Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009716

Physical Location & Seq

Genomic Coordinates Forward (+)

16386724 .. 16387786

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g20060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGTTGCCGGATTAGACTCCTACGTTGCCCTTGAAGAAAACCCAGATCAGCAATTACAGAACCAACAAGATGATGATCCATATGAAGCAGTGGAGACGCTCTCTCTTTGTGATCTTCCTACGCACGGTGACTCTGCTCATTGGGATGACTTCTCCAGAGAGTATCAGAGCTCTTCATTTGATCGAGATGAAGACAACTTCTTTGAGTTCTTCAGTGAAGAGTTCACGGCCTCAGCATACGCATCTGAGAATAAAGACGTAATCTTCTGTGGGAAGAAGCTCATTCCCTACGTCAAAGAAGCACCACATGTTCCAGAAGAGAAGAAAACGACCAAGAAAAATTCAGAAACGAGCAAGAAAAGTTCCACCAAGAAATGGCGATTGTTTCGATGGAGAAGGTTTAGGAGATCAAAACCCAAGGTTGGCGCTAAGCACTCGAAGCCCAGTGAAGTAAAAGATGGTAGAAGTAACACTAATTCATTTCCCACGTCAAAGAGCAGCTACAAAAGGTGTGATCCTTCACTATGGAAAGTGTCGGTTATGTCTAGCAGCCGATCAAAATCAAAGTGGCATTTGTTCATGTTCGGAATAACGAAGTTTCCTACAGAGATGGAGCTGAGGGACATCAAGAAGAGGCAAAGCAGGAGGTTTAGGGCTAAATGTGAAGCAAGTAATGAAGTAATGGGAAGGGGAAATAAGGAAATTAGCAGTAATAATAGTAGTAGTACTAGTAACAATCGAGCCAAGGGATTGTGGGGTTTGTTGAGAGTTCTCGGGTGTAGCAGTAGTAGTAAGCATCGAAACAGCGTTGCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

273

Amino Acids

31.26

Weight (kDa)

9.48

Isoelectric Point (pI)

