Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009716

Physical Location & Seq

Genomic Coordinates Forward (+)

24738297 .. 24739729

Gene Structure 1433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G217400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGTTGCCCAAGAAACCTACCAGAACCCAACTGTTCTTGAAGAAAAAACCGAGCAGTTTCAAGATCAAGATCCATATGAAGCAGAGGAAACACTCTCACTTTGTGATCTTCCCACACACAGTGACTCAGCTCATTGGGATGACTGCTCCAAGGAGTATCAGAGCTCATCCTTTGACAATGATGAAGACAACTTCTTTGAGTTTTTCAGCGAAGAGTTCACAGCCTCAACGTACCCATCATCGGGGAAGGACATCATCTTCTGTGGAAAACTCATCCCCTACAAGGAAGCACCAAAAAGCTTTGAAGCAGAGAAAACCCACCACCAGGACAAGGAAATTGGCAGCACAAAACGCATCAGAAAAGGATTTTTCAGGTCATGGAGGTCCTGCTCTTTCCACAAGACAAGCAAGTCCTCCAACTCCAAAATCTCAAAGCCTGCGCTGCAAGGCAAAGACCCTAGGAGCATGAATACCTGTTTGTCATTTCCCACATCGAAAAGTTACAGAAAGTGTGAGCTTTCTAAAGTGTCCATACTTTCAAGCACCCCATCGAAGTCAAAGTGGTATCTTTTTATGTTTGGCATGGCCAGGTTTCCAACGGAGATGGAGCTCAGGGACATTAGAACAAGGCAGAGCAGGAGGAGCCCATCAACCATGTTTAGGTCTTGTGATGAAGACAGTGATCAAATGGAGGGGCAGAAGGGTAATATGGGAAGGAAAAGTAGTAACAAGGCCAAGGGATTGTGGGGGCTGCTGAGAGCTGTGGGGTGTAGGATTAGCCAGCCAAACGCTGTCGTAAAGGCAGGCTTCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

31.0

Weight (kDa)

8.52

Isoelectric Point (pI)

