmAI GTCTC 2 cut(s) 12, 514
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 1 cut(s) 134
Bso31I GGTCTC 1 cut(s) 514
BsoBI CYCGRG 1 cut(s) 508
Bsp119I TTCGAA 1 cut(s) 162
Bsp1286I GDGCHC 2 cut(s) 442, 507
Bsp1407I TGTACA 1 cut(s) 34
Bsp143I GATC 2 cut(s) 94, 266
BspACI CCGC 3 cut(s) 216, 468, 566
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 4 cut(s) 149, 262, 368, 561
BspFNI CGCG 1 cut(s) 554
BspLI GGNNCC 2 cut(s) 262, 332
BspT104I TTCGAA 1 cut(s) 162
BspTNI GGTCTC 1 cut(s) 514
BsrDI GCAATG 1 cut(s) 456
BsrGI TGTACA 1 cut(s) 34
BsrI ACTGG 1 cut(s) 297
BssHII GCGCGC 1 cut(s) 552
BssMI GATC 2 cut(s) 94, 266
Bst4CI ACNGT 1 cut(s) 525
BstAUI TGTACA 1 cut(s) 34
BstBAI YACGTR 1 cut(s) 313
BstBI TTCGAA 1 cut(s) 162
BstC8I GCNNGC 4 cut(s) 434, 438, 554, 558
BstDEI CTNAG 5 cut(s) 136, 270, 355, 548, 561
BstF5I GGATG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 554
BstHHI GCGC 2 cut(s) 554, 556
BstKTI GATC 2 cut(s) 97, 269
BstMAI GTCTC 2 cut(s) 12, 514
BstMBI GATC 2 cut(s) 94, 266
BstMWI GCNNNNNNNGC 2 cut(s) 446, 566
BstSCI CCNGG 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 507
BstUI CGCG 1 cut(s) 554
BstV2I GAAGAC 3 cut(s) 81, 159, 202
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 1 cut(s) 225
Cac8I GCNNGC 4 cut(s) 434, 438, 554, 558
CfoI GCGC 2 cut(s) 554, 556
Cfr13I GGNCC 1 cut(s) 403
CseI GACGC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 35, 385
CviAII CATG 2 cut(s) 107, 587
CviQI GTAC 2 cut(s) 35, 385
DdeI CTNAG 5 cut(s) 136, 270, 355, 548, 561
DpnI GATC 2 cut(s) 96, 268
DpnII GATC 2 cut(s) 94, 266
Ecl136II GAGCTC 1 cut(s) 440
Eco24I GRGCYC 1 cut(s) 442
Eco31I GGTCTC 1 cut(s) 514
Eco47I GGWCC 1 cut(s) 403
Eco53kI GAGCTC 1 cut(s) 440
Eco72I CACGTG 1 cut(s) 313
Eco88I CYCGRG 1 cut(s) 508
EcoICRI GAGCTC 1 cut(s) 440
EcoRI GAATTC 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 442
FaeI CATG 2 cut(s) 110, 590
FaiI YATR 5 cut(s) 108, 186, 206, 581, 588
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FaqI GGGAC 1 cut(s) 279
FatI CATG 2 cut(s) 106, 586
FauI CCCGC 1 cut(s) 461
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 567
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 442
Fsp4HI GCNGC 1 cut(s) 567
FspBI CTAG 3 cut(s) 284, 348, 572
GlaI GCGC 2 cut(s) 553, 555
GluI GCNGC 1 cut(s) 567
GsuI CTGGAG 1 cut(s) 247
HaeIII GGCC 1 cut(s) 134
HapII CCGG 4 cut(s) 131, 149, 443, 479
HgaI GACGC 1 cut(s) 86
HhaI GCGC 2 cut(s) 554, 556
Hin1II CATG 2 cut(s) 110, 590
Hin6I GCGC 2 cut(s) 552, 554
HinP1I GCGC 2 cut(s) 552, 554
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 4 cut(s) 5, 41, 272, 316
HpaII CCGG 4 cut(s) 131, 149, 443, 479
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 2 cut(s) 175, 463
Hpy188I TCNGA 3 cut(s) 145, 271, 358