61.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009716)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20060 FvH4_7g20070
prunus_persica	Prupe.2G217400_v2.0.a1
pyrus_communis	pycom07g17190
rosa_chinensis	RchiOBHm_Chr1g0364021
rosa_laevigata	RLG00000027525 RLG00000027526
rosa_multiflora	Rmu_sc0009677.1_g000006 Rmu_sc0009677.1_g000007
rosa_roxburghii	Rroxscaffold_4G00292730 Rroxscaffold_4G00292740
rosa_rugosa	Rorug01G0312100 Rorug01G0312200
rosa_samantha	Rh1AG320100 Rh1AG320200 Rh1BG283000 Rh1BG283200 Rh1CG299700 Rh1CG299800 Rh1DG314600 Rh1DG315000
rosa_wichuraiana	Rw1G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	375
AclWI	GGATC	2 cut(s)	71, 509
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	196
AfaI	GTAC	1 cut(s)	727
AfiI	CCNNNNNNNGG	3 cut(s)	125, 375, 422
AflIII	ACRYGT	1 cut(s)	307
AgsI	TTSAA	1 cut(s)	35
AhlI	ACTAGT	1 cut(s)	728
AjiI	CACGTC	1 cut(s)	489
AluBI	AGCT	4 cut(s)	171, 280, 501, 616
AluI	AGCT	4 cut(s)	171, 280, 501, 616
Alw21I	GWGCWC	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	2 cut(s)	71, 509
Ama87I	CYCGRG	1 cut(s)	773
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	2 cut(s)	498, 549
ApoI	RAATTY	1 cut(s)	340
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AspLEI	GCGC	1 cut(s)	428
AsuHPI	GGTGA	1 cut(s)	140
AvaI	CYCGRG	1 cut(s)	773
BanII	GRGCYC	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	173
BbvCI	CCTCAGC	2 cut(s)	232, 617
BbvI	GCAGC	2 cut(s)	510, 561
BccI	CCATC	3 cut(s)	384, 452, 604
BceAI	ACGGC	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	89
BcuI	ACTAGT	1 cut(s)	728
BfaI	CTAG	2 cut(s)	546, 729
BfmI	CTRYAG	1 cut(s)	603
BfoI	RGCGCY	1 cut(s)	429
BisI	GCNGC	2 cut(s)	499, 550
BlpI	GCTNAGC	1 cut(s)	429
BlsI	GCNGC	2 cut(s)	500, 551
BmcAI	AGTACT	1 cut(s)	727
BmeT110I	CYCGRG	1 cut(s)	773
BmgBI	CACGTC	1 cut(s)	489
BmrI	ACTGGG	1 cut(s)	438
BmsI	GCATC	2 cut(s)	251, 805
BmuI	ACTGGG	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	198
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
BpmI	CTGGAG	1 cut(s)	139
Bpu10I	CCTNAGC	2 cut(s)	232, 617
Bpu1102I	GCTNAGC	1 cut(s)	429
BsaBI	GATNNNNATC	2 cut(s)	75, 559
BsaJI	CCNNGG	2 cut(s)	417, 744
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 375, 422
Bse1I	ACTGG	1 cut(s)	444
Bse8I	GATNNNNATC	2 cut(s)	75, 559
BseDI	CCNNGG	2 cut(s)	417, 744
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	2 cut(s)	75, 559
BseLI	CCNNNNNNNGG	3 cut(s)	125, 375, 422
BseMII	CTCAG	3 cut(s)	237, 246, 608
BseNI	ACTGG	1 cut(s)	444
BseXI	GCAGC	2 cut(s)	510, 561
BshFI	GGCC	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	173
BsiHKCI	CYCGRG	1 cut(s)	773
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	635
BslI	CCNNNNNNNGG	3 cut(s)	125, 375, 422
BsmAI	GTCTC	1 cut(s)	89
BsmBI	CGTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	635
BsnI	GGCC	1 cut(s)	230
BsoBI	CYCGRG	1 cut(s)	773
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	7 cut(s)	46, 76, 112, 181, 407, 514, 554
Bsp1720I	GCTNAGC	1 cut(s)	429
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	3 cut(s)	238, 245, 609
BspPI	GGATC	2 cut(s)	71, 509
BspQI	GCTCTTC	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	444
BssECI	CCNNGG	2 cut(s)	417, 744
BssMI	GATC	7 cut(s)	46, 76, 112, 181, 407, 514, 554
BssT1I	CCWWGG	2 cut(s)	417, 744
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	4 cut(s)	178, 213, 312, 626
BstDEI	CTNAG	4 cut(s)	232, 246, 429, 617
BstF5I	GGATG	1 cut(s)	151
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	7 cut(s)	49, 79, 115, 184, 410, 517, 557
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	7 cut(s)	46, 76, 112, 181, 407, 514, 554
BstMWI	GCNNNNNNNGC	1 cut(s)	439
BstNSI	RCATGY	1 cut(s)	311
BstSFI	CTRYAG	1 cut(s)	603
BstV1I	GCAGC	2 cut(s)	510, 561
BstV2I	GAAGAC	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	230
BtrI	CACGTC	1 cut(s)	489
BtsCI	GGATG	1 cut(s)	151
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	3 cut(s)	96, 220, 451
CfoI	GCGC	1 cut(s)	428
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	726
CviAII	CATG	2 cut(s)	308, 580