56.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009716)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20060 FvH4_7g20070
prunus_persica	Prupe.2G217400_v2.0.a1
pyrus_communis	pycom07g17190
rosa_chinensis	RchiOBHm_Chr1g0364021
rosa_laevigata	RLG00000027525 RLG00000027526
rosa_multiflora	Rmu_sc0009677.1_g000006 Rmu_sc0009677.1_g000007
rosa_roxburghii	Rroxscaffold_4G00292730 Rroxscaffold_4G00292740
rosa_rugosa	Rorug01G0312100 Rorug01G0312200
rosa_samantha	Rh1AG320100 Rh1AG320200 Rh1BG283000 Rh1BG283200 Rh1CG299700 Rh1CG299800 Rh1DG314600 Rh1DG315000
rosa_wichuraiana	Rw1G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	409
AclWI	GGATC	1 cut(s)	65
AcoI	YGGCCR	1 cut(s)	585
AdeI	CACNNNGTG	2 cut(s)	104, 122
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	6 cut(s)	241, 242, 283, 325, 331, 660
AgsI	TTSAA	4 cut(s)	41, 62, 305, 540
AjnI	CCWGG	2 cut(s)	324, 587
AluBI	AGCT	6 cut(s)	131, 165, 300, 517, 610, 761
AluI	AGCT	6 cut(s)	131, 165, 300, 517, 610, 761
Alw21I	GWGCWC	2 cut(s)	167, 612
AlwI	GGATC	1 cut(s)	65
AoxI	GGCC	2 cut(s)	585, 732
ApeKI	GCWGC	3 cut(s)	342, 442, 751
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AspA2I	CCTAGG	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	442
AspS9I	GGNCC	1 cut(s)	384
AvaII	GGWCC	1 cut(s)	384
AvrII	CCTAGG	1 cut(s)	458
BalI	TGGCCA	1 cut(s)	587
BanII	GRGCYC	3 cut(s)	167, 612, 647
BbsI	GAAGAC	2 cut(s)	192, 681
Bbv12I	GWGCWC	2 cut(s)	167, 612
BbvI	GCAGC	3 cut(s)	354, 429, 738
BccI	CCATC	4 cut(s)	244, 556, 598, 655
BciT130I	CCWGG	2 cut(s)	326, 589
BclI	TGATCA	1 cut(s)	682
BfaI	CTAG	1 cut(s)	459
BisI	GCNGC	3 cut(s)	343, 443, 752
BlnI	CCTAGG	1 cut(s)	458
BlsI	GCNGC	3 cut(s)	344, 444, 753
Bme1390I	CCNGG	2 cut(s)	326, 589
Bme18I	GGWCC	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	644
BmrFI	CCNGG	2 cut(s)	326, 589
BmsI	GCATC	1 cut(s)	363
BpiI	GAAGAC	2 cut(s)	192, 681
Bpu10I	CCTNAGC	1 cut(s)	611
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	150, 458, 735
Bsc4I	CCNNNNNNNGG	6 cut(s)	241, 242, 283, 325, 331, 660
Bse8I	GATNNNNATC	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	326, 589
BseDI	CCNNGG	3 cut(s)	150, 458, 735
BseGI	GGATG	3 cut(s)	145, 167, 273
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	6 cut(s)	241, 242, 283, 325, 331, 660
BseMII	CTCAG	3 cut(s)	141, 625, 746
BseRI	GAGGAG	1 cut(s)	655
BseXI	GCAGC	3 cut(s)	354, 429, 738
BshFI	GGCC	2 cut(s)	587, 734
BsiHKAI	GWGCWC	2 cut(s)	167, 612
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	6 cut(s)	241, 242, 283, 325, 331, 660
BsmFI	GGGAC	1 cut(s)	629
BsnI	GGCC	2 cut(s)	587, 734
Bsp1286I	GDGCHC	3 cut(s)	167, 612, 647
Bsp143I	GATC	4 cut(s)	64, 70, 106, 682
BspANI	GGCC	2 cut(s)	587, 734
BspCNI	CTCAG	3 cut(s)	140, 624, 747
BspLI	GGNNCC	1 cut(s)	644
BspPI	GGATC	1 cut(s)	65
BssECI	CCNNGG	3 cut(s)	150, 458, 735
BssMI	GATC	4 cut(s)	64, 70, 106, 682
BssT1I	CCWWGG	3 cut(s)	150, 458, 735
Bst2UI	CCWGG	2 cut(s)	326, 589
Bst4CI	ACNGT	3 cut(s)	34, 122, 680
Bst6I	CTCTTC	1 cut(s)	207
BstC8I	GCNNGC	3 cut(s)	438, 782, 805
BstDEI	CTNAG	3 cut(s)	127, 611, 755
BstF5I	GGATG	3 cut(s)	145, 167, 273
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	4 cut(s)	67, 73, 109, 685
BstMBI	GATC	4 cut(s)	64, 70, 106, 682
BstMWI	GCNNNNNNNGC	3 cut(s)	351, 442, 642
BstNI	CCWGG	2 cut(s)	326, 589
BstSCI	CCNGG	2 cut(s)	324, 587
BstV1I	GCAGC	3 cut(s)	354, 429, 738
BstV2I	GAAGAC	2 cut(s)	192, 681
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	587, 734
BtsCI	GGATG	3 cut(s)	145, 167, 273
BtsIMutI	CAGTG	2 cut(s)	127, 685
Cac8I	GCNNGC	3 cut(s)	438, 782, 805
CfoI	GCGC	1 cut(s)	442
Cfr13I	GGNCC	1 cut(s)	384
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	4 cut(s)	378, 466, 583, 655
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	3 cut(s)	127, 611, 755
DpnI	GATC	4 cut(s)	66, 72, 108, 684
DpnII	GATC	4 cut(s)	64, 70, 106, 682
DraIII	CACNNNGTG	2 cut(s)	104, 122
DrdI	GACNNNNNNGTC	1 cut(s)	409
DseDI	GACNNNNNNGTC	1 cut(s)	409
EaeI	YGGCCR	1 cut(s)	585