Hpy188III TCNNGA 1 cut(s) 264
Hpy8I GTNNAC 2 cut(s) 175, 463
HpyAV CCTTC 2 cut(s) 286, 488
HpyCH4III ACNGT 1 cut(s) 525
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 2 cut(s) 53, 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 446, 566
HpyF3I CTNAG 5 cut(s) 136, 270, 355, 548, 561
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 2 cut(s) 110, 590
HspAI GCGC 2 cut(s) 552, 554
Kzo9I GATC 2 cut(s) 94, 266
LmnI GCTCC 4 cut(s) 34, 266, 330, 445
MaeI CTAG 3 cut(s) 284, 348, 572
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 537
MalI GATC 2 cut(s) 96, 268
MboI GATC 2 cut(s) 94, 266
MboII GAAGA 8 cut(s) 83, 86, 131, 134, 151, 164, 202, 499
MflI RGATCY 1 cut(s) 266
MhlI GDGCHC 2 cut(s) 442, 507
MluCI AATT 2 cut(s) 164, 254
MlyI GAGTC 3 cut(s) 14, 35, 281
MnlI CCTC 5 cut(s) 27, 145, 321, 522, 594
MslI CAYNNNNRTG 1 cut(s) 510
MspI CCGG 4 cut(s) 131, 149, 443, 479
MspR9I CCNGG 1 cut(s) 131
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 2 cut(s) 446, 566
NciI CCSGG 1 cut(s) 131
NdeII GATC 2 cut(s) 94, 266
NlaIII CATG 2 cut(s) 110, 590
NlaIV GGNNCC 2 cut(s) 262, 332
NmuCI GTSAC 1 cut(s) 537
NspV TTCGAA 1 cut(s) 162
OliI CACNNNNGTG 1 cut(s) 510
PauI GCGCGC 1 cut(s) 552
PfeI GAWTC 1 cut(s) 316
PflFI GACNNNGTC 3 cut(s) 179, 206, 291
PkrI GCNGC 1 cut(s) 568
PleI GAGTC 3 cut(s) 13, 35, 280
PmaCI CACGTG 1 cut(s) 313
PmlI CACGTG 1 cut(s) 313
PpsI GAGTC 3 cut(s) 13, 35, 280
Ppu21I YACGTR 1 cut(s) 313
Psp124BI GAGCTC 1 cut(s) 442
PspCI CACGTG 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 262, 332
PspPI GGNCC 1 cut(s) 403
PsuI RGATCY 1 cut(s) 266
PsyI GACNNNGTC 3 cut(s) 179, 206, 291
PteI GCGCGC 1 cut(s) 552
RsaI GTAC 2 cut(s) 36, 386
RsaNI GTAC 2 cut(s) 35, 385
RseI CAYNNNNRTG 1 cut(s) 510
SacI GAGCTC 1 cut(s) 442
SalI GTCGAC 1 cut(s) 173
SatI GCNGC 1 cut(s) 567
Sau3AI GATC 2 cut(s) 94, 266
Sau96I GGNCC 1 cut(s) 403
SchI GAGTC 3 cut(s) 14, 35, 281
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 2 cut(s) 442, 507
SetI ASST 7 cut(s) 31, 315, 408, 442, 533, 577, 586
SfuI TTCGAA 1 cut(s) 162
SinI GGWCC 1 cut(s) 403
SmiMI CAYNNNNRTG 1 cut(s) 510
Sse9I AATT 2 cut(s) 164, 254
SsiI CCGC 3 cut(s) 216, 468, 566
SspMI CTAG 3 cut(s) 284, 348, 572
SstI GAGCTC 1 cut(s) 442
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 525
TaiI ACGT 1 cut(s) 315
TaqI TCGA 4 cut(s) 162, 174, 236, 341
TaqII GACCGA 1 cut(s) 525
TasI AATT 2 cut(s) 164, 254
TatI WGTACW 1 cut(s) 34
TauI GCSGC 1 cut(s) 569
TfiI GAWTC 1 cut(s) 316
TseFI GTSAC 1 cut(s) 537
Tsp45I GTSAC 1 cut(s) 537
TspDTI ATGAA 2 cut(s) 123, 260
Tth111I GACNNNGTC 3 cut(s) 179, 206, 291
VpaK11BI GGWCC 1 cut(s) 403
XapI RAATTY 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 3 cut(s) 284, 348, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.