CviJI	RGCY	9 cut(s)	171, 230, 280, 442, 501, 552, 616, 656, 743
CviKI_1	RGCY	9 cut(s)	171, 230, 280, 442, 501, 552, 616, 656, 743
CviQI	GTAC	1 cut(s)	726
DdeI	CTNAG	4 cut(s)	232, 246, 429, 617
DpnI	GATC	7 cut(s)	48, 78, 114, 183, 409, 516, 556
DpnII	GATC	7 cut(s)	46, 76, 112, 181, 407, 514, 554
Eam1104I	CTCTTC	4 cut(s)	178, 213, 312, 626
EarI	CTCTTC	4 cut(s)	178, 213, 312, 626
Ecl136II	GAGCTC	1 cut(s)	171
Eco130I	CCWWGG	2 cut(s)	417, 744
Eco24I	GRGCYC	1 cut(s)	173
Eco53kI	GAGCTC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	196
Eco88I	CYCGRG	1 cut(s)	773
EcoICRI	GAGCTC	1 cut(s)	171
EcoT14I	CCWWGG	2 cut(s)	417, 744
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	2 cut(s)	417, 744
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	2 cut(s)	311, 583
FaiI	YATR	7 cut(s)	82, 84, 238, 309, 526, 542, 581
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	2 cut(s)	307, 579
FauNDI	CATATG	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	499, 550
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	2 cut(s)	499, 550
FspBI	CTAG	2 cut(s)	546, 729
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	2 cut(s)	499, 550
GsuI	CTGGAG	1 cut(s)	139
HaeII	RGCGCY	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	2 cut(s)	311, 583
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HinfI	GANTC	2 cut(s)	17, 131
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	4 cut(s)	168, 247, 346, 587
Hpy188III	TCNNGA	4 cut(s)	156, 185, 314, 628
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	3 cut(s)	390, 528, 681
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	4 cut(s)	24, 258, 291, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	439
HpyF3I	CTNAG	4 cut(s)	232, 246, 429, 617
HpySE526I	ACGT	4 cut(s)	24, 258, 291, 488
Hsp92II	CATG	2 cut(s)	311, 583
HspAI	GCGC	1 cut(s)	426
Kzo9I	GATC	7 cut(s)	46, 76, 112, 181, 407, 514, 554
LguI	GCTCTTC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	613
LpnPI	CCDG	6 cut(s)	22, 57, 169, 327, 457, 628
Lsp1109I	GCAGC	2 cut(s)	510, 561
LweI	GCATC	2 cut(s)	251, 805
MaeI	CTAG	2 cut(s)	546, 729
MaeII	ACGT	4 cut(s)	24, 258, 291, 488
MaeIII	GTNAC	3 cut(s)	128, 467, 731
MalI	GATC	7 cut(s)	48, 78, 114, 183, 409, 516, 556
MboI	GATC	7 cut(s)	46, 76, 112, 181, 407, 514, 554
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	4 cut(s)	53, 340, 475, 702
MlyI	GAGTC	2 cut(s)	11, 125
MnlI	CCTC	4 cut(s)	241, 612, 627, 639
MslI	CAYNNNNRTG	1 cut(s)	144
MspI	CCGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	439
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	7 cut(s)	46, 76, 112, 181, 407, 514, 554
NlaIII	CATG	2 cut(s)	311, 583
NmuCI	GTSAC	1 cut(s)	128
NspI	RCATGY	1 cut(s)	311
PciI	ACATGT	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	178
PflMI	CCANNNNNTGG	1 cut(s)	375
PkrI	GCNGC	2 cut(s)	500, 551
PleI	GAGTC	2 cut(s)	11, 125
PpsI	GAGTC	2 cut(s)	11, 125
PscI	ACATGT	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	727
RsaNI	GTAC	1 cut(s)	726
RseI	CAYNNNNRTG	1 cut(s)	144
SacI	GAGCTC	1 cut(s)	173
SapI	GCTCTTC	1 cut(s)	178
SatI	GCNGC	2 cut(s)	499, 550
Sau3AI	GATC	7 cut(s)	46, 76, 112, 181, 407, 514, 554
ScaI	AGTACT	1 cut(s)	727
SchI	GAGTC	2 cut(s)	11, 125
SduI	GDGCHC	1 cut(s)	173
SfaNI	GCATC	2 cut(s)	251, 805
SfcI	CTRYAG	1 cut(s)	603
SmiMI	CAYNNNNRTG	1 cut(s)	144
SpeI	ACTAGT	1 cut(s)	728
Sse9I	AATT	4 cut(s)	53, 340, 475, 702
SspMI	CTAG	2 cut(s)	546, 729
SstI	GAGCTC	1 cut(s)	173
StyI	CCWWGG	2 cut(s)	417, 744
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	4 cut(s)	27, 261, 294, 491
TaqI	TCGA	5 cut(s)	184, 388, 437, 739, 799
TasI	AATT	4 cut(s)	53, 340, 475, 702
TatI	WGTACW	1 cut(s)	725
TscAI	CASTG	3 cut(s)	96, 220, 451
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	2 cut(s)	498, 549
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	6 cut(s)	99, 165, 204, 468, 568, 690
TspRI	CASTG	3 cut(s)	96, 220, 451
Van91I	CCANNNNNTGG	1 cut(s)	375
XapI	RAATTY	1 cut(s)	340
XceI	RCATGY	1 cut(s)	311
XspI	CTAG	2 cut(s)	546, 729
ZrmI	AGTACT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.