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Ecl136II	GAGCTC	2 cut(s)	165, 610
Eco130I	CCWWGG	3 cut(s)	150, 458, 735
Eco24I	GRGCYC	3 cut(s)	167, 612, 647
Eco47I	GGWCC	1 cut(s)	384
Eco53kI	GAGCTC	2 cut(s)	165, 610
EcoICRI	GAGCTC	2 cut(s)	165, 610
EcoO109I	RGGNCCY	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	324, 587
EcoT14I	CCWWGG	3 cut(s)	150, 458, 735
EcoT38I	GRGCYC	3 cut(s)	167, 612, 647
ErhI	CCWWGG	3 cut(s)	150, 458, 735
FaeI	CATG	4 cut(s)	381, 469, 586, 658
FaiI	YATR	9 cut(s)	76, 78, 379, 467, 533, 575, 584, 656, 710
FalI	AAGNNNNNCTT	1 cut(s)	791
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	4 cut(s)	377, 465, 582, 654
FauNDI	CATATG	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	682
Fnu4HI	GCNGC	3 cut(s)	343, 443, 752
FokI	GGATG	3 cut(s)	152, 154, 260
FriOI	GRGCYC	3 cut(s)	167, 612, 647
Fsp4HI	GCNGC	3 cut(s)	343, 443, 752
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	1 cut(s)	441
GluI	GCNGC	3 cut(s)	343, 443, 752
HaeIII	GGCC	2 cut(s)	587, 734
HhaI	GCGC	1 cut(s)	442
Hin1II	CATG	4 cut(s)	381, 469, 586, 658
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HindIII	AAGCTT	1 cut(s)	298
HinfI	GANTC	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	2 cut(s)	162, 359
Hpy188III	TCNNGA	3 cut(s)	38, 62, 68
Hpy8I	GTNNAC	1 cut(s)	219
HpyAV	CCTTC	3 cut(s)	241, 694, 708
HpyCH4III	ACNGT	3 cut(s)	34, 122, 680
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	1 cut(s)	445
HpyF10VI	GCNNNNNNNGC	3 cut(s)	351, 442, 642
HpyF3I	CTNAG	3 cut(s)	127, 611, 755
HpySE526I	ACGT	1 cut(s)	230
Hsp92II	CATG	4 cut(s)	381, 469, 586, 658
HspAI	GCGC	1 cut(s)	440
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	4 cut(s)	64, 70, 106, 682
LmnI	GCTCC	4 cut(s)	152, 462, 607, 642
Lsp1109I	GCAGC	3 cut(s)	354, 429, 738
LweI	GCATC	1 cut(s)	363
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	3 cut(s)	122, 500, 725
MalI	GATC	4 cut(s)	66, 72, 108, 684
MboI	GATC	4 cut(s)	64, 70, 106, 682
MboII	GAAGA	6 cut(s)	53, 101, 197, 224, 250, 686
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	3 cut(s)	167, 612, 647
MlsI	TGGCCA	1 cut(s)	587
MluCI	AATT	1 cut(s)	336
MluNI	TGGCCA	1 cut(s)	587
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	2 cut(s)	441, 620
MnlI	CCTC	6 cut(s)	79, 235, 375, 424, 633, 685
Mox20I	TGGCCA	1 cut(s)	587
MscI	TGGCCA	1 cut(s)	587
MslI	CAYNNNNRTG	1 cut(s)	138
Msp20I	TGGCCA	1 cut(s)	587
MspR9I	CCNGG	2 cut(s)	326, 589
MvaI	CCWGG	2 cut(s)	326, 589
MwoI	GCNNNNNNNGC	3 cut(s)	351, 442, 642
NdeI	CATATG	1 cut(s)	76
NdeII	GATC	4 cut(s)	64, 70, 106, 682
NlaIII	CATG	4 cut(s)	381, 469, 586, 658
NlaIV	GGNNCC	1 cut(s)	644
NmuCI	GTSAC	1 cut(s)	122
PkrI	GCNGC	3 cut(s)	344, 444, 753
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PpuMI	RGGWCCY	1 cut(s)	384
Psp124BI	GAGCTC	2 cut(s)	167, 612
Psp5II	RGGWCCY	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	324, 587
PspGI	CCWGG	2 cut(s)	324, 587
PspN4I	GGNNCC	1 cut(s)	644
PspPI	GGNCC	1 cut(s)	384
PspPPI	RGGWCCY	1 cut(s)	384
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	138
SacI	GAGCTC	2 cut(s)	167, 612
SatI	GCNGC	3 cut(s)	343, 443, 752
Sau3AI	GATC	4 cut(s)	64, 70, 106, 682
Sau96I	GGNCC	1 cut(s)	384
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	326, 589
SduI	GDGCHC	3 cut(s)	167, 612, 647
SfaNI	GCATC	1 cut(s)	363
SinI	GGWCC	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	1 cut(s)	336
SspMI	CTAG	1 cut(s)	459
SstI	GAGCTC	2 cut(s)	167, 612
StyD4I	CCNGG	2 cut(s)	324, 587
StyI	CCWWGG	3 cut(s)	150, 458, 735
TaaI	ACNGT	3 cut(s)	34, 122, 680
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	2 cut(s)	494, 551
TasI	AATT	1 cut(s)	336
TscAI	CASTG	2 cut(s)	127, 685
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	3 cut(s)	342, 442, 751
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	4 cut(s)	93, 198, 482, 687
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	2 cut(s)	127, 685
VpaK11BI	GGWCC	1 cut(s)	384
XmaJI	CCTAGG	1 cut(s)	458
